{"id":"https://openalex.org/W2111141472","doi":"https://doi.org/10.1186/1471-2105-13-310","title":"Automatic design of decision-tree induction algorithms tailored to flexible-receptor docking data","display_name":"Automatic design of decision-tree induction algorithms tailored to flexible-receptor docking data","publication_year":2012,"publication_date":"2012-11-21","ids":{"openalex":"https://openalex.org/W2111141472","doi":"https://doi.org/10.1186/1471-2105-13-310","mag":"2111141472","pmid":"https://pubmed.ncbi.nlm.nih.gov/23171000"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-310","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-310","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-310","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-310","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039629929","display_name":"Rodrigo C. Barros","orcid":"https://orcid.org/0000-0002-0782-9482"},"institutions":[{"id":"https://openalex.org/I177909021","display_name":"Universidade Federal de S\u00e3o Carlos","ror":"https://ror.org/00qdc6m37","country_code":"BR","type":"education","lineage":["https://openalex.org/I177909021"]},{"id":"https://openalex.org/I4210092357","display_name":"Institute of Mathematics and Computer Science","ror":"https://ror.org/00fy4at53","country_code":"MD","type":"facility","lineage":["https://openalex.org/I112090838","https://openalex.org/I4210092357"]},{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR","MD"],"is_corresponding":true,"raw_author_name":"Rodrigo C Barros","raw_affiliation_strings":["University of S\u00e3o Paulo, S\u00e3o Carlos, Brazil. rcbarros@icmc.usp.br","Univ. of Sao Paulo, Sao Carlos, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of S\u00e3o Paulo, S\u00e3o Carlos, Brazil. rcbarros@icmc.usp.br","institution_ids":["https://openalex.org/I4210092357"]},{"raw_affiliation_string":"Univ. of Sao Paulo, Sao Carlos, Brazil","institution_ids":["https://openalex.org/I177909021","https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040732155","display_name":"Ana T. Winck","orcid":null},"institutions":[{"id":"https://openalex.org/I33501960","display_name":"Universidade Federal de Santa Maria","ror":"https://ror.org/01b78mz79","country_code":"BR","type":"education","lineage":["https://openalex.org/I33501960"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Ana T Winck","raw_affiliation_strings":["Federal University of Santa Maria, Santa Maria, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Federal University of Santa Maria, Santa Maria, Brazil","institution_ids":["https://openalex.org/I33501960"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086333993","display_name":"Karina Machado","orcid":"https://orcid.org/0000-0002-8966-5708"},"institutions":[{"id":"https://openalex.org/I126460647","display_name":"Universidade Federal do Rio Grande","ror":"https://ror.org/05hpfkn88","country_code":"BR","type":"education","lineage":["https://openalex.org/I126460647"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Karina S Machado","raw_affiliation_strings":["Federal University of Rio Grande, Rio Grande, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Federal University of Rio Grande, Rio Grande, Brazil","institution_ids":["https://openalex.org/I126460647"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090283789","display_name":"M\u00e1rcio P. Basgalupp","orcid":"https://orcid.org/0000-0002-2005-1249"},"institutions":[{"id":"https://openalex.org/I88273585","display_name":"Universidade Federal de S\u00e3o Paulo","ror":"https://ror.org/02k5swt12","country_code":"BR","type":"education","lineage":["https://openalex.org/I88273585"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"M\u00e1rcio P Basgalupp","raw_affiliation_strings":["Federal University of S\u00e3o Paulo, S\u00e3o Jos\u00e9 dos Campos, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Federal University of S\u00e3o Paulo, S\u00e3o Jos\u00e9 dos Campos, Brazil","institution_ids":["https://openalex.org/I88273585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079499583","display_name":"Andr\u00e9 C. P. L. F. de Carvalho","orcid":"https://orcid.org/0000-0002-4765-6459"},"institutions":[{"id":"https://openalex.org/I177909021","display_name":"Universidade Federal de S\u00e3o Carlos","ror":"https://ror.org/00qdc6m37","country_code":"BR","type":"education","lineage":["https://openalex.org/I177909021"]},{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Andr\u00e9 CPLF de Carvalho","raw_affiliation_strings":["University of S\u00e3o Paulo, S\u00e3o Carlos, Brazil","Univ. of Sao Paulo, Sao Carlos, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of S\u00e3o Paulo, S\u00e3o Carlos, Brazil","institution_ids":["https://openalex.org/I17974374"]},{"raw_affiliation_string":"Univ. of