{"id":"https://openalex.org/W2125596158","doi":"https://doi.org/10.1186/1471-2105-13-67","title":"Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum","display_name":"Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum","publication_year":2012,"publication_date":"2012-05-01","ids":{"openalex":"https://openalex.org/W2125596158","doi":"https://doi.org/10.1186/1471-2105-13-67","mag":"2125596158","pmid":"https://pubmed.ncbi.nlm.nih.gov/22548871"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-67","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-67","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-67","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-67","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043169384","display_name":"Nicolas Terrapon","orcid":"https://orcid.org/0000-0002-3693-6017"},"institutions":[{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]},{"id":"https://openalex.org/I4210096541","display_name":"Institute for Biodiversity","ror":"https://ror.org/01n8ggb71","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I4210096541"]}],"countries":["DE","FR"],"is_corresponding":true,"raw_author_name":"Nicolas Terrapon","raw_affiliation_strings":["M\u00e9thodes et Algorithmes pour la Bioinformatique, LIRMM, Universit\u00e9 Montpellier 2, France","Laboratoire d'Informatique de Robotique et de Micro\u00e9lectronique de Montpellier","Institute f\u00fcr Evolution and Biodiverst\u00e4t"],"affiliations":[{"raw_affiliation_string":"M\u00e9thodes et Algorithmes pour la Bioinformatique, LIRMM, Universit\u00e9 Montpellier 2, France","institution_ids":[]},{"raw_affiliation_string":"Laboratoire d'Informatique de Robotique et de Micro\u00e9lectronique de Montpellier","institution_ids":["https://openalex.org/I4210101743"]},{"raw_affiliation_string":"Institute f\u00fcr Evolution and Biodiverst\u00e4t","institution_ids":["https://openalex.org/I4210096541"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078068308","display_name":"Olivier Gascuel","orcid":"https://orcid.org/0000-0002-9412-9723"},"institutions":[{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]},{"id":"https://openalex.org/I4210113863","display_name":"G\u00e9nomique Bioinformatique et Applications","ror":"https://ror.org/0264vhs54","country_code":"FR","type":"facility","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210113863","https://openalex.org/I4210134562"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Gascuel","raw_affiliation_strings":["M\u00e9thodes et Algorithmes pour la Bioinformatique, LIRMM, Univ., Montpellier, 2, France","M\u00e9thodes et Algorithmes pour la Bioinformatique"],"affiliations":[{"raw_affiliation_string":"M\u00e9thodes et Algorithmes pour la Bioinformatique, LIRMM, Univ., Montpellier, 2, France","institution_ids":["https://openalex.org/I4210101743"]},{"raw_affiliation_string":"M\u00e9thodes et Algorithmes pour la Bioinformatique","institution_ids":["https://openalex.org/I4210113863"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053335358","display_name":"\u00c9ric Mar\u00e9chal","orcid":"https://orcid.org/0000-0002-0060-1696"},"institutions":[{"id":"https://openalex.org/I3020098449","display_name":"CEA Grenoble","ror":"https://ror.org/02mg6n827","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I3020098449"]},{"id":"https://openalex.org/I4210099371","display_name":"Laboratoire Physiologie Cellulaire & V\u00e9g\u00e9tale","ror":"https://ror.org/00jxe7243","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I2738703131","https://openalex.org/I2738703131","https://openalex.org/I4210088668","https://openalex.org/I4210091409","https://openalex.org/I4210096427","https://openalex.org/I4210099371","https://openalex.org/I4210113668","https://openalex.org/I899635006"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"\u00c9ric Mar\u00e9chal","raw_affiliation_strings":["CEA Grenoble iRTSV/LPCV, 17 rue des Martyrs, France","Laboratoire de physiologie cellulaire v\u00e9g\u00e9tale"],"affiliations":[{"raw_affiliation_string":"CEA Grenoble iRTSV/LPCV, 17 rue des Martyrs, France","institution_ids":["https://openalex.org/I3020098449","https://openalex.org/I2738703131"]},{"raw_affiliation_string":"Laboratoire de physiologie cellulaire v\u00e9g\u00e9tale","institution_ids":["https://openalex.org/I4210099371"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049393621","display_name":"Laurent Br\u00e9h\u00e9lin","orcid":"https://orcid.org/0000-0002-2582-2831"},"institutions":[{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]},{"id":"https://openalex.org/I4210113863","display_name":"G\u00e9nomique Bioinformatique et Applications","ror":"https://ror.org/0264vhs54","country_code":"FR","type":"facility","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210113863","https://openalex.org/I4210134562"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laurent Br\u00e9h\u00e9lin","raw_affiliation_strings":["M\u00e9thodes et Algorithmes pour la Bioinformatique, LIRMM, Univ., Montpellier, 2, France","M\u00e9thodes et Algorithmes pour la Bioinformatique"],"affiliations":[{"raw_affiliation_string":"M\u00e9thodes et Algorithmes pour la Bioinformatique, LIRMM, Univ., Montpellier, 2, France","institution_ids":["https://openalex.org/I4210101743"]},{"raw_affiliation_string":"M\u00e9thodes et Algorithmes pour la Bioinformatique","institution_ids":["https://openalex.org/I4210113863"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5043169384"],"corresponding_institution_ids":["https://openalex.org/I4210096541","https://openalex.org/I4210101743"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.0736,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.76458912,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"13","issue":"1","first_page":"67","last_page":"67"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plasmodium-falciparum","display_name":"Plasmodium falciparum","score":0.8678648471832275},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6911611557006836},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.5816932320594788},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5758123397827148},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.5366231203079224},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5131602883338928},{"id":"https://openalex.org/keywords/plasmodium","display_name":"Plasmodium (life cycle)","score":0.45592784881591797},{"id":"https://openalex.org/keywords/markov-model","display_name":"Markov model","score":0.4441472887992859},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4313500225543976},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.388396680355072},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3483060598373413},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.34399569034576416},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.263677179813385},{"id":"https://openalex.org/keywords/malaria","display_name":"Malaria","score":0.2620484530925751},{"id":"https://openalex.org/keywords/parasite-hosting","display_name":"Parasite