{"id":"https://openalex.org/W2031776773","doi":"https://doi.org/10.1186/1471-2105-13-83","title":"Detecting long tandem duplications in genomic sequences","display_name":"Detecting long tandem duplications in genomic sequences","publication_year":2012,"publication_date":"2012-05-08","ids":{"openalex":"https://openalex.org/W2031776773","doi":"https://doi.org/10.1186/1471-2105-13-83","mag":"2031776773"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-83","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-83","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-83","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-83","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090546289","display_name":"\u00c9ric Audemard","orcid":"https://orcid.org/0000-0002-1661-896X"},"institutions":[{"id":"https://openalex.org/I4210114712","display_name":"Laboratoire de Chimie Agro-Industrielle","ror":"https://ror.org/035emn182","country_code":"FR","type":"facility","lineage":["https://openalex.org/I205747304","https://openalex.org/I205747304","https://openalex.org/I4210088668","https://openalex.org/I4210097961","https://openalex.org/I4210114712","https://openalex.org/I4412460029","https://openalex.org/I4412460029"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Eric Audemard","raw_affiliation_strings":["Unit de Biomtrie et Intelligence Artificielle, UR 875, INRA, Toulouse, France","Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR 875, INRA, Toulouse, France"],"affiliations":[{"raw_affiliation_string":"Unit de Biomtrie et Intelligence Artificielle, UR 875, INRA, Toulouse, France","institution_ids":["https://openalex.org/I4210114712"]},{"raw_affiliation_string":"Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR 875, INRA, Toulouse, France","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111972408","display_name":"Thomas Schiex","orcid":"https://orcid.org/0000-0001-6049-3415"},"institutions":[{"id":"https://openalex.org/I4210114712","display_name":"Laboratoire de Chimie Agro-Industrielle","ror":"https://ror.org/035emn182","country_code":"FR","type":"facility","lineage":["https://openalex.org/I205747304","https://openalex.org/I205747304","https://openalex.org/I4210088668","https://openalex.org/I4210097961","https://openalex.org/I4210114712","https://openalex.org/I4412460029","https://openalex.org/I4412460029"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Thomas Schiex","raw_affiliation_strings":["Unit de Biomtrie et Intelligence Artificielle, UR 875, INRA, Toulouse, France","Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR 875, INRA, Toulouse, France"],"affiliations":[{"raw_affiliation_string":"Unit de Biomtrie et Intelligence Artificielle, UR 875, INRA, Toulouse, France","institution_ids":["https://openalex.org/I4210114712"]},{"raw_affiliation_string":"Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR 875, INRA, Toulouse, France","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107344993","display_name":"Thomas Faraut","orcid":null},"institutions":[{"id":"https://openalex.org/I4210153075","display_name":"Laboratoire de G\u00e9n\u00e9tique Cellulaire","ror":"https://ror.org/05k317v03","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210153075"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Thomas Faraut","raw_affiliation_strings":["Laboratoire de Gntique Cellulaire, INRA, Toulouse, France","Laboratoire de G\u00e9n\u00e9tique Cellulaire, INRA, Toulouse, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire de Gntique Cellulaire, INRA, Toulouse, France","institution_ids":["https://openalex.org/I4210153075"]},{"raw_affiliation_string":"Laboratoire de G\u00e9n\u00e9tique Cellulaire, INRA, Toulouse, France","institution_ids":["https://openalex.org/I4210153075"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5090546289"],"corresponding_institution_ids":["https://openalex.org/I4210114712"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.2684,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.57624462,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"13","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-duplication","display_name":"Gene duplication","score":0.821643054485321},{"id":"https://openalex.org/keywords/tandem-exon-duplication","display_name":"Tandem exon duplication","score":0.8192336559295654},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6940941214561462},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.573702871799469},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5706461071968079},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5657479166984558},{"id":"https://openalex.org/keywords/tandem","display_name":"Tandem","score":0.5569223165512085},{"id":"https://openalex.org/keywords/tandem-repeat","display_name":"Tandem repeat","score":0.5462082028388977},{"id":"https://openalex.org/keywords/segmental-duplication","display_name":"Segmental duplication","score":0.4945208728313446},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4837455749511719},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.449947714805603},{"id":"https://openalex.org/keywords/gene-family","display_name":"Gene family","score":0.17787030339241028}],"concepts":[{"id":"https://openalex.org/C7602840","wikidata":"https://www.wikidata.org/wiki/Q746284","display_name":"Gene