Sao Paulo, Sao Carlos, Brazil","institution_ids":["https://openalex.org/I177909021","https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019215692","display_name":"Duncan D. Ruiz","orcid":"https://orcid.org/0000-0002-4071-3246"},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Duncan D Ruiz","raw_affiliation_strings":["Pontifical Catholic University of Rio Grande do Sul, Porto Alegre, Brazil","Pontifical Catholic University of Rio Grande do Sul Porto Alegre Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pontifical Catholic University of Rio Grande do Sul, Porto Alegre, Brazil","institution_ids":["https://openalex.org/I45643870"]},{"raw_affiliation_string":"Pontifical Catholic University of Rio Grande do Sul Porto Alegre Brazil","institution_ids":["https://openalex.org/I45643870"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064713906","display_name":"Osmar Norberto de Souza","orcid":"https://orcid.org/0000-0002-4602-1208"},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Osmar Norberto de Souza","raw_affiliation_strings":["Pontifical Catholic University of Rio Grande do Sul, Porto Alegre, Brazil","Pontifical Catholic University of Rio Grande do Sul Porto Alegre Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pontifical Catholic University of Rio Grande do Sul, Porto Alegre, Brazil","institution_ids":["https://openalex.org/I45643870"]},{"raw_affiliation_string":"Pontifical Catholic University of Rio Grande do Sul Porto Alegre Brazil","institution_ids":["https://openalex.org/I45643870"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5039629929"],"corresponding_institution_ids":["https://openalex.org/I177909021","https://openalex.org/I17974374","https://openalex.org/I4210092357"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":4.5127,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.94980522,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"13","issue":"1","first_page":"310","last_page":"310"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9535999894142151,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9535999894142151,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.008799999952316284,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.006200000178068876,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7403901815414429},{"id":"https://openalex.org/keywords/decision-tree","display_name":"Decision tree","score":0.7145723700523376},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5526981353759766},{"id":"https://openalex.org/keywords/inha","display_name":"INHA","score":0.48347240686416626},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.48186740279197693},{"id":"https://openalex.org/keywords/decision-tree-learning","display_name":"Decision tree learning","score":0.45074230432510376},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4346574544906616},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.4278803765773773},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4265854060649872},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.40955308079719543},{"id":"https://openalex.org/keywords/mycobacterium-tuberculosis","display_name":"Mycobacterium tuberculosis","score":0.16407281160354614},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09431019425392151}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7403901815414429},{"id":"https://openalex.org/C84525736","wikidata":"https://www.wikidata.org/wiki/Q831366","display_name":"Decision tree","level":2,"score":0.7145723700523376},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5526981353759766},{"id":"https://openalex.org/C2780687663","wikidata":"https://www.wikidata.org/wiki/Q18027924","display_name":"INHA","level":4,"score":0.48347240686416626},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.48186740279197693},{"id":"https://openalex.org/C5481197","wikidata":"https://www.wikidata.org/wiki/Q16766476","display_name":"Decision tree learning","level":3,"score":0.45074230432510376},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4346574544906616},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.4278803765773773},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4265854060649872},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.40955308079719543},{"id":"https://openalex.org/C2777975735","wikidata":"https://www.wikidata.org/wiki/Q130971","display_name":"Mycobacterium tuberculosis","level":3,"score":0.16407281160354614},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09431019425392151},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000995","descriptor_name":"Antitubercular Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000995","descriptor_name":"Antitubercular Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000995","descriptor_name":"Antitubercular Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003663","descriptor_name":"Decision