{"id":"https://openalex.org/W2097288488","doi":"https://doi.org/10.1186/1471-2105-13-42","title":"Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community","display_name":"Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community","publication_year":2012,"publication_date":"2012-03-19","ids":{"openalex":"https://openalex.org/W2097288488","doi":"https://doi.org/10.1186/1471-2105-13-42","mag":"2097288488","pmid":"https://pubmed.ncbi.nlm.nih.gov/22429538"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-42","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-42","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-42","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-42","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035580767","display_name":"Konstantinos Krampis","orcid":"https://orcid.org/0000-0002-9155-2390"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Konstantinos Krampis","raw_affiliation_strings":["J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA. agbiotec@gmail.com","J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA. agbiotec@gmail.com","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060841909","display_name":"Tim Booth","orcid":"https://orcid.org/0000-0003-2470-9519"},"institutions":[{"id":"https://openalex.org/I2802260906","display_name":"HR Wallingford","ror":"https://ror.org/00nxna028","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2802260906"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tim Booth","raw_affiliation_strings":["CEH Wallingford, Benson Lane, Wallingford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CEH Wallingford, Benson Lane, Wallingford, UK","institution_ids":["https://openalex.org/I2802260906"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043278195","display_name":"Brad Chapman","orcid":"https://orcid.org/0000-0002-3026-1856"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brad Chapman","raw_affiliation_strings":["Bioinformatics Core, Harvard School of Public Health, 655 Huntington Avenue, Boston, MA, 02115, USA","Bioinformatics Core, Harvard School of Public Health, Boston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Core, Harvard School of Public Health, 655 Huntington Avenue, Boston, MA, 02115, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Bioinformatics Core, Harvard School of Public Health, Boston, USA","institution_ids":["https://openalex.org/I111088046","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Bela Tiwari","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bela Tiwari","raw_affiliation_strings":["CLC Bio, Finlandsgade 10, 8200, \u00c5rhus N, Denmark","CLC Bio, \u00c5rhus N, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CLC Bio, Finlandsgade 10, 8200, \u00c5rhus N, Denmark","institution_ids":[]},{"raw_affiliation_string":"CLC Bio, \u00c5rhus N, Denmark","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084794615","display_name":"Mesude Bicak","orcid":"https://orcid.org/0000-0002-4546-9801"},"institutions":[{"id":"https://openalex.org/I2802260906","display_name":"HR Wallingford","ror":"https://ror.org/00nxna028","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2802260906"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mesude Bicak","raw_affiliation_strings":["CEH Wallingford, Benson Lane, Wallingford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CEH Wallingford, Benson Lane, Wallingford, UK","institution_ids":["https://openalex.org/I2802260906"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068248399","display_name":"Dawn Field","orcid":null},"institutions":[{"id":"https://openalex.org/I2802260906","display_name":"HR Wallingford","ror":"https://ror.org/00nxna028","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2802260906"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Dawn Field","raw_affiliation_strings":["CEH Wallingford, Benson Lane, Wallingford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CEH Wallingford, Benson Lane, Wallingford, UK","institution_ids":["https://openalex.org/I2802260906"]}]},{"author_position":"last","author":{"id":null,"display_name":"Karen E Nelson","orcid":null},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Karen E Nelson","raw_affiliation_strings":["J.Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD, 20850, USA","J. Craig Venter Institute,Rockville,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"J.Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD, 20850, USA","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"J. Craig Venter Institute,Rockville,USA","institution_ids":["https://openalex.org/I1301553790"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5035580767"],"corresponding_institution_ids":["https://openalex.org/I1301553790"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":10.5548,"has_fulltext":true,"cited_by_count":163,"citation_normalized_percentile":{"value":0.99036734,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"13","issue":"1","first_page":"42","last_page":"42"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.5554999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.5554999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.23180000483989716,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.11420000344514847,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.8389160633087158},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.7031965255737305},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7028360962867737},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.545637309551239},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.5411826968193054},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.49256449937820435},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.483578622341156},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.43985050916671753},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.43123680353164673},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.431182324886322},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3722970485687256},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.367722749710083},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3399660587310791},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.1180020272731781},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.11268314719200134}],"concepts":[{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.8389160633087158},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.7031965255737305},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7028360962867737},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.545637309551239},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.5411826968193054},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.49256449937820435},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.483578622341156},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.43985050916671753},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.43123680353164673},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.431182324886322},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3722970485687256},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.367722749710083},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3399660587310791},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.1180020272731781},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.11268314719200134},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-13-42","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-42","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-42","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22429538","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22429538","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:dash.harvard.edu:1/10489934","is_oa":true,"landing_page_url":"http://nrs.harvard.edu/urn-3:HUL.InstRepos:10489934","pdf_url":null,"source":{"id":"https://openalex.org/S4306401540","display_name":"Digital Access to Scholarship at Harvard (DASH) (Harvard University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I136199984","host_organization_name":"Harvard University","host_organization_lineage":["https://openalex.org/I136199984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:f653ef2ea3054f89805326605a950159","is_oa":true,"landing_page_url":"https://doaj.org/article/f653ef2ea3054f89805326605a950159","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss 1, p 42 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2378143","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3372431","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-42","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-42","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-42","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.6399999856948853}],"awards":[{"id":"https://openalex.org/G1634225273","display_name":null,"funder_award_id":"NBAF010005","funder_id":"https://openalex.org/F4320334631","funder_display_name":"Natural Environment Research Council"},{"id":"https://openalex.org/G5318939032","display_name":null,"funder_award_id":"NBAF010005","funder_id":"https://openalex.org/F4320320022","funder_display_name":"Sight Research UK"},{"id":"https://openalex.org/G7017700650","display_name":"NERC Biomolecular Analysis Facility - Wallingford","funder_award_id":"NBAF010005","funder_id":"https://openalex.org/F4320334631","funder_display_name":"Natural Environment Research Council"}],"funders":[{"id":"https://openalex.org/F4320310598","display_name":"Amazon Web Services","ror":"https://ror.org/04mv4n011"},{"id":"https://openalex.org/F4320320022","display_name":"Sight Research UK","ror":"https://ror.org/03z2py885"},{"id":"https://openalex.org/F4320334631","display_name":"Natural Environment Research Council","ror":"https://ror.org/02b5d8509"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2097288488.pdf","grobid_xml":"https://content.openalex.org/works/W2097288488.