{"id":"https://openalex.org/W2149600008","doi":"https://doi.org/10.1186/1471-2105-13-261","title":"Semantic similarity in the biomedical domain: an evaluation across knowledge sources","display_name":"Semantic similarity in the biomedical domain: an evaluation across knowledge sources","publication_year":2012,"publication_date":"2012-10-10","ids":{"openalex":"https://openalex.org/W2149600008","doi":"https://doi.org/10.1186/1471-2105-13-261","mag":"2149600008","pmid":"https://pubmed.ncbi.nlm.nih.gov/23046094"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-261","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-261","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-261","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-261","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019446513","display_name":"Vijay Garla","orcid":null},"institutions":[{"id":"https://openalex.org/I2802730090","display_name":"Yale Cancer Center","ror":"https://ror.org/03j7sze86","country_code":"US","type":"facility","lineage":["https://openalex.org/I2802730090","https://openalex.org/I4210117499","https://openalex.org/I4210165192"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Vijay N Garla","raw_affiliation_strings":["Yale Center for Medical Informatics, Yale University, New Haven, CT 06520-8009, USA. vijay.garla@yale.edu","Yale Center for Medical Informatics, Yale University, 300 George Street, Suite 501, New Haven, CT, 06520-8009, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Yale Center for Medical Informatics, Yale University, New Haven, CT 06520-8009, USA. vijay.garla@yale.edu","institution_ids":["https://openalex.org/I32971472","https://openalex.org/I2802730090"]},{"raw_affiliation_string":"Yale Center for Medical Informatics, Yale University, 300 George Street, Suite 501, New Haven, CT, 06520-8009, USA","institution_ids":["https://openalex.org/I2802730090","https://openalex.org/I32971472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038171056","display_name":"Cynthia Brandt","orcid":"https://orcid.org/0000-0001-8179-1796"},"institutions":[{"id":"https://openalex.org/I4210086971","display_name":"VA Connecticut Healthcare System","ror":"https://ror.org/000rgm762","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210086971","https://openalex.org/I4210095851"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I2802730090","display_name":"Yale Cancer Center","ror":"https://ror.org/03j7sze86","country_code":"US","type":"facility","lineage":["https://openalex.org/I2802730090","https://openalex.org/I4210117499","https://openalex.org/I4210165192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cynthia Brandt","raw_affiliation_strings":["Connecticut VA Healthcare System, Bldg. 35A, Room 213 (11-ACSLG), 950 Campbell Avenue, West Haven, CT, 06516, USA","Yale Center for Medical Informatics, Yale University, 300 George Street, Suite 501, New Haven, CT, 06520-8009, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Connecticut VA Healthcare System, Bldg. 35A, Room 213 (11-ACSLG), 950 Campbell Avenue, West Haven, CT, 06516, USA","institution_ids":["https://openalex.org/I4210086971"]},{"raw_affiliation_string":"Yale Center for Medical Informatics, Yale University, 300 George Street, Suite 501, New Haven, CT, 06520-8009, USA","institution_ids":["https://openalex.org/I2802730090","https://openalex.org/I32971472"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5019446513"],"corresponding_institution_ids":["https://openalex.org/I2802730090","https://openalex.org/I32971472"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":12.3818,"has_fulltext":true,"cited_by_count":91,"citation_normalized_percentile":{"value":0.98674145,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"13","issue":"1","first_page":"261","last_page":"261"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.5669000148773193,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.5669000148773193,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.1371999979019165,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.1216999962925911,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.866154670715332},{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.8518840074539185},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.8197781443595886},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7446345686912537},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6627704501152039},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5679206848144531},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5358176827430725},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5149438977241516},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5092021822929382},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4716110825538635},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4581519663333893},{"id":"https://openalex.org/keywords/distributional-semantics","display_name":"Distributional