Trees","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003663","descriptor_name":"Decision Trees","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003663","descriptor_name":"Decision Trees","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D010088","descriptor_name":"Oxidoreductases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010088","descriptor_name":"Oxidoreductases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010088","descriptor_name":"Oxidoreductases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019020","descriptor_name":"Directed Molecular Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019020","descriptor_name":"Directed Molecular Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019020","descriptor_name":"Directed Molecular Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":12,"locations":[{"id":"doi:10.1186/1471-2105-13-310","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-310","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-310","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23171000","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23171000","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:www.producao.usp.br:BDPI/35838","is_oa":false,"landing_page_url":"http://www.producao.usp.br/handle/BDPI/35838","pdf_url":null,"source":{"id":"https://openalex.org/S4306402433","display_name":"Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da USP","raw_type":"publishedVersion"},{"id":"pmh:002316491","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/1471-2105-13-310","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da USP (Biblioteca Digital da Produ\u00e7\u00e3o Intelectual)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:americanae.aecid.es:1625920","is_oa":true,"landing_page_url":"http://repositorio.furg.br/handle/1/4925","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da FURG (RI FURG)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:americanae.aecid.es:3200053","is_oa":true,"landing_page_url":"http://americanae.aecid.es/americanae/es/registros/registro.do?tipoRegistro=MTD&idBib=3200053","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da UNIFESP","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:f9806a04b5194c1bb309d697a0d03b8d","is_oa":true,"landing_page_url":"https://doaj.org/article/f9806a04b5194c1bb309d697a0d03b8d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss 1, p 310 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2537114","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3534569","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:meriva.pucrs.br:10923/13033","is_oa":true,"landing_page_url":"http://hdl.handle.net/10923/13033","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:PUC_RS","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3534569","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3534569","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repositorio.furg.br:1/4925","is_oa":true,"landing_page_url":"http://www.biomedcentral.com/1471-2105/13/310>.","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:FURG","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:repositorio.unifesp.br:11600/35511","is_oa":true,"landing_page_url":"http://repositorio.unifesp.br/handle/11600/35511","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:UNIFESP","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-310","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-310","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-310","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.4300000071525574,"display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2111141472.pdf","grobid_xml":"https://content.openalex.org/works/W2111141472.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W69407335","https://openalex.org/W1496383788","https://openalex.org/W1504694836","https://openalex.org/W1519169075","https://openalex.org/W1534159861","https://openalex.org/W1536647479","https://openalex.org/W1565377632","https://openalex.org/W1594031697","https://openalex.org/W1602363634","https://openalex.org/W1780185704","https://openalex.org/W1965534409","https://openalex.org/W1972953764","https://openalex.org/W1978069786","https://openalex.org/W1990533776","https://openalex.org/W1999011285","https://openalex.org/W2002135261","https://openalex.org/W2003127541","https://openalex.org/W2004276483","https://openalex.org/W2006519670","https://openalex.org/W2016845974","https://openalex.org/W2022672249","https://openalex.org/W2027887879","https://openalex.org/W2028236657","https://openalex.org/W2036157684","https://openalex.org/W2044912609","https