{"id":"https://openalex.org/W2158028643","doi":"https://doi.org/10.1186/1471-2105-13-47","title":"Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II","display_name":"Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II","publication_year":2012,"publication_date":"2012-03-23","ids":{"openalex":"https://openalex.org/W2158028643","doi":"https://doi.org/10.1186/1471-2105-13-47","mag":"2158028643","pmid":"https://pubmed.ncbi.nlm.nih.gov/22443413"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-47","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-47","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-47","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-47","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071433093","display_name":"John Archer","orcid":"https://orcid.org/0000-0001-6212-0962"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"John Archer","raw_affiliation_strings":["Computational and Evolutionary Biology, Faculty of Life Sciences, University of Manchester, Manchester, UK. john.archer@manchester.ac.uk","Computational and Evolutionary Biology, Faculty of Life Sciences, University of Manchester, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"Computational and Evolutionary Biology, Faculty of Life Sciences, University of Manchester, Manchester, UK. john.archer@manchester.ac.uk","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Computational and Evolutionary Biology, Faculty of Life Sciences, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088791993","display_name":"Gregory J. Baillie","orcid":"https://orcid.org/0000-0002-6130-250X"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Greg Baillie","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Cambridge, UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102795593","display_name":"Simon J. Watson","orcid":"https://orcid.org/0000-0002-1741-5742"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Simon J Watson","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Cambridge, UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067304304","display_name":"Paul Kellam","orcid":"https://orcid.org/0000-0003-3166-4734"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]},{"id":"https://openalex.org/I4210093127","display_name":"MRC Laboratory for Molecular Cell Biology","ror":"https://ror.org/00fv61j67","country_code":"GB","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210087105","https://openalex.org/I4210093127","https://openalex.org/I45129253","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul Kellam","raw_affiliation_strings":["UCL/MRC Centre for Medical Molecular Virology, Division of Infection and Immunity, University College London, London, UK","Wellcome Trust Sanger Institute, Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"UCL/MRC Centre for Medical Molecular Virology, Division of Infection and Immunity, University College London, London, UK","institution_ids":["https://openalex.org/I4210093127","https://openalex.org/I45129253"]},{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Cambridge, UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083534383","display_name":"Andrew Rambaut","orcid":"https://orcid.org/0000-0003-4337-3707"},"institutions":[{"id":"https://openalex.org/I874236823","display_name":"Fogarty International Center","ror":"https://ror.org/02xey9a22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I874236823"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Andrew Rambaut","raw_affiliation_strings":["Fogarty International Center, National Institutes of Health, Bethesda, MD, USA","Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK"],"affiliations":[{"raw_affiliation_string":"Fogarty International Center, National Institutes of Health, Bethesda, MD, USA","institution_ids":["https://openalex.org/I874236823","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082064376","display_name":"David L. Robertson","orcid":"https://orcid.org/0000-0001-6338-0221"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David L Robertson","raw_affiliation_strings":["Computational and Evolutionary Biology, Faculty of Life Sciences, University of Manchester, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"Computational and Evolutionary Biology, Faculty of Life Sciences, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5071433093"],"corresponding_institution_ids":["https://openalex.org/I28407311"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":5.3781,"has_fulltext":true,"cited_by_count":67,"citation_normalized_percentile":{"value":0.96731695,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"13","issue":"1","first_page":"47","last_page":"47"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/indel","display_name":"Indel","score":0.7181828618049622},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5900949239730835},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5305091738700867},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5279780030250549},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5206650495529175},{"id":"https://openalex.org/keywords/deep-sequencing","display_name":"Deep