{"id":"https://openalex.org/W2081598613","doi":"https://doi.org/10.1186/1471-2105-13-334","title":"Protein interface classification by evolutionary analysis","display_name":"Protein interface classification by evolutionary analysis","publication_year":2012,"publication_date":"2012-12-01","ids":{"openalex":"https://openalex.org/W2081598613","doi":"https://doi.org/10.1186/1471-2105-13-334","mag":"2081598613","pmid":"https://pubmed.ncbi.nlm.nih.gov/23259833"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-334","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-334","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-334","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-334","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003460293","display_name":"Jos\u00e9 M. Duarte","orcid":"https://orcid.org/0000-0002-9544-5621"},"institutions":[{"id":"https://openalex.org/I2802229908","display_name":"Paul Scherrer Institute","ror":"https://ror.org/03eh3y714","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2799323385","https://openalex.org/I2802229908"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Jose M Duarte","raw_affiliation_strings":["Paul Scherrer Institut, Villigen, CH-5232, Switzerland","Paul Scherrer Institut Villigen Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Paul Scherrer Institut, Villigen, CH-5232, Switzerland","institution_ids":["https://openalex.org/I2802229908"]},{"raw_affiliation_string":"Paul Scherrer Institut Villigen Switzerland","institution_ids":["https://openalex.org/I2802229908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027597704","display_name":"Adam Srebniak","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Adam Srebniak","raw_affiliation_strings":["SyBIT, ETH Zurich, Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SyBIT, ETH Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071076703","display_name":"Martin A. Sch\u00e4rer","orcid":null},"institutions":[{"id":"https://openalex.org/I2802229908","display_name":"Paul Scherrer Institute","ror":"https://ror.org/03eh3y714","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2799323385","https://openalex.org/I2802229908"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Martin A Sch\u00e4rer","raw_affiliation_strings":["Paul Scherrer Institut, Villigen, CH-5232, Switzerland","Institute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland","Paul Scherrer Institut, Villigen, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Paul Scherrer Institut, Villigen, CH-5232, Switzerland","institution_ids":["https://openalex.org/I2802229908"]},{"raw_affiliation_string":"Institute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Paul Scherrer Institut, Villigen, Switzerland","institution_ids":["https://openalex.org/I2802229908"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068964904","display_name":"Guido Capitani","orcid":null},"institutions":[{"id":"https://openalex.org/I2802229908","display_name":"Paul Scherrer Institute","ror":"https://ror.org/03eh3y714","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2799323385","https://openalex.org/I2802229908"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Guido Capitani","raw_affiliation_strings":["Paul Scherrer Institut, Villigen, CH-5232, Switzerland","Paul Scherrer Institut Villigen Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Paul Scherrer Institut, Villigen, CH-5232, Switzerland","institution_ids":["https://openalex.org/I2802229908"]},{"raw_affiliation_string":"Paul Scherrer Institut Villigen Switzerland","institution_ids":["https://openalex.org/I2802229908"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5068964904"],"corresponding_institution_ids":["https://openalex.org/I2802229908"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":1356,"currency":"EUR","value_usd":1462},"fwci":4.5413,"has_fulltext":true,"cited_by_count":156,"citation_normalized_percentile":{"value":0.95854457,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"13","issue":"1","first_page":"334","last_page":"334"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.6269999742507935,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.6269999742507935,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.1046999990940094,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.055799998342990875,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5855099558830261},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5360318422317505},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.532646656036377},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5262987613677979},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38345867395401},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.36572232842445374},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