{"id":"https://openalex.org/W2024106347","doi":"https://doi.org/10.1186/1471-2105-13-198","title":"GalaxyTBM: template-based modeling by building a reliable core and refining unreliable local regions","display_name":"GalaxyTBM: template-based modeling by building a reliable core and refining unreliable local regions","publication_year":2012,"publication_date":"2012-08-10","ids":{"openalex":"https://openalex.org/W2024106347","doi":"https://doi.org/10.1186/1471-2105-13-198","mag":"2024106347","pmid":"https://pubmed.ncbi.nlm.nih.gov/22883815"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-198","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-198","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-198","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-198","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5105988820","display_name":"Junsu Ko","orcid":null},"institutions":[{"id":"https://openalex.org/I4210123907","display_name":"National University College","ror":"https://ror.org/02hs8e066","country_code":"PR","type":"education","lineage":["https://openalex.org/I4210123907"]},{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR","PR"],"is_corresponding":true,"raw_author_name":"Junsu Ko","raw_affiliation_strings":["Department of Chemistry, Seoul National University, Seoul, 151-747, Republic of Korea. chaok@snu.ac.kr","Department of Chemistry; Seoul National University; Seoul Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Seoul National University, Seoul, 151-747, Republic of Korea. chaok@snu.ac.kr","institution_ids":["https://openalex.org/I4210123907","https://openalex.org/I139264467"]},{"raw_affiliation_string":"Department of Chemistry; Seoul National University; Seoul Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011280743","display_name":"Hahnbeom Park","orcid":"https://orcid.org/0000-0002-7129-1912"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hahnbeom Park","raw_affiliation_strings":["Department of Chemistry, Seoul National University, Seoul, 151-747, Republic of Korea","Department of Chemistry; Seoul National University; Seoul Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Seoul National University, Seoul, 151-747, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Department of Chemistry; Seoul National University; Seoul Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003116915","display_name":"Chaok Seok","orcid":"https://orcid.org/0000-0002-1419-9888"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Chaok Seok","raw_affiliation_strings":["Department of Chemistry, Seoul National University, Seoul, 151-747, Republic of Korea","Department of Chemistry; Seoul National University; Seoul Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Seoul National University, Seoul, 151-747, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Department of Chemistry; Seoul National University; Seoul Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5105988820"],"corresponding_institution_ids":["https://openalex.org/I139264467","https://openalex.org/I4210123907"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":6.392,"has_fulltext":true,"cited_by_count":112,"citation_normalized_percentile":{"value":0.96702045,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"13","issue":"1","first_page":"198","last_page":"198"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11450","display_name":"Model-Driven Software Engineering Techniques","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/1712","display_name":"Software"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12698","display_name":"3D Modeling in Geospatial Applications","score":0.9825999736785889,"subfield":{"id":"https://openalex.org/subfields/2215","display_name":"Building and Construction"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/refining","display_name":"Refining (metallurgy)","score":0.7352283596992493},{"id":"https://openalex.org/keywords/core","display_name":"Core (optical fiber)","score":0.5801762342453003},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5725045204162598},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4209396243095398},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32351431250572205},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15438807010650635},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.08243927359580994},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.062349945306777954},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.05934619903564453}],"concepts":[{"id":"https://openalex.org/C60044698","wikidata":"https://www.wikidata.org/wiki/Q1283324","display_name":"Refining (metallurgy)","level":2,"score":0.7352283596992493},{"id":"https://openalex.org/C2164484","wikidata":"https://www.wikidata.org/wiki/Q5170150","display_name":"Core (optical fiber)","level":2,"score":0.5801762342453003},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5725045204162598},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4209396243095398},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32351431250572205},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15438807010650635},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.08243927359580994},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.062349945306777954},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.05934619903564453},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C191897082","wikidata":"https://www.wikidata.org/wiki/Q11467","display_name":"Metallurgy","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-13-198","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-198","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-198","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22883815","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22883815","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:c978a8d7fe7b4804a84af7bbb59b9491","is_oa":true,"landing_page_url":"https://doaj.org/article/c978a8d7fe7b4804a84af7bbb59b9491","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss 1, p 198 (2012)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3462707","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3462707","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-198","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-198","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-198","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322348","display_name":"Korea Science and Engineering Foundation","ror":"https://ror.org/013aysd81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2024106347.pdf","grobid_xml":"https://content.openalex.org/works/W2024106347.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1578951231","https://openalex.org/W1970984671","https://openalex.org/W1972026510","https://openalex.org/W1980120676","https://openalex.org/W1989777815","https://openalex.org/W2027408247","https://openalex.org/W2028368848","https://openalex.org/W2046919819","https://openalex.org/W2051434435","https://openalex.org/W2065283382","https://openalex.org/W2073895233","https://openalex.org/W2087016464","https://openalex.org/W2100856169","https://openalex.org/W2102245393","https://openalex.org/W2106619251","https://openalex.org/W2107253825","https://openalex.org/W2110252279","https://openalex.org/W2110397834","https://openalex.org/W2110483430","https://openalex.org/W2114520383","https://openalex.org/W2115213105","https://openalex.org/W2115540209","https://openalex.org/W2116744113","https://openalex.org/W2121201922","https://openalex.org/W2125677968","https://openalex.org/W2130060890","https://openalex.org/W2137259644","https://openalex.org/W2137604324","https://openalex.org/W2138699848","https://openalex.org/W2145268834","https://openalex.org/W2146084306","https://openalex.org/W2147770194","https://openalex.org/W2149007706","https://openalex.org/W2155201844","https://openalex.org/W2158714788","https://openalex.org/W2159155807","https://openalex.org/W4241935390"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W1595345252","https://openalex.org/W2392526918","https://openalex.org/W2362540361","https://openalex.org/W2019560916","https://openalex.org/W2361983698","https://openalex.org/W2347697528","https://openalex.org/W2354123794"],"abstract_inverted_index":{"Application":[0],"of":[1,16,24],"GalaxyTBM":[2],"to":[3],"CASP9":[4],"targets":[5],"demonstrates":[6],"that":[7],"accurate":[8],"protein":[9],"structure":[10],"prediction":[11],"is":[12],"possible":[13],"by":[14],"use":[15],"a":[17],"multiple-template-based":[18],"approach,":[19],"and":[20],"ab":[21],"initio":[22],"modeling":[23],"variable":[25],"regions":[26],"can":[27],"further":[28],"enhance":[29],"the":[30],"model":[31],"quality.":[32]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":24},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":4}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
