{"id":"https://openalex.org/W2118564335","doi":"https://doi.org/10.1186/1471-2105-13-166","title":"Slim-Filter: an interactive windows-based application for illumina genome analyzer data assessment and manipulation","display_name":"Slim-Filter: an interactive windows-based application for illumina genome analyzer data assessment and manipulation","publication_year":2012,"publication_date":"2012-07-16","ids":{"openalex":"https://openalex.org/W2118564335","doi":"https://doi.org/10.1186/1471-2105-13-166","mag":"2118564335","pmid":"https://pubmed.ncbi.nlm.nih.gov/22800377"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-166","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-166","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-166","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-166","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001022644","display_name":"George Golovko","orcid":"https://orcid.org/0000-0003-4609-2767"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Georgiy Golovko","raw_affiliation_strings":["Center for BioMedical and Environmental Genomics, University of Houston, Houston, TX, USA. ggolovko@bioinfo.uh.edu","Center for BioMedical and Environmental Genomics, University of Houston, Houston, USA","Department of Computer Science, University of Houston, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for BioMedical and Environmental Genomics, University of Houston, Houston, TX, USA. ggolovko@bioinfo.uh.edu","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Center for BioMedical and Environmental Genomics, University of Houston, Houston, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Department of Computer Science, University of Houston, Houston, USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035061071","display_name":"Kamil Khanipov","orcid":"https://orcid.org/0000-0002-3881-737X"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kamil Khanipov","raw_affiliation_strings":["Center for BioMedical and Environmental Genomics, University of Houston, Houston, TX, USA","Center for BioMedical and Environmental Genomics, University of Houston, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for BioMedical and Environmental Genomics, University of Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Center for BioMedical and Environmental Genomics, University of Houston, Houston, USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111167062","display_name":"Mark Rojas","orcid":null},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Rojas","raw_affiliation_strings":["Center for BioMedical and Environmental Genomics, University of Houston, Houston, TX, USA","Department of Computer Science, University of Houston, Houston, TX, 77204, USA","Center for BioMedical and Environmental Genomics, University of Houston, Houston, USA","Department of Computer Science, University of Houston, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for BioMedical and Environmental Genomics, University of Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Department of Computer Science, University of Houston, Houston, TX, 77204, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Center for BioMedical and Environmental Genomics, University of Houston, Houston, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Department of Computer Science, University of Houston, Houston, USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083180676","display_name":"Antonio Martinez-Alc\u00e1ntara","orcid":null},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Antonio Martinez-Alc\u00e1ntara","raw_affiliation_strings":["Center for BioMedical and Environmental Genomics, University of Houston, Houston, TX, USA","Center for BioMedical and Environmental Genomics, University of Houston, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for BioMedical and Environmental Genomics, University of Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Center for BioMedical and Environmental Genomics, University of Houston, Houston, USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060056835","display_name":"Jesse J. Howard","orcid":null},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jesse J Howard","raw_affiliation_strings":["Center for BioMedical and Environmental Genomics, University of Houston, Houston, TX, USA","Center for BioMedical and Environmental Genomics, University of Houston, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for BioMedical and Environmental Genomics, University of Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Center for BioMedical and Environmental Genomics, University of Houston, Houston, USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011141778","display_name":"Efren Ballesteros","orcid":null},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Efren Ballesteros","raw_affiliation_strings":["Center for BioMedical and Environmental Genomics, University of Houston, Houston, TX, USA","Center for BioMedical and Environmental Genomics, University of Houston, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for BioMedical and Environmental Genomics, University of Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Center for BioMedical and Environmental Genomics, University of Houston, Houston, USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066103911","display_name":"Sharu Gupta","orcid":null},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sharu Gupta","raw_affiliation_strings":["Center for BioMedical and Environmental Genomics, University of Houston, Houston, TX, USA","Center for BioMedical and Environmental Genomics, University of Houston, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for BioMedical and Environmental Genomics, University of Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Center for BioMedical and Environmental Genomics, University of Houston, Houston, USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081632817","display_name":"William R. Widger","orcid":null},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William Widger","raw_affiliation_strings":["Center for BioMedical and Environmental Genomics, University of Houston, Houston, TX, USA","Department of Biology and Biochemistry, University of Houston, Houston, TX, 77204, USA","Center for BioMedical and Environmental Genomics, University of Houston, Houston, USA","Department of Biology and Biochemistry, University of Houston, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for BioMedical and Environmental Genomics, University of Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Department of Biology and Biochemistry, University of Houston, Houston, TX, 77204, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Center for BioMedical and Environmental Genomics, University of Houston, Houston, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Department of Biology and Biochemistry, University of Houston, Houston, USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027121994","display_name":"Yuriy