.33704519271850586},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26081782579421997},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10084357857704163},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.06945091485977173}],"concepts":[{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5855099558830261},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5360318422317505},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.532646656036377},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5262987613677979},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38345867395401},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.36572232842445374},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.33704519271850586},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26081782579421997},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10084357857704163},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.06945091485977173},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017385","descriptor_name":"Sequence Homology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017385","descriptor_name":"Sequence Homology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017385","descriptor_name":"Sequence Homology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-13-334","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-334","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-334","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23259833","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23259833","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:6e576464bd634f3091bf94a9947375f5","is_oa":false,"landing_page_url":"https://doaj.org/article/6e576464bd634f3091bf94a9947375f5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss 1, p 334 (2012)","raw_type":"article"},{"id":"pmh:oai:dora:psi_12843","is_oa":false,"landing_page_url":"https://www.dora.lib4ri.ch/psi/islandora/object/psi%3A12843","pdf_url":null,"source":{"id":"https://openalex.org/S4306402574","display_name":"DORA PSI (Paul Scherrer Institute)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2802229908","host_organization_name":"Paul Scherrer Institute","host_organization_lineage":["https://openalex.org/I2802229908"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:europepmc.org:2555328","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3556496","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/63990","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/63990","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 13","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.3929/ethz-b-000063990","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000063990","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-334","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-334","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-334","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6899999976158142,"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10"}],"awards":[{"id":"https://openalex.org/G5734311171","display_name":null,"funder_award_id":"FK-05.08.1","funder_id":"https://openalex.org/F4320322463","funder_display_name":"Paul Scherrer Institut"},{"id":"https://openalex.org/G951345185","display_name":null,"funder_award_id":"FK-04.09.1","funder_id":"https://openalex.org/F4320322463","funder_display_name":"Paul Scherrer Institut"}],"funders":[{"id":"https://openalex.org/F4320322463","display_name":"Paul Scherrer Institut","ror":"https://ror.org/03eh3y714"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2081598613.pdf","grobid_xml":"https://content.openalex.org/works/W2081598613.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W88153857","https://openalex.org/W255996521","https://openalex.org/W1562938704","https://openalex.org/W1563420813","https://openalex.org/W1967408543","https://openalex.org/W1971248251","https://openalex.org/W1985153601","https://openalex.org/W1992806534","https://openalex.org/W1998093640","https://openalex.org/W1999982273","https://openalex.org/W2001900040","https://openalex.org/W2022356570","https://openalex.org/W2031772330","https://openalex.org/W2033443315","https://openalex.org/W2035503835","https://openalex.org/W2036282817","https://openalex.org/W2045197143","https://openalex.org/W2046407284","https://openalex.org/W2051710717","https://openalex.org/W2052637365","https://openalex.org/W2058017150","https://openalex.org/W2061681936","https://openalex.org/W2062594525","https://openalex.org/W2069511429","https://openalex.org/W2072582089","https://openalex.org/W2074719974","https://openalex.org/W2075770210","https://openalex.org/W2084843323","https://openalex.org/W2093689899","https://openalex.org/W2097892623","https://openalex.org/W2