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1990073900","https://openalex.org/W1997512351","https://openalex.org/W2010191214","https://openalex.org/W2024872854","https://openalex.org/W2038777423","https://openalex.org/W2045474596","https://openalex.org/W2065783627","https://openalex.org/W2100618668","https://openalex.org/W2121762798","https://openalex.org/W2121792371","https://openalex.org/W2135277010","https://openalex.org/W2140919237"],"related_works":["https://openalex.org/W1657880117","https://openalex.org/W2595172197","https://openalex.org/W2127970246","https://openalex.org/W2084856301","https://openalex.org/W1001352512","https://openalex.org/W4382618745","https://openalex.org/W4244946961","https://openalex.org/W2915114672","https://openalex.org/W4221141299","https://openalex.org/W2073875337"],"abstract_inverted_index":{"BACKGROUND:":[0],"A":[1],"steep":[2],"drop":[3],"in":[4,89,160],"the":[5,15,19,53,67,161,166,170,173,191,200,263,274,295,299],"cost":[6],"of":[7,21,69,124,169,181,276],"next-generation":[8],"sequencing":[9,64],"during":[10,63],"recent":[11],"years":[12],"has":[13],"made":[14],"technology":[16],"affordable":[17],"to":[18,42,105,121,199,208,249,302],"majority":[20],"researchers,":[22],"but":[23],"downstream":[24],"bioinformatic":[25,201],"analysis":[26,292],"still":[27],"poses":[28],"a":[29,79,96,122,133,185,205,212,230,256,281],"resource":[30],"bottleneck":[31],"for":[32,60,110,143,217,241,258],"smaller":[33],"laboratories":[34],"and":[35,56,128,138,152,196,234,243,267,304],"institutes":[36],"that":[37,102],"do":[38],"not":[39],"have":[40,118,178],"access":[41,120,198,248],"substantial":[43],"computational":[44],"resources.":[45],"Sequencing":[46],"instruments":[47],"are":[48],"typically":[49],"bundled":[50],"with":[51,247],"only":[52],"minimal":[54],"processing":[55],"storage":[57],"capacity":[58],"required":[59,301],"data":[61],"capture":[62],"runs.":[65],"Given":[66],"scale":[68],"sequence":[70,146],"datasets,":[71],"scientific":[72],"value":[73],"cannot":[74],"be":[75],"obtained":[76],"from":[77,165,211,225,280],"acquiring":[78],"sequencer":[80],"unless":[81],"it":[82],"is":[83,95,157,223,237],"accompanied":[84],"by":[85,245,297],"an":[86],"equal":[87],"investment":[88],"informatics":[90],"infrastructure.":[91],"RESULTS:":[92],"Cloud":[93,182,219,253],"BioLinux":[94,183,220,254],"publicly":[97,239],"accessible":[98,164],"Virtual":[99,271],"Machine":[100],"(VM)":[101],"enables":[103,289],"scientists":[104],"quickly":[106],"provision":[107],"on-demand":[108],"infrastructures":[109,261],"high-performance":[111],"bioinformatics":[112,141,260],"computing":[113],"using":[114,218],"cloud":[115,188,232,296],"platforms.":[116],"Users":[117],"instant":[119],"range":[123],"pre-configured":[125],"command":[126],"line":[127],"graphical":[129,167],"software":[130],"applications,":[131],"including":[132,145],"full-featured":[134],"desktop":[135,214],"interface,":[136],"documentation":[137,162],"over":[139],"135":[140],"packages":[142],"applications":[144],"alignment,":[147],"clustering,":[148],"assembly,":[149],"display,":[150],"editing,":[151],"phylogeny.":[153],"Each":[154],"tool's":[155],"functionality":[156],"fully":[158],"described":[159],"directly":[163],"interface":[168,203],"VM.":[171],"Besides":[172],"Amazon":[174],"EC2":[175,209,222],"cloud,":[176],"we":[177],"started":[179],"instances":[180,210],"on":[184,221,262,294],"private":[186,250],"Eucalyptus":[187,231],"installed":[189],"at":[190],"J.":[192],"Craig":[193],"Venter":[194],"Institute,":[195],"demonstrated":[197],"tools":[202],"through":[204],"remote":[206],"connection":[207],"local":[213],"computer.":[215],"Documentation":[216],"available":[224,240],"our":[226],"project":[227],"website,":[228],"while":[229],"image":[233],"VirtualBox":[235],"Appliance":[236],"also":[238],"download":[242],"use":[244],"researchers":[246],"clouds.":[251],"CONCLUSIONS:":[252],"provides":[255],"platform":[257],"developing":[259],"cloud.":[264],"An":[265],"automated":[266],"configurable":[268],"process":[269],"builds":[270],"Machines,":[272],"allowing":[273],"development":[275],"highly":[277],"customized":[278],"versions":[279],"shared":[282,286],"code":[283],"base.":[284],"This":[285],"community":[287],"toolkit":[288],"application":[290],"specific":[291],"platforms":[293],"minimizing":[298],"effort":[300],"prepare":[303],"maintain":[305],"them.":[306]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":15},{"year":2016,"cited_by_count":17},{"year":2015,"cited_by_count":27},{"year":2014,"cited_by_count":29},{"year":2013,"cited_by_count":22},{"year":2012,"cited_by_count":8}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