sequencing","score":0.5059475302696228},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.481720507144928},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4482559859752655},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.44118672609329224},{"id":"https://openalex.org/keywords/word-error-rate","display_name":"Word error rate","score":0.4304963946342468},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4201413691043854},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3452785909175873},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26857465505599976},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.18003079295158386},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16865545511245728},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12369254231452942},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.11092939972877502}],"concepts":[{"id":"https://openalex.org/C119054055","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"Indel","level":5,"score":0.7181828618049622},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5900949239730835},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5305091738700867},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5279780030250549},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5206650495529175},{"id":"https://openalex.org/C132917006","wikidata":"https://www.wikidata.org/wiki/Q5250436","display_name":"Deep sequencing","level":4,"score":0.5059475302696228},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.481720507144928},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4482559859752655},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44118672609329224},{"id":"https://openalex.org/C40969351","wikidata":"https://www.wikidata.org/wiki/Q3516228","display_name":"Word error rate","level":2,"score":0.4304963946342468},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4201413691043854},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3452785909175873},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26857465505599976},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.18003079295158386},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16865545511245728},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12369254231452942},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.11092939972877502},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053118","descriptor_name":"Influenza A Virus, H1N1 Subtype","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D053118","descriptor_name":"Influenza A Virus, H1N1 Subtype","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D053118","descriptor_name":"Influenza A Virus, H1N1 Subtype","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D053118","descriptor_name":"Influenza A Virus, H1N1 Subtype","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D053118","descriptor_name":"Influenza A Virus, H1N1 Subtype","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053118","descriptor_name":"Influenza A Virus, H1N1 Subtype","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053118","descriptor_name":"Influenza A Virus, H1N1 Subtype","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053118","descriptor_name":"Influenza A Virus, H1N1 Subtype","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":10,"locations":[{"id":"doi:10.1186/1471-2105-13-47","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-47","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-47","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22443413","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22443413","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/7380613b-9d23-45cb-a65b-044099550345","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/7380613b-9d23-45cb-a65b-044099550345","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Archer, J, Baillie, G, Watson, S J, Kellam, P, Rambaut, A & Robertson, D L 2012, 'Analysis of high-depth sequence data for studying viral diversity: A comparison of next generation sequencing platforms using Segminator II', BMC Bioinformatics, vol. 13, no. 1, 47. https://doi.org/10.1186/1471-2105-13-47","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.ed.ac.uk:openaire/d7d81b68-496b-4495-b389-92a6b50157fe","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/d7d81b68-496b-4495-b389-92a6b50157fe","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Archer, J, Baillie, G, Watson, S J, Kellam, P, Rambaut, A & Robertson, D L 2012, 'Analysis of high-depth sequence data for studying viral diversity : a comparison of next generation sequencing platforms using Segminator II', BMC Bioinformatics, vol. 13, 47. https://doi.org/10.1186/1471-2105-13-47","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:eprints.gla.ac.uk:152132","is_oa":false,"landing_page_url":"http://eprints.gla.ac.uk/view/author/39082.html>","pdf_url":null,"source":{"id":"https://openalex.org/S4210235606","display_name":"ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam)","issn_l":"2622-8912","issn":["2622-8912","2622-8920"],"is_oa":false,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:doaj.org/article:246f61fdf1494f59911f69edb24420e8","is_oa":true,"landing_page_url":"https://doaj.org/article/246f61fdf1494f59911f69edb24420e8","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss 1, p 47 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2362718","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3359224","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/7380613b-9d23-45cb-a65b-044099550345","is_oa":true,"landing_page_url":"http://www.biomedcentral.com/1471-2105/13/47","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Archer, J, Baillie, G, Watson, S J, Kellam, P, Rambaut, A & Robertson, D L 2012, 'Analysis of high-depth sequence data for studying viral diversity: A comparison of next generation sequencing platforms using Segminator II', BMC Bioinformatics, vol. 13, no. 1, 47. https://doi.org/10.1186/1471-2105-13-47","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/62525","is_oa":true,"landing_page_url":"http://hdl.handle.net/10072/62525","pdf_url":null,"source":{"id":"https://openalex.org/S4306402548","display_name":"Griffith Research Online (Griffith University, Queensland, Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11701301","host_organization_name":"Griffith University","host_organization_lineage":["https://openalex.org/I11701301"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/61518","is_oa":true,"landing_page_url":"http://hdl.handle.net/10044/1/61518","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-47","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-47","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-47","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/12"}],"awards":[{"id":"https://openalex.org/G1329556879","display_name":null,"funder_award_id":"BB/H012419/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4906043000","display_name":"Understanding the evolution and diversity of viral pathogens using next generation sequencing technologies","funder_award_id":"BB/H012419/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5282413452","display_name":null,"funder_award_id":"BB/H011285/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2158028643.pdf","grobid_xml":"https://content.openalex.org/works/W2158028643.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1496518737","https://openalex.org/W1851713763","https://openalex.org/W1980355960","https://openalex.org/W1983531599","https://openalex.org/W1986473212","https://openalex.org/W2000894445","https://openalex.org/W2013258751","https://openalex.org/W2013815517","https://openalex.org/W2015125044","https://openalex.org/W2026549243","https://openalex.org/W2039197439","https://openalex.org/W2051453551","https://openalex.org/W2053485968","https://openalex.org/W2059670608","https://openalex.org/W2060582828","https://openalex.org/W2061537056","https://openalex.org/W2061680337","https://openalex.org/W2067391188","https://openalex.org/W2070479548","https://openalex.org/W2083925087","https://openalex.org/W2087464200","https://openalex.org/W2103903744","https://openalex.org/W2110397906","https://openalex.org/W2111283804","https://openalex.org/W2115171147","https://openalex.org/W2116614415","https://openalex.org/W2118870065","https://openalex.org/W2119951120","https://openalex.org/W2132926880","https://openalex.org/W2133233128","https://openalex.org/W2142403957","https://openalex.org/W2143173327","https://openalex.org/W2158073495","https://openalex.org/W2160665949","https://openalex.org/W2164631357","https://openalex.org/W2164762627","https://openalex.org/W2169367102","https://openalex.org/W4243977291"],"related_works":["https://openalex.org/W2952824393","https://openalex.org/W3132115146","https://openalex.org/W1969673184","https://openalex.org/W2947266077","https://openalex.org/W2619166255","https://openalex.org/W1539994441","https://openalex.org/W2472738690","https://openalex.org/W3011303654","https://openalex.org/W2359210733","https://openalex.org/W1970342753"],"abstract_inverted_index":{"We":[0,25],"have":[1,26],"demonstrated,":[2],"using":[3,18],"Segminator":[4],"II,":[5],"that":[6,56],"it":[7],"is":[8,60,91],"possible":[9],"to":[10,30,45,76],"distinguish":[11],"platform":[12],"specific":[13],"error":[14,35],"from":[15,21,96],"biological":[16],"variation":[17],"data":[19,59],"derived":[20],"two":[22],"different":[23],"platforms.":[24],"used":[27],"this":[28,71],"approach":[29],"quantify":[31],"the":[32,38,53,64,77,85],"amount":[33],"of":[34,66],"present":[36],"within":[37],"454":[39],"and":[40,68,88],"Illumina":[41],"platforms":[42],"in":[43,63],"relation":[44],"genomic":[46],"location":[47,51],"as":[48,50],"well":[49],"on":[52],"read.":[54],"Given":[55],"next":[57],"generation":[58],"increasingly":[61],"important":[62],"analysis":[65],"drug-resistance":[67],"vaccine":[69],"trials,":[70],"software":[72],"will":[73],"be":[74],"useful":[75],"pathogen":[78],"research":[79],"community.":[80],"A":[81],"zip":[82],"file":[83,90],"containing":[84],"source":[86],"code":[87],"jar":[89],"freely":[92],"available":[93],"for":[94],"download":[95],"http://www.bioinf.manchester.ac.uk/segminator/.":[97]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":16},{"year":2013,"cited_by_count":13},{"year":2012,"cited_by_count":6}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