098416804","https://openalex.org/W2099254366","https://openalex.org/W2100794900","https://openalex.org/W2103210604","https://openalex.org/W2108862316","https://openalex.org/W2110094991","https://openalex.org/W2121984048","https://openalex.org/W2123583836","https://openalex.org/W2124036707","https://openalex.org/W2127322768","https://openalex.org/W2133051701","https://openalex.org/W2137991504","https://openalex.org/W2145878324","https://openalex.org/W2152299045","https://openalex.org/W2158100564","https://openalex.org/W2158714788","https://openalex.org/W2163176800","https://openalex.org/W2168364606","https://openalex.org/W2170471837","https://openalex.org/W2170872475","https://openalex.org/W2582743722","https://openalex.org/W4236268324","https://openalex.org/W4385126812"],"related_works":["https://openalex.org/W2378005410","https://openalex.org/W2048876619","https://openalex.org/W2415545834","https://openalex.org/W2069695727","https://openalex.org/W2170435352","https://openalex.org/W1802639773","https://openalex.org/W2118505788","https://openalex.org/W4254166511","https://openalex.org/W1570606890","https://openalex.org/W2123397376"],"abstract_inverted_index":{"BACKGROUND:":[0],"Distinguishing":[1],"biologically":[2],"relevant":[3],"interfaces":[4,267],"from":[5,135,154],"lattice":[6],"contacts":[7,134],"in":[8,15,112,265,283],"protein":[9,238],"crystals":[10],"is":[11,111,127,198,217],"a":[12,36,55,114,181,202,278],"fundamental":[13,104],"problem":[14],"structural":[16,164,284],"biology.":[17],"Despite":[18],"efforts":[19],"towards":[20],"the":[21,47,69,123,155,171,174,195,213,220,223,234,251,269,290,296],"computational":[22],"prediction":[23],"of":[24,50,60,72,89,106,117,143,163,173,185,222,237,254,263,268,280],"interface":[25,38,83,118,303],"character,":[26],"many":[27],"issues":[28],"are":[29],"still":[30],"unresolved.":[31],"RESULTS:":[32],"We":[33,138,288],"present":[34],"here":[35,216],"protein-protein":[37],"classifier":[39,53],"that":[40,140,180],"relies":[41],"on":[42,68],"evolutionary":[43,65,124,210,235],"data":[44,167],"to":[45,102,129,147,170,194,200,219,250,277,295],"detect":[46],"biological":[48,107,133],"character":[49,119,236],"interfaces.":[51,239],"The":[52,91,157],"uses":[54],"simple":[56],"geometric":[57],"measure,":[58],"number":[59,110],"core":[61,84,92,144],"residues,":[62,93],"and":[63,85,120,160,165,242,273,286],"two":[64],"indicators":[66],"based":[67],"sequence":[70,166,192,255],"entropy":[71],"homolog":[73,186],"sequences.":[74],"Both":[75],"aim":[76],"at":[77,304],"detecting":[78],"differential":[79],"selection":[80,159,184],"pressure":[81],"between":[82],"rim":[86],"or":[87],"rest":[88],"surface.":[90],"defined":[94],"as":[95,298],"fully":[96],"buried":[97],"residues":[98,145],"(>95%":[99],"burial),":[100],"appear":[101],"be":[103],"determinants":[105],"interfaces:":[108],"their":[109],"itself":[113,276],"powerful":[115],"discriminator":[116],"together":[121],"with":[122,189],"measures":[125],"it":[126,274],"able":[128,199],"clearly":[130],"distinguish":[131],"evolved":[132],"crystal":[136],"ones.":[137],"demonstrate":[139,179],"this":[141],"definition":[142],"leads":[146],"distinctively":[148],"better":[149],"results":[150],"than":[151,205],"earlier":[152],"definitions":[153],"literature.":[156],"stringent":[158],"quality":[161],"filtering":[162],"was":[168,228],"key":[169,218],"success":[172],"method.":[175],"Most":[176],"importantly":[177],"we":[178],"more":[182],"conservative":[183],"sequences":[187],"-":[188,197],"relatively":[190],"high":[191],"identities":[193],"query":[196],"produce":[201],"clearer":[203],"signal":[204],"previous":[206],"attempts.":[207],"CONCLUSIONS:":[208],"An":[209],"approach":[211],"like":[212],"one":[214],"presented":[215],"advancement":[221],"field,":[224],"which":[225],"so":[226],"far":[227],"missing":[229],"an":[230,261,299],"effective":[231],"method":[232,259],"exploiting":[233],"Its":[240],"coverage":[241],"performance":[243],"will":[244],"only":[245],"improve":[246],"over":[247],"time":[248],"thanks":[249],"incessant":[252],"growth":[253],"databases.":[256],"Currently":[257],"our":[258],"reaches":[260],"accuracy":[262],"89%":[264],"classifying":[266],"Ponstingl":[270],"2003":[271],"datasets":[272],"lends":[275],"variety":[279],"useful":[281],"applications":[282],"biology":[285],"bioinformatics.":[287],"made":[289],"corresponding":[291],"software":[292],"implementation":[293],"available":[294],"community":[297],"easy-to-use":[300],"graphical":[301],"web":[302],"http://www.eppic-web.org.":[305]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":17},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":15},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":8}],"updated_date":"2026-07-27T08:26:11.824852","created_date":"2025-10-10T00:00:00"}