semantics","score":0.4376089572906494},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.4306179881095886},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.3021702468395233},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10563653707504272}],"concepts":[{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.866154670715332},{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.8518840074539185},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.8197781443595886},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7446345686912537},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6627704501152039},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5679206848144531},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5358176827430725},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5149438977241516},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5092021822929382},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4716110825538635},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4581519663333893},{"id":"https://openalex.org/C2778828372","wikidata":"https://www.wikidata.org/wiki/Q5283209","display_name":"Distributional semantics","level":3,"score":0.4376089572906494},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.4306179881095886},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.3021702468395233},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10563653707504272},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-13-261","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-261","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-261","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23046094","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23046094","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:bb2bbd9c7b374523a0b5bdeade18f9a6","is_oa":false,"landing_page_url":"https://doaj.org/article/bb2bbd9c7b374523a0b5bdeade18f9a6","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss 1, p 261 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2536772","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3533586","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3533586","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3533586","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-261","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-261","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-261","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5199999809265137,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G2375872492","display_name":null,"funder_award_id":"T15 LM07056","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3191182498","display_name":null,"funder_award_id":"UL1 RR024139","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G7281427601","display_name":null,"funder_award_id":"RR024139","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G7420383591","display_name":null,"funder_award_id":"UL1 RR024139","funder_id":"https://openalex.org/F4320316438","funder_display_name":"Georgia Clinical and Translational Science Alliance"},{"id":"https://openalex.org/G7858554110","display_name":null,"funder_award_id":"UL1 RR024139","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7884013679","display_name":null,"funder_award_id":"CTSA Grant Number UL1 RR024139","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G8967675890","display_name":null,"funder_award_id":"HIR 08-374","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"}],"funders":[{"id":"https://openalex.org/F4320316438","display_name":"Georgia Clinical and Translational Science Alliance","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2149600008.pdf","grobid_xml":"https://content.openalex.org/works/W2149600008.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W99501648","https://openalex.org/W172850475","https://openalex.org/W173617392","https://openalex.org/W186091728","https://openalex.org/W187228978","https://openalex.org/W189967632","https://openalex.org/W202767273","https://openalex.org/W1529522905","https://openalex.org/W1549088681","https://openalex.org/W1550258693","https://openalex.org/W1569415500","https://openalex.org/W1569660094","https://openalex.org/W1647729745","https://openalex.org/W1651266083","https://openalex.org/W1668989518","https://openalex.org/W1778696417","https://openalex.org/W1907013787","https://openalex.org/W1959533457","https://openalex.org/W1971220772","https://openalex.org/W1979325497","https://openalex.org/W1988624983","https://openalex.org/W1990610890","https://openalex.org/W2000963751","https://openalex.org/W2025428542","https://openalex.org/W2053449218","https://openalex.org/W2066636486","https://openalex.org/W2072640685","https://openalex.org/W2084377579","https://openalex.org/W2087739686","https://openalex.org/W2100935296","https://openalex.org/W2112646584","https://openalex.org/W2117463461","https://openalex.org/W2117805756","https://openalex.org/W2127128140","https://openalex.org/W2130173309","https://openalex.org/W2135658787","https://openalex.org/W2136449704","https://openalex.org/W2136480620","https://openalex.org/W2136930489","https://openalex.org/W2140581050","https://openalex.org/W2146089916","https://openalex.org/W2149801387","https://openalex.org/W2154439800","https://openalex.org/W2161443453","https://openalex.org/W2166776180","https://openalex.org/W2170344111","https://openalex.org/W2170682101","https://openalex.org/W2171548451","https://openalex.org/W2171690228","https://openalex.org/W2303098424","https://openalex.org/W2426119782","https://openalex.org/W2511623037","https://openalex.org/W2531563875","https://openalex.org/W2611726225","https://openalex.org/W2618735189","https://openalex.org/W2694849690","https://openalex.org/W2791753912","https://openalex.org/W2911372532","https://openalex.org/W2912042784","https://openalex.org/W2912485311","https://openalex.org/W2912559793","https://openalex.org/W2913886681","https://openalex.org/W4233775226","https://openalex.org/W4255198209"],"related_works":["https://openalex.org/W2405923535","https://openalex.org/W1511848092","https://openalex.org/W1708042184","https://openalex.org/W2044298438","https://openalex.org/W2240723216","https://openalex.org/W2150771407","https://openalex.org/W2186444170","https://openalex.org/W2181479088","https://openalex.org/W2795453480","https://openalex.org/W31701444"],"abstract_inverted_index":{"BACKGROUND:":[0],"Semantic":[1,213],"similarity":[2,6,22,129,185,197,211,214,289,320,336],"measures":[3,55,63,93,101,117,130,169,198,215,241,290,310,316,337],"estimate":[4],"the":[5,24,71,95,119,132,139,164,177,205,218],"between":[7,155],"concepts,":[8],"and":[9,34,48,51,56,85,143,179,192,204,224,245,257,312],"play":[10],"an":[11,304],"important":[12],"role":[13],"in":[14,23,65,94,131,346],"many":[15],"text":[16],"processing":[17],"tasks.":[18],"Approaches":[19],"to":[20,67,78,151,253,278,294,329,342],"semantic":[21,49,184,196,210,280,288,319,335],"biomedical":[25,96,133,172],"domain":[26,97,134],"can":[27],"be":[28],"roughly":[29],"divided":[30],"into":[31],"knowledge":[32,42,69,103,173,190,308],"based":[33,36,39,104,116,191,195,216,229,240,287,309],"distributional":[35,100,122,246,297,315,330],"methods.":[37,88],"Knowledge":[38,286],"approaches":[40],"utilize":[41,339],"sources":[43,174],"such":[44,175],"as":[45,176,261,266,299],"dictionaries,":[46],"taxonomies,":[47],"networks,":[50],"include":[52,82,135],"path":[53,105],"finding":[54,106],"intrinsic":[57,114],"information":[58],"content":[59],"(IC)":[60],"measures.":[61,247,331],"Distributional":[62],"utilize,":[64],"addition":[66],"a":[68,76,274,326],"source,":[70,268],"distribution":[72],"of":[73,91,121,125,128,163,167,263,334],"concepts":[74],"within":[75],"corpus":[77,83,193],"compute":[79,279,295],"similarity;":[80],"these":[81,92,168],"IC":[84,115,194,239],"context":[86],"vector":[87],"Prior":[89],"evaluations":[90,127,162,333],"showed":[98],"that":[99,113,323],"outperform":[102],"methods;":[107],"but":[108],"more":[109,292],"recent":[110],"studies":[111],"suggested":[112],"exceed":[118],"accuracy":[120],"approaches.":[123],"Limitations":[124],"previous":[126],"their":[136,144],"focus":[137],"on":[138,146,170,180,207,217,231,317],"SNOMED":[140,201,222,232],"CT":[141,223,233],"ontology,":[142],"reliance":[145],"small":[147],"benchmarks":[148,340],"not":[149,302],"powered":[150,341],"detect":[152,343],"significant":[153,344],"differences":[154,345],"measure":[156,347],"accuracy.":[157,348],"There":[158],"have":[159],"been":[160],"few":[161],"relative":[165],"performance":[166],"other":[171],"UMLS,":[178,219],"larger,":[181],"recently":[182,208],"developed":[183,209,260],"benchmarks.":[186,212],"RESULTS:":[187],"We":[188,248,272],"evaluated":[189],"derived":[199],"from":[200],"CT,":[202],"MeSH,":[203,225],"UMLS":[206],"which":[220],"contains":[221],"significantly":[226,242,311],"outperformed":[227,243,314],"those":[228],"solely":[230],"or":[234],"MeSH":[235],"across":[236],"evaluations.":[237],"Intrinsic":[238],"path-based":[244],"released":[249],"all":[250,258],"code":[251],"required":[252],"reproduce":[254],"our":[255],"results":[256],"tools":[259],"part":[262],"this":[264],"study":[265],"open":[267],"available":[269,282],"under":[270,283],"http://code.google.com/p/ytex.":[271],"provide":[273],"publicly-accessible":[275],"web":[276],"service":[277],"similarity,":[281],"http://informatics.med.yale.edu/ytex.web/.":[284],"CONCLUSIONS:":[285],"are":[291,325],"practical":[293,327],"than":[296],"measures,":[298],"they":[300,324],"do":[301],"require":[303],"external":[305],"corpus.":[306],"Furthermore,":[307],"meaningfully":[313],"large":[318],"benchmarks,":[321],"suggesting":[322],"alternative":[328],"Future":[332],"should":[338]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":14},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":3}],"updated_date":"2026-06-04T09:04:59.091469","created_date":"2025-10-10T00:00:00"}