hosting","score":0.23559701442718506},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.21564611792564392},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.15110483765602112},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1292075216770172},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.10039523243904114},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.09761705994606018}],"concepts":[{"id":"https://openalex.org/C2778371730","wikidata":"https://www.wikidata.org/wiki/Q311383","display_name":"Plasmodium falciparum","level":3,"score":0.8678648471832275},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6911611557006836},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.5816932320594788},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5758123397827148},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.5366231203079224},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5131602883338928},{"id":"https://openalex.org/C2778675580","wikidata":"https://www.wikidata.org/wiki/Q614956","display_name":"Plasmodium (life cycle)","level":3,"score":0.45592784881591797},{"id":"https://openalex.org/C163836022","wikidata":"https://www.wikidata.org/wiki/Q6771326","display_name":"Markov model","level":3,"score":0.4441472887992859},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4313500225543976},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.388396680355072},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3483060598373413},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.34399569034576416},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.263677179813385},{"id":"https://openalex.org/C2778048844","wikidata":"https://www.wikidata.org/wiki/Q12156","display_name":"Malaria","level":2,"score":0.2620484530925751},{"id":"https://openalex.org/C71928629","wikidata":"https://www.wikidata.org/wiki/Q804206","display_name":"Parasite hosting","level":2,"score":0.23559701442718506},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.21564611792564392},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.15110483765602112},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1292075216770172},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.10039523243904114},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09761705994606018}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-13-67","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-67","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-67","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22548871","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22548871","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-00701611v1","is_oa":true,"landing_page_url":"https://hal.science/hal-00701611","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2012, 13 (1), pp.67. &#x27E8;10.1186/1471-2105-13-67&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:2e5ed8fe06914947bfd567ae5c792483","is_oa":true,"landing_page_url":"https://doaj.org/article/2e5ed8fe06914947bfd567ae5c792483","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss 1, p 67 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2440472","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3434054","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-67","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-67","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-67","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.7200000286102295}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2125596158.pdf","grobid_xml":"https://content.openalex.org/works/W2125596158.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1976927254","https://openalex.org/W1990203101","https://openalex.org/W1993885572","https://openalex.org/W2009570821","https://openalex.org/W2009850071","https://openalex.org/W2017519756","https://openalex.org/W2018607102","https://openalex.org/W2040184829","https://openalex.org/W2042783226","https://openalex.org/W2050828070","https://openalex.org/W2051916497","https://openalex.org/W2054554011","https://openalex.org/W2062018285","https://openalex.org/W2080694029","https://openalex.org/W2085277871","https://openalex.org/W2086173258","https://openalex.org/W2103017472","https://openalex.org/W2108929776","https://openalex.org/W2112380236","https://openalex.org/W2112792893","https://openalex.org/W2113403117","https://openalex.org/W2116423958","https://openalex.org/W2122576958","https://openalex.org/W2141885858","https://openalex.org/W2147614887","https://openalex.org/W2154071457","https://openalex.org/W2161062388","https://openalex.org/W2163627198","https://openalex.org/W2259225862","https://openalex.org/W2265587988","https://openalex.org/W2788073857","https://openalex.org/W4210623056","https://openalex.org/W4211000692","https://openalex.org/W4233815609","https://openalex.org/W4245668478","https://openalex.org/W4255096940","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2084516783","https://openalex.org/W1510894296","https://openalex.org/W2134386692","https://openalex.org/W2149347413","https://openalex.org/W2043005394","https://openalex.org/W2082284720","https://openalex.org/W2120900442","https://openalex.org/W2194396582","https://openalex.org/W2116722627","https://openalex.org/W2379938888"],"abstract_inverted_index":{"We":[0],"show":[1],"that":[2,27],"the":[3,15,20,37,43,47,99,106],"new":[4,40,44],"approaches":[5,45,102],"allow":[6],"identification":[7],"of":[8,36,39,88],"several":[9],"domain":[10],"families":[11],"previously":[12],"absent":[13],"in":[14],"P.":[16,74],"falciparum":[17,75],"proteome":[18],"and":[19,23,91],"Apicomplexa":[21],"phylum,":[22],"identify":[24,62],"many":[25],"domains":[26,67,90],"are":[28,54,59],"not":[29],"detected":[30],"by":[31],"previous":[32,48],"approaches.":[33],"In":[34],"terms":[35],"number":[38],"discovered":[41],"domains,":[42],"outperform":[46],"ones":[49],"when":[50,57],"no":[51],"close":[52],"species":[53],"available":[55,104],"or":[56],"they":[58],"used":[60],"to":[61],"likely":[63],"occurrences":[64],"among":[65],"potential":[66],"with":[68],"high":[69],"E-values.":[70],"All":[71],"predictions":[72],"on":[73],"have":[76],"been":[77],"integrated":[78],"into":[79],"a":[80],"dedicated":[81],"website":[82],"which":[83],"pools":[84],"all":[85],"known/new":[86],"annotations":[87],"protein":[89],"functions":[92],"for":[93],"this":[94],"organism.":[95],"A":[96],"software":[97],"implementing":[98],"two":[100],"proposed":[101],"is":[103],"at":[105],"same":[107],"address:":[108],"http://www.lirmm.fr/~terrapon/HMM\ufb01t/":[109]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
