{"id":"https://openalex.org/W1975589113","doi":"https://doi.org/10.1186/1471-2105-13-33","title":"BLANNOTATOR: enhanced homology-based function prediction of bacterial proteins","display_name":"BLANNOTATOR: enhanced homology-based function prediction of bacterial proteins","publication_year":2012,"publication_date":"2012-02-15","ids":{"openalex":"https://openalex.org/W1975589113","doi":"https://doi.org/10.1186/1471-2105-13-33","mag":"1975589113","pmid":"https://pubmed.ncbi.nlm.nih.gov/22335941"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-33","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-33","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-33","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-33","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000875080","display_name":"Matti Kankainen","orcid":"https://orcid.org/0000-0002-4714-9481"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I2800229700","display_name":"Helsinki Institute of Physics","ror":"https://ror.org/01x2x1522","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I2800229700","https://openalex.org/I63548447","https://openalex.org/I94722563","https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Matti Kankainen","raw_affiliation_strings":["Institute of Biotechnology, University of Helsinki, Helsinki, Finland. matti.kankainen@helsinki.fi","Institute of Biotechnology, University of Helsinki, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology, University of Helsinki, Helsinki, Finland. matti.kankainen@helsinki.fi","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I2800229700"]},{"raw_affiliation_string":"Institute of Biotechnology, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086993374","display_name":"Teija Ojala","orcid":"https://orcid.org/0000-0001-8186-1707"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Teija Ojala","raw_affiliation_strings":["Institute of Biotechnology, University of Helsinki, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064498279","display_name":"Liisa Holm","orcid":"https://orcid.org/0000-0002-7807-2966"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Liisa Holm","raw_affiliation_strings":["Department of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland","Institute of Biotechnology, University of Helsinki, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"Institute of Biotechnology, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5000875080"],"corresponding_institution_ids":["https://openalex.org/I133731052","https://openalex.org/I2800229700"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.9818,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.72679888,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"13","issue":"1","first_page":"33","last_page":"33"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.8962000012397766,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.8962000012397766,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.026399999856948853,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.022199999541044235,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7893095016479492},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.7653535008430481},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6729375123977661},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.5994399785995483},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5312051177024841},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5230061411857605},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.49490875005722046},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.47933539748191833},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.4433596432209015},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.43037763237953186},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.40359461307525635},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.38123220205307007},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34930771589279175},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26889023184776306},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23243433237075806},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.2108037769794464},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1980099380016327},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13890182971954346}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7893095016479492},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.7653535008430481},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6729375123977661},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.5994399785995483},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5312051177024841},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5230061411857605},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.49490875005722046},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.47933539748191833},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.4433596432209015},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.43037763237953186},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40359461307525635},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.38123220205307007},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34930771589279175},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26889023184776306},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23243433237075806},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.2108037769794464},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1980099380016327},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13890182971954346}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007778","descriptor_name":"Lactobacillus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007778","descriptor_name":"Lactobacillus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007778","descriptor_name":"Lactobacillus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007778","descriptor_name":"Lactobacillus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007778","descriptor_name":"Lactobacillus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007778","descriptor_name":"Lactobacillus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-13-33","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-33","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-33","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22335941","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22335941","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:2c2ec91fb88649a4a0fc01013b391a4f","is_oa":false,"landing_page_url":"https://doaj.org/article/2c2ec91fb88649a4a0fc01013b391a4f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss 1, p 33 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2388990","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3386020","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:helda.helsinki.fi:10138/162790","is_oa":true,"landing_page_url":"http://hdl.handle.net/10138/162790","pdf_url":null,"source":{"id":"https://openalex.org/S4210213322","display_name":"Ty\u00f6v\u00e4entutkimus Vuosikirja","issn_l":"0784-1272","issn":["0784-1272","1459-7780"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-33","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-33","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-33","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1975589113.pdf","grobid_xml":"https://content.openalex.org/works/W1975589113.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1490137556","https://openalex.org/W1647671624","https://openalex.org/W1944367502","https://openalex.org/W1965404910","https://openalex.org/W1991570251","https://openalex.org/W1994441981","https://openalex.org/W2004548026","https://openalex.org/W2009234149","https://openalex.org/W2045534443","https://openalex.org/W2048512322","https://openalex.org/W2048947602","https://openalex.org/W2060797027","https://openalex.org/W2068886104","https://openalex.org/W2076048958","https://openalex.org/W2096939566","https://openalex.org/W2097263991","https://openalex.org/W2097542211","https://openalex.org/W2099393019","https://openalex.org/W2103017472","https://openalex.org/W2105157799","https://openalex.org/W2115595474","https://openalex.org/W2116423958","https://openalex.org/W2119027485","https://openalex.org/W2122613768","https://openalex.org/W2130669817","https://openalex.org/W2130956021","https://openalex.org/W2132152420","https://openalex.org/W2133579817","https://openalex.org/W2133790733","https://openalex.org/W2140735973","https://openalex.org/W2141148930","https://openalex.org/W2141885858","https://openalex.org/W2143592941","https://openalex.org/W2146389940","https://openalex.org/W2158714788","https://openalex.org/W2161062388","https://openalex.org/W2164760520","https://openalex.org/W2167318540","https://openalex.org/W2168048337","https://openalex.org/W2169210854","https://openalex.org/W4210623056","https://openalex.org/W4238290165"],"related_works":["https://openalex.org/W2159663778","https://openalex.org/W2065993463","https://openalex.org/W2181899571","https://openalex.org/W2135470984","https://openalex.org/W2082535576","https://openalex.org/W1568877569","https://openalex.org/W2015809665","https://openalex.org/W2935275081","https://openalex.org/W2111105050","https://openalex.org/W2348674368"],"abstract_inverted_index":{"BACKGROUND:":[0],"Automated":[1],"function":[2,19,25,250],"prediction":[3,148],"has":[4,36,92],"played":[5],"a":[6,94,150,183,280],"central":[7],"role":[8],"in":[9,39,73,99,165,185,215],"determining":[10],"the":[11,47,67,86,109,160,175,189,193,202,209,216,226,233,269],"biological":[12],"functions":[13],"of":[14,46,83,112,130,152,162,167,192,218,228,236,271],"bacterial":[15,40,113,168,248,272],"proteins.":[16],"Typically,":[17],"protein":[18,114,131,249],"annotation":[20,111,144,176],"relies":[21],"on":[22,117,149],"homology,":[23],"and":[24,56,145,208,258,274,279],"is":[26,44,51,243,253],"inferred":[27],"from":[28],"other":[29],"proteins":[30,169,181],"with":[31,85,126,154,170],"similar":[32],"sequences.":[33,115],"This":[34,90],"approach":[35],"become":[37],"popular":[38],"genomics":[41,64],"because":[42,57],"it":[43,58],"one":[45],"few":[48],"methods":[49],"that":[50,205],"practical":[52,254],"for":[53,97,108,178,247,255],"large":[54],"datasets":[55],"does":[59,259],"not":[60,260],"require":[61,261],"additional":[62],"functional":[63,110,156,190],"experiments.":[65],"However,":[66],"existing":[68],"solutions":[69],"produce":[70],"erroneous":[71],"predictions":[72],"many":[74],"cases,":[75],"especially":[76],"when":[77],"query":[78,124,194],"sequences":[79,125,135,153],"have":[80],"low":[81],"levels":[82],"identity":[84],"annotated":[87],"source":[88],"protein.":[89,195],"problem":[91],"created":[93],"pressing":[95],"need":[96],"improvements":[98],"homology-based":[100],"annotation.":[101],"RESULTS:":[102],"We":[103,158,173,223],"present":[104],"an":[105,244],"automated":[106],"method":[107,200,246,267,278],"Based":[116],"sequence":[118,221,263],"similarity":[119],"searches,":[120],"BLANNOTATOR":[121,242],"accurately":[122],"annotates":[123],"one-line":[127],"summary":[128],"descriptions":[129],"function.":[132],"It":[133,252],"groups":[134],"identified":[136],"by":[137,231],"BLAST":[138],"into":[139],"subsets":[140],"according":[141],"to":[142],"their":[143],"bases":[146],"its":[147,186],"set":[151],"consistent":[155],"information.":[157],"show":[159],"results":[161],"BLANNOTATOR's":[163],"performance":[164,211],"sets":[166],"known":[171],"functions.":[172],"simulated":[174],"process":[177],"3090":[179],"SWISS-PROT":[180],"using":[182],"database":[184],"state":[187],"preceding":[188],"characterisation":[191],"For":[196],"this":[197,266],"dataset,":[198],"our":[199,229],"outperformed":[201],"five":[203],"others":[204],"we":[206],"tested,":[207],"improved":[210],"was":[212],"maintained":[213],"even":[214],"absence":[217],"highly":[219],"related":[220],"hits.":[222],"further":[224],"demonstrate":[225],"value":[227],"tool":[230],"analysing":[232],"putative":[234],"proteome":[235],"Lactobacillus":[237],"crispatus":[238],"strain":[239],"ST1.":[240],"CONCLUSIONS:":[241],"accurate":[245],"prediction.":[251],"genome-scale":[256],"data":[257],"pre-existing":[262],"clustering;":[264],"thus,":[265],"suits":[268],"needs":[270],"genome":[273],"metagenome":[275],"researchers.":[276],"The":[277],"web-server":[281],"are":[282],"available":[283],"at":[284],"http://ekhidna.biocenter.helsinki.fi/poxo/blannotator/.":[285]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