duplication","level":3,"score":0.821643054485321},{"id":"https://openalex.org/C156446351","wikidata":"https://www.wikidata.org/wiki/Q7682435","display_name":"Tandem exon duplication","level":4,"score":0.8192336559295654},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6940941214561462},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.573702871799469},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5706461071968079},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5657479166984558},{"id":"https://openalex.org/C2777814067","wikidata":"https://www.wikidata.org/wiki/Q1752317","display_name":"Tandem","level":2,"score":0.5569223165512085},{"id":"https://openalex.org/C27149982","wikidata":"https://www.wikidata.org/wiki/Q3456514","display_name":"Tandem repeat","level":4,"score":0.5462082028388977},{"id":"https://openalex.org/C57808653","wikidata":"https://www.wikidata.org/wiki/Q7446270","display_name":"Segmental duplication","level":5,"score":0.4945208728313446},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4837455749511719},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.449947714805603},{"id":"https://openalex.org/C5911399","wikidata":"https://www.wikidata.org/wiki/Q2278983","display_name":"Gene family","level":4,"score":0.17787030339241028},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-13-83","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-83","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-83","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:HAL:hal-02650334v1","is_oa":false,"landing_page_url":"https://hal.inrae.fr/hal-02650334","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.biomedcentral.com/bmcbioinformatics/","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:21c39ab7e303464abb9f51bdc76b4664","is_oa":true,"landing_page_url":"https://doaj.org/article/21c39ab7e303464abb9f51bdc76b4664","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss 1, p 83 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2463380","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3464658","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-83","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-83","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-83","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323910","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/01x3gbx83"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2031776773.pdf","grobid_xml":"https://content.openalex.org/works/W2031776773.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1511771787","https://openalex.org/W1914610732","https://openalex.org/W1973862547","https://openalex.org/W1977545325","https://openalex.org/W1980868661","https://openalex.org/W1984212742","https://openalex.org/W2013976859","https://openalex.org/W2019591778","https://openalex.org/W2038464976","https://openalex.org/W2039752257","https://openalex.org/W2041624900","https://openalex.org/W2055043387","https://openalex.org/W2093466316","https://openalex.org/W2095829109","https://openalex.org/W2095840724","https://openalex.org/W2098704509","https://openalex.org/W2103111028","https://openalex.org/W2107248520","https://openalex.org/W2112814753","https://openalex.org/W2115011276","https://openalex.org/W2115467411","https://openalex.org/W2118630694","https://openalex.org/W2119632499","https://openalex.org/W2124166542","https://openalex.org/W2124397449","https://openalex.org/W2124560890","https://openalex.org/W2127791238","https://openalex.org/W2129497695","https://openalex.org/W2132340288","https://openalex.org/W2133514124","https://openalex.org/W2136439471","https://openalex.org/W2144274181","https://openalex.org/W2146050643","https://openalex.org/W2149517531","https://openalex.org/W2151318268","https://openalex.org/W2153444093","https://openalex.org/W2154759645","https://openalex.org/W2157394198","https://openalex.org/W2164417370","https://openalex.org/W2171905164","https://openalex.org/W2465323533","https://openalex.org/W2904955605","https://openalex.org/W2915880292","https://openalex.org/W4238737563"],"related_works":["https://openalex.org/W2082764409","https://openalex.org/W1914610732","https://openalex.org/W1617423665","https://openalex.org/W2414722825","https://openalex.org/W2131817730","https://openalex.org/W1970221653","https://openalex.org/W3105069054","https://openalex.org/W2106870860","https://openalex.org/W1977690075","https://openalex.org/W2107564137"],"abstract_inverted_index":{"Background:":[0],"Detecting":[1],"duplication":[2,32],"segments":[3],"within":[4],"completely":[5],"sequenced":[6],"genomes":[7],"provides":[8,40],"valuable":[9],"information":[10],"to":[11,30],"address":[12],"genome":[13],"evolution":[14],"and":[15],"in":[16],"particular":[17],"the":[18,22],"important":[19],"question":[20],"of":[21,24,45],"emergence":[23],"novel":[25],"functions.":[26],"The":[27],"usual":[28],"approach":[29],"gene":[31,38],"detection,":[33],"based":[34],"on":[35],"all-pairs":[36],"protein":[37],"comparisons,":[39],"only":[41],"a":[42],"restricted":[43],"view":[44],"duplication.":[46]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2014,"cited_by_count":2}],"updated_date":"2026-03-21T08:13:44.787528","created_date":"2016-06-24T00:00:00"}
