{"id":"https://openalex.org/W2135411671","doi":"https://doi.org/10.1186/1471-2105-13-s11-s3","title":"BioNLP Shared Task - The Bacteria Track","display_name":"BioNLP Shared Task - The Bacteria Track","publication_year":2012,"publication_date":"2012-06-01","ids":{"openalex":"https://openalex.org/W2135411671","doi":"https://doi.org/10.1186/1471-2105-13-s11-s3","mag":"2135411671","pmid":"https://pubmed.ncbi.nlm.nih.gov/22759457"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-s11-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s11-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S11-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S11-S3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083008473","display_name":"Robert Bossy","orcid":"https://orcid.org/0000-0001-6652-9319"},"institutions":[{"id":"https://openalex.org/I1314251682","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/05y503v71","country_code":"MA","type":"facility","lineage":["https://openalex.org/I1314251682"]}],"countries":["MA"],"is_corresponding":true,"raw_author_name":"Robert Bossy","raw_affiliation_strings":["Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, INRA UR1077 - F78352 Jouy-en-Josas, France","Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, Jouy-en-Josas, France"],"affiliations":[{"raw_affiliation_string":"Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, INRA UR1077 - F78352 Jouy-en-Josas, France","institution_ids":[]},{"raw_affiliation_string":"Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, Jouy-en-Josas, France","institution_ids":["https://openalex.org/I1314251682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025365568","display_name":"Julien Jourde","orcid":null},"institutions":[{"id":"https://openalex.org/I1314251682","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/05y503v71","country_code":"MA","type":"facility","lineage":["https://openalex.org/I1314251682"]},{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]}],"countries":["FR","MA"],"is_corresponding":false,"raw_author_name":"Julien Jourde","raw_affiliation_strings":["Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, INRA UR1077 - F78352, Jouy-en-Josas, France","Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, Jouy-en-Josas, France"],"affiliations":[{"raw_affiliation_string":"Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, INRA UR1077 - F78352, Jouy-en-Josas, France","institution_ids":["https://openalex.org/I4210159481"]},{"raw_affiliation_string":"Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, Jouy-en-Josas, France","institution_ids":["https://openalex.org/I1314251682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110938616","display_name":"Alain-Pierre Manine","orcid":null},"institutions":[{"id":"https://openalex.org/I4210114331","display_name":"Predict (France)","ror":"https://ror.org/02h0hx086","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210114331"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alain-Pierre Manine","raw_affiliation_strings":["PredictiveDB - 16, rue Alexandre Parodi, F75010, Paris, France","PredictiveDB - 16, rue Alexandre Parodi, Paris, France"],"affiliations":[{"raw_affiliation_string":"PredictiveDB - 16, rue Alexandre Parodi, F75010, Paris, France","institution_ids":["https://openalex.org/I4210114331"]},{"raw_affiliation_string":"PredictiveDB - 16, rue Alexandre Parodi, Paris, France","institution_ids":["https://openalex.org/I4210114331"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112813196","display_name":"Philippe Veber","orcid":"https://orcid.org/0000-0003-0328-0143"},"institutions":[{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]},{"id":"https://openalex.org/I1314251682","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/05y503v71","country_code":"MA","type":"facility","lineage":["https://openalex.org/I1314251682"]}],"countries":["FR","MA"],"is_corresponding":false,"raw_author_name":"Philippe Veber","raw_affiliation_strings":["Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, INRA UR1077 - F78352, Jouy-en-Josas, France","Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, Jouy-en-Josas, France"],"affiliations":[{"raw_affiliation_string":"Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, INRA UR1077 - F78352, Jouy-en-Josas, France","institution_ids":["https://openalex.org/I4210159481"]},{"raw_affiliation_string":"Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, Jouy-en-Josas, France","institution_ids":["https://openalex.org/I1314251682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056249331","display_name":"\u00c9rick Alphonse","orcid":null},"institutions":[{"id":"https://openalex.org/I4210114331","display_name":"Predict (France)","ror":"https://ror.org/02h0hx086","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210114331"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Erick Alphonse","raw_affiliation_strings":["PredictiveDB - 16, rue Alexandre Parodi, F75010, Paris, France","PredictiveDB - 16, rue Alexandre Parodi, Paris, France"],"affiliations":[{"raw_affiliation_string":"PredictiveDB - 16, rue Alexandre Parodi, F75010, Paris, France","institution_ids":["https://openalex.org/I4210114331"]},{"raw_affiliation_string":"PredictiveDB - 16, rue Alexandre Parodi, Paris, France","institution_ids":["https://openalex.org/I4210114331"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102841266","display_name":"Maarten van de Guchte","orcid":null},"institutions":[{"id":"https://openalex.org/I3017594750","display_name":"Microbiologie de l\u2019alimentation au service de la sant\u00e9","ror":"https://ror.org/0471cyx86","country_code":"FR","type":"facility","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I3017594750","https://openalex.org/I4210088668","https://openalex.org/I4210099460"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Maarten van de Guchte","raw_affiliation_strings":["MICALIS, Institut National de la Recherche Agronomique, UMR1319 - F78352, Jouy-en-Josas, France","MICALIS, Institut National de la Recherche Agronomique, Jouy en Josas, France"],"affiliations":[{"raw_affiliation_string":"MICALIS, Institut National de la Recherche Agronomique, UMR1319 - F78352, Jouy-en-Josas, France","institution_ids":["https://openalex.org/I3017594750"]},{"raw_affiliation_string":"MICALIS, Institut National de la Recherche Agronomique, Jouy en Josas, France","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068002461","display_name":"Philippe Bessi\u00e8res","orcid":null},"institutions":[{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]},{"id":"https://openalex.org/I1314251682","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/05y503v71","country_code":"MA","type":"facility","lineage":["https://openalex.org/I1314251682"]}],"countries":["FR","MA"],"is_corresponding":false,"raw_author_name":"Philippe Bessi\u00e8res","raw_affiliation_strings":["Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, INRA UR1077 - F78352, Jouy-en-Josas, France","Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, Jouy-en-Josas, France"],"affiliations":[{"raw_affiliation_string":"Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, INRA UR1077 - F78352, Jouy-en-Josas, France","institution_ids":["https://openalex.org/I4210159481"]},{"raw_affiliation_string":"Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, Jouy-en-Josas, France","institution_ids":["https://openalex.org/I1314251682"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063577222","display_name":"Claire N\u00e9dellec","orcid":"https://orcid.org/0000-0002-0577-0595"},"institutions":[{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]},{"id":"https://openalex.org/I1314251682","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/05y503v71","country_code":"MA","type":"facility","lineage":["https://openalex.org/I1314251682"]}],"countries":["FR","MA"],"is_corresponding":false,"raw_author_name":"Claire N\u00e9dellec","raw_affiliation_strings":["Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, INRA UR1077 - F78352, Jouy-en-Josas, France","Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, Jouy-en-Josas, France"],"affiliations":[{"raw_affiliation_string":"Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, INRA UR1077 - F78352, Jouy-en-Josas, France","institution_ids":["https://openalex.org/I4210159481"]},{"raw_affiliation_string":"Math\u00e9matique Informatique et G\u00e9nome, Institut National de la Recherche Agronomique, Jouy-en-Josas, France","institution_ids":["https://openalex.org/I1314251682"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5083008473"],"corresponding_institution_ids":["https://openalex.org/I1314251682"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.3616,"has_fulltext":true,"cited_by_count":48,"citation_normalized_percentile":{"value":0.93184753,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"13","issue":"S11","first_page":"S3","last_page":"S3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9699000120162964,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7246825098991394},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.7032788395881653},{"id":"https://openalex.org/keywords/coreference","display_name":"Coreference","score":0.677020788192749},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4585106670856476},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.44369786977767944},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.43746837973594666},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38969600200653076},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3889242112636566},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.28135931491851807},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.11577221751213074}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7246825098991394},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.7032788395881653},{"id":"https://openalex.org/C28076734","wikidata":"https://www.wikidata.org/wiki/Q63087","display_name":"Coreference","level":3,"score":0.677020788192749},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4585106670856476},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.44369786977767944},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.43746837973594666},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38969600200653076},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3889242112636566},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.28135931491851807},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.11577221751213074},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-13-s11-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s11-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S11-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22759457","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22759457","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-01190775v1","is_oa":true,"landing_page_url":"https://hal.science/hal-01190775","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2012, 13, &#x27E8;10.1186/1471-2105-13-S11-S3&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:2388902","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3384254","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-s11-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s11-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S11-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5400000214576721,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G7758152977","display_name":null,"funder_award_id":"support","funder_id":"https://openalex.org/F4320322892","funder_display_name":"Centre National de la Recherche Scientifique"}],"funders":[{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"},{"id":"https://openalex.org/F4320323910","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/01x3gbx83"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2135411671.pdf","grobid_xml":"https://content.openalex.org/works/W2135411671.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W5557833","https://openalex.org/W1490137556","https://openalex.org/W1525521077","https://openalex.org/W1864960538","https://openalex.org/W1987902506","https://openalex.org/W2031647041","https://openalex.org/W2032566933","https://openalex.org/W2046620928","https://openalex.org/W2064030835","https://openalex.org/W2098562307","https://openalex.org/W2100276951","https://openalex.org/W2108791029","https://openalex.org/W2110946298","https://openalex.org/W2112388284","https://openalex.org/W2122496795","https://openalex.org/W2127304021","https://openalex.org/W2130956021","https://openalex.org/W2149803936","https://openalex.org/W2159657801","https://openalex.org/W2171567870","https://openalex.org/W2252226131","https://openalex.org/W2914431807"],"related_works":["https://openalex.org/W2139373276","https://openalex.org/W2227889443","https://openalex.org/W2152228269","https://openalex.org/W2916147465","https://openalex.org/W1757434866","https://openalex.org/W2016071726","https://openalex.org/W2339319059","https://openalex.org/W2803693270","https://openalex.org/W2098562307","https://openalex.org/W2251431888"],"abstract_inverted_index":{"The":[0],"three":[1],"tasks":[2],"of":[3,16,41,50,58],"the":[4,34,38,48,51,56,71],"Bacteria":[5,52],"Track":[6],"offer":[7],"participants":[8],"a":[9,13],"chance":[10],"to":[11],"address":[12],"wide":[14],"range":[15],"issues":[17],"in":[18,33],"Information":[19],"Extraction,":[20],"including":[21],"entity":[22],"recognition,":[23],"semantic":[24],"typing":[25],"and":[26,44,62],"coreference":[27],"resolution.":[28],"We":[29],"found":[30],"common":[31],"trends":[32],"most":[35],"efficient":[36],"systems:":[37],"systematic":[39],"use":[40,57],"syntactic":[42],"dependencies":[43],"machine":[45],"learning.":[46],"Nevertheless,":[47],"originality":[49],"Biotopes":[53],"task":[54],"encouraged":[55],"interesting":[59],"novel":[60],"methods":[61],"techniques,":[63],"such":[64],"as":[65],"term":[66],"compositionality,":[67],"scopes":[68],"wider":[69],"than":[70],"sentence.":[72]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
