{"id":"https://openalex.org/W2009264880","doi":"https://doi.org/10.1186/1471-2105-13-211","title":"NetiNeti: discovery of scientific names from text using machine learning methods","display_name":"NetiNeti: discovery of scientific names from text using machine learning methods","publication_year":2012,"publication_date":"2012-08-22","ids":{"openalex":"https://openalex.org/W2009264880","doi":"https://doi.org/10.1186/1471-2105-13-211","mag":"2009264880","pmid":"https://pubmed.ncbi.nlm.nih.gov/22913485"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-211","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-211","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-211","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-211","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076179481","display_name":"Lakshmi Manohar Akella","orcid":null},"institutions":[{"id":"https://openalex.org/I1338920048","display_name":"Marine Biological Laboratory","ror":"https://ror.org/046dg4z72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1338920048"]},{"id":"https://openalex.org/I4210124444","display_name":"Sears Holdings (United States)","ror":"https://ror.org/02sx1y706","country_code":"US","type":"company","lineage":["https://openalex.org/I4210124444"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lakshmi Manohar Akella","raw_affiliation_strings":["MBLWHOI Library, Marine Biological Laboratory, Woods Hole, MA, USA. manohar.akella@gmail.com","Sears Holdings Corporation, Hoffman Estates, USA","MBLWHOI Library, Marine Biological Laboratory, Woods Hole, USA"],"affiliations":[{"raw_affiliation_string":"MBLWHOI Library, Marine Biological Laboratory, Woods Hole, MA, USA. manohar.akella@gmail.com","institution_ids":["https://openalex.org/I1338920048"]},{"raw_affiliation_string":"Sears Holdings Corporation, Hoffman Estates, USA","institution_ids":["https://openalex.org/I4210124444"]},{"raw_affiliation_string":"MBLWHOI Library, Marine Biological Laboratory, Woods Hole, USA","institution_ids":["https://openalex.org/I1338920048"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112183239","display_name":"Catherine N. Norton","orcid":null},"institutions":[{"id":"https://openalex.org/I1338920048","display_name":"Marine Biological Laboratory","ror":"https://ror.org/046dg4z72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1338920048"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Catherine N Norton","raw_affiliation_strings":["MBLWHOI Library, Marine Biological Laboratory, Woods Hole, MA, USA","MBLWHOI Library, Marine Biological Laboratory, Woods Hole, USA"],"affiliations":[{"raw_affiliation_string":"MBLWHOI Library, Marine Biological Laboratory, Woods Hole, MA, USA","institution_ids":["https://openalex.org/I1338920048"]},{"raw_affiliation_string":"MBLWHOI Library, Marine Biological Laboratory, Woods Hole, USA","institution_ids":["https://openalex.org/I1338920048"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102728055","display_name":"Holly Miller","orcid":"https://orcid.org/0000-0002-9076-5335"},"institutions":[{"id":"https://openalex.org/I1338920048","display_name":"Marine Biological Laboratory","ror":"https://ror.org/046dg4z72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1338920048"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Holly Miller","raw_affiliation_strings":["MBLWHOI Library, Marine Biological Laboratory, Woods Hole, MA, USA","MBLWHOI Library, Marine Biological Laboratory, Woods Hole, USA"],"affiliations":[{"raw_affiliation_string":"MBLWHOI Library, Marine Biological Laboratory, Woods Hole, MA, USA","institution_ids":["https://openalex.org/I1338920048"]},{"raw_affiliation_string":"MBLWHOI Library, Marine Biological Laboratory, Woods Hole, USA","institution_ids":["https://openalex.org/I1338920048"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5076179481"],"corresponding_institution_ids":["https://openalex.org/I1338920048","https://openalex.org/I4210124444"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.877,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.84968136,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"13","issue":"1","first_page":"211","last_page":"211"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.974399983882904,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7660948038101196},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.7398582100868225},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.5857316255569458},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.5467537641525269},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5203680396080017},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.5127788186073303},{"id":"https://openalex.org/keywords/recall","display_name":"Recall","score":0.4905833303928375},{"id":"https://openalex.org/keywords/scientific-literature","display_name":"Scientific