://openalex.org/W2047509756","https://openalex.org/W2049351016","https://openalex.org/W2058713395","https://openalex.org/W2058813623","https://openalex.org/W2061842742","https://openalex.org/W2062390390","https://openalex.org/W2062882213","https://openalex.org/W2072180710","https://openalex.org/W2079944366","https://openalex.org/W2095537056","https://openalex.org/W2117610468","https://openalex.org/W2120199131","https://openalex.org/W2121780366","https://openalex.org/W2125055259","https://openalex.org/W2127059336","https://openalex.org/W2128420091","https://openalex.org/W2132295452","https://openalex.org/W2134266957","https://openalex.org/W2134789671","https://openalex.org/W2142907906","https://openalex.org/W2146424733","https://openalex.org/W2147195544","https://openalex.org/W2147810971","https://openalex.org/W2148423395","https://openalex.org/W2149706766","https://openalex.org/W2158534713","https://openalex.org/W2160356737","https://openalex.org/W2160671582","https://openalex.org/W2163533083","https://openalex.org/W2171674404","https://openalex.org/W2329627532","https://openalex.org/W2421886710","https://openalex.org/W2482589566","https://openalex.org/W2911964244","https://openalex.org/W3085162807","https://openalex.org/W3125730391","https://openalex.org/W3145828585","https://openalex.org/W3150457824","https://openalex.org/W4253867444"],"related_works":["https://openalex.org/W2591672004","https://openalex.org/W1982169401","https://openalex.org/W2356463514","https://openalex.org/W4319437832","https://openalex.org/W2592385415","https://openalex.org/W2030894524","https://openalex.org/W4243803609","https://openalex.org/W2350430350","https://openalex.org/W102063058","https://openalex.org/W2006686080"],"abstract_inverted_index":{"BACKGROUND:":[0],"This":[1,23],"paper":[2],"addresses":[3],"the":[4,7,56,131,147,197,212,216,223,253,256,260],"prediction":[5,254],"of":[6,10,12,59,134,149,157,188,215,225,255,262],"free":[8,57,257],"energy":[9,58,258],"binding":[11,142,155,261],"a":[13,65,73,112,120,240,249,263,267],"drug":[14,29,34,159,264],"candidate":[15,265],"with":[16,20,168,201,266],"enzyme":[17],"InhA":[18],"associated":[19],"Mycobacterium":[21],"tuberculosis.":[22],"problem":[24],"is":[25,49,186,248],"found":[26],"within":[27],"rational":[28],"design,":[30],"where":[31],"interactions":[32],"between":[33],"candidates":[35,160],"and":[36,97,129,163,175,206],"target":[37],"proteins":[38],"are":[39,92,100],"verified":[40],"through":[41],"molecular":[42,245],"docking":[43,246],"simulations.":[44],"In":[45,124,208],"this":[46,125,230],"application,":[47],"it":[48,116],"important":[50],"not":[51],"only":[52],"to":[53,63,94,139,161,170,203,244],"correctly":[54],"predict":[55],"binding,":[60],"but":[61,108],"also":[62],"provide":[64,211],"comprehensible":[66,226],"model":[67],"that":[68,89,114,183,194,237],"could":[69],"be":[70],"validated":[71],"by":[72,219],"domain":[74],"specialist.":[75],"Decision-tree":[76],"induction":[77,103,136,192],"algorithms":[78,104,137,193],"have":[79],"been":[80],"successfully":[81],"used":[82],"in":[83,229],"drug-design":[84],"related":[85],"applications,":[86],"specially":[87],"considering":[88],"decision":[90,171],"trees":[91],"simple":[93],"understand,":[95],"interpret,":[96],"validate.":[98],"There":[99],"several":[101],"decision-tree":[102,135,191,241],"available":[105],"for":[106,119,153,252],"general-use,":[107],"each":[109],"one":[110],"has":[111],"bias":[113],"makes":[115],"more":[117],"suitable":[118],"particular":[121,140,231],"data":[122,143,247],"distribution.":[123],"article,":[126],"we":[127,164,210],"propose":[128],"investigate":[130,146],"automatic":[132],"design":[133],"tailored":[138,243],"drug-enzyme":[141],"sets.":[144],"We":[145,235],"performance":[148],"our":[150,166,184,220],"new":[151],"method":[152,185],"evaluating":[154],"conformations":[156],"different":[158],"InhA,":[162],"analyze":[165],"findings":[167],"respect":[169,202],"tree":[172],"accuracy,":[173],"comprehensibility,":[174],"biological":[176,213],"relevance.":[177],"RESULTS:":[178],"The":[179],"empirical":[180],"analysis":[181],"indicates":[182],"capable":[187],"automatically":[189,238],"generating":[190],"significantly":[195],"outperform":[196],"traditional":[198],"C4.5":[199],"algorithm":[200,242],"both":[204],"accuracy":[205],"comprehensibility.":[207],"addition,":[209],"interpretation":[214],"rules":[217],"generated":[218],"approach,":[221],"reinforcing":[222],"importance":[224],"predictive":[227],"models":[228],"bioinformatics":[232],"application.":[233],"CONCLUSIONS:":[234],"conclude":[236],"designing":[239],"promising":[250],"alternative":[251],"from":[259],"flexible-receptor.":[268]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":5}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