literature","score":0.4870002865791321},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4832206964492798},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4613177478313446},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.4579121470451355},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37831127643585205},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3276287913322449},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.12226113677024841},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.1163572371006012},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0970907211303711}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7660948038101196},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.7398582100868225},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.5857316255569458},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.5467537641525269},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5203680396080017},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.5127788186073303},{"id":"https://openalex.org/C100660578","wikidata":"https://www.wikidata.org/wiki/Q18733","display_name":"Recall","level":2,"score":0.4905833303928375},{"id":"https://openalex.org/C2781083858","wikidata":"https://www.wikidata.org/wiki/Q17327049","display_name":"Scientific literature","level":2,"score":0.4870002865791321},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4832206964492798},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4613177478313446},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.4579121470451355},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37831127643585205},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3276287913322449},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.12226113677024841},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.1163572371006012},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0970907211303711},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-13-211","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-211","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-211","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22913485","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22913485","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:darchive.mblwhoilibrary.org:1912/6236","is_oa":true,"landing_page_url":"https://hdl.handle.net/1912/6236","pdf_url":null,"source":{"id":"https://openalex.org/S4306400781","display_name":"Open Access Server of the Woods Hole Scientific Community (Woods Hole Scientific Community)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:02f86feb0cb74483bbe23d09df6ddfc6","is_oa":true,"landing_page_url":"https://doaj.org/article/02f86feb0cb74483bbe23d09df6ddfc6","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss 1, p 211 (2012)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3542245","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3542245","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-211","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-211","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-211","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.5099999904632568,"display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306135","display_name":"Ellison Medical Foundation","ror":"https://ror.org/01pqy3846"},{"id":"https://openalex.org/F4320329591","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2009264880.pdf","grobid_xml":"https://content.openalex.org/works/W2009264880.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W135143996","https://openalex.org/W179179905","https://openalex.org/W202303397","https://openalex.org/W1505083828","https://openalex.org/W1531990095","https://openalex.org/W1557074680","https://openalex.org/W1590952807","https://openalex.org/W1773803948","https://openalex.org/W1833977909","https://openalex.org/W1898214464","https://openalex.org/W1967383767","https://openalex.org/W2001792610","https://openalex.org/W2002089154","https://openalex.org/W2023398713","https://openalex.org/W2023839984","https://openalex.org/W2045993505","https://openalex.org/W2061860783","https://openalex.org/W2066527056","https://openalex.org/W2096175520","https://openalex.org/W2097678794","https://openalex.org/W2100627415","https://openalex.org/W2101265630","https://openalex.org/W2102667697","https://openalex.org/W2117077912","https://openalex.org/W2120609672","https://openalex.org/W2120736575","https://openalex.org/W2139934466","https://openalex.org/W2140785063","https://openalex.org/W2141869602","https://openalex.org/W2142741334","https://openalex.org/W2151305645","https://openalex.org/W2160842254","https://openalex.org/W2161661053","https://openalex.org/W2165488387","https://openalex.org/W2186851407","https://openalex.org/W2477367047","https://openalex.org/W2586377029","https://openalex.org/W3029645440","https://openalex.org/W3122465213","https://openalex.org/W4231741839","https://openalex.org/W4251526109","https://openalex.org/W4285719527","https://openalex.org/W4293775970","https://openalex.org/W6600577311"],"related_works":["https://openalex.org/W2091344457","https://openalex.org/W160871148","https://openalex.org/W2398590682","https://openalex.org/W1535698018","https://openalex.org/W2896643207","https://openalex.org/W1965473057","https://openalex.org/W2162172169","https://openalex.org/W2949472725","https://openalex.org/W4283832524","https://openalex.org/W2009264880"],"abstract_inverted_index":{"We":[0],"present":[1],"NetiNeti,":[2],"a":[3],"machine":[4],"learning":[5],"based":[6],"approach":[7,19],"for":[8],"identification":[9],"and":[10],"discovery":[11],"of":[12],"scientific":[13],"names.":[14],"The":[15],"system":[16],"implementing":[17],"the":[18],"can":[20],"be":[21],"accessed":[22],"at":[23],"http://namefinding.ubio.org.":[24]},"counts_by_year":[{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":2}],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}