Fofanov","orcid":"https://orcid.org/0000-0003-4240-4313"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuriy Fofanov","raw_affiliation_strings":["Center for BioMedical and Environmental Genomics, University of Houston, Houston, TX, USA","Department of Biology and Biochemistry, University of Houston, Houston, TX, 77204, USA","Department of Computer Science, University of Houston, Houston, TX, 77204, USA","Center for BioMedical and Environmental Genomics, University of Houston, Houston, USA","Department of Biology and Biochemistry, University of Houston, Houston, USA","Department of Computer Science, University of Houston, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for BioMedical and Environmental Genomics, University of Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Department of Biology and Biochemistry, University of Houston, Houston, TX, 77204, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Department of Computer Science, University of Houston, Houston, TX, 77204, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Center for BioMedical and Environmental Genomics, University of Houston, Houston, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Department of Biology and Biochemistry, University of Houston, Houston, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Department of Computer Science, University of Houston, Houston, USA","institution_ids":["https://openalex.org/I44461941"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5001022644"],"corresponding_institution_ids":["https://openalex.org/I44461941"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.8595,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.71860142,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"13","issue":"1","first_page":"166","last_page":"166"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8313000202178955,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8313000202178955,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.025299999862909317,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.016899999231100082,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7479008436203003},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.6233155131340027},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.49786829948425293},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.4242393672466278},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.41425076127052307},{"id":"https://openalex.org/keywords/sorting","display_name":"Sorting","score":0.41390255093574524},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.4131064713001251},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.3583611845970154},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3325442671775818},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2261132299900055},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14829778671264648},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.13864243030548096},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11191493272781372}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7479008436203003},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.6233155131340027},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.49786829948425293},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4242393672466278},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.41425076127052307},{"id":"https://openalex.org/C111696304","wikidata":"https://www.wikidata.org/wiki/Q2303697","display_name":"Sorting","level":2,"score":0.41390255093574524},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.4131064713001251},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.3583611845970154},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3325442671775818},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2261132299900055},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14829778671264648},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.13864243030548096},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11191493272781372},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-13-166","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-166","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-166","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22800377","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22800377","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:8782c7ce560e4108b58d7036466b9b42","is_oa":false,"landing_page_url":"https://doaj.org/article/8782c7ce560e4108b58d7036466b9b42","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss 1, p 166 (2012)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3505481","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3505481","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-166","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-166","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-166","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2640905883","display_name":null,"funder_award_id":"T15LM007093","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320306110","display_name":"U.S. Department of Homeland Security","ror":"https://ror.org/00jyr0d86"},{"id":"https://openalex.org/F4320332664","display_name":"Science and Technology Directorate","ror":"https://ror.org/00jyr0d86"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2118564335.pdf","grobid_xml":"https://content.openalex.org/works/W2118564335.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1971356995","https://openalex.org/W2059529172","https://openalex.org/W2079135015","https://openalex.org/W2097821349","https://openalex.org/W2098131178","https://openalex.org/W2100867243","https://openalex.org/W2111589020","https://openalex.org/W2119923823","https://openalex.org/W2121016876","https://openalex.org/W2152246890"],"related_works":["https://openalex.org/W1966652536","https://openalex.org/W2898567998","https://openalex.org/W2840634956","https://openalex.org/W2110598401","https://openalex.org/W2491987057","https://openalex.org/W2950931723","https://openalex.org/W2566436150","https://openalex.org/W2099270845","https://openalex.org/W2061338306","https://openalex.org/W1820578102"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,245],"emergence":[2],"of":[3,18,27,92,106,112,120,128,170,180,186,202,255],"Next":[4],"Generation":[5],"Sequencing":[6],"technologies":[7],"has":[8,193,249],"made":[9],"it":[10],"possible":[11],"for":[12,164,197,235],"individual":[13,257],"investigators":[14,258],"to":[15,33,49,86,101,199],"generate":[16],"gigabases":[17],"sequencing":[19,93,138,261],"data":[20,29,43,107,155,190,204],"per":[21],"week.":[22],"Effective":[23],"analysis":[24,205],"and":[25,45,63,100,115,130,137,157,167,212,218,229,265],"manipulation":[26,108,191,266],"these":[28],"is":[30,175,208,213],"limited":[31],"due":[32],"large":[34],"file":[35,221],"sizes,":[36],"so":[37],"even":[38],"simple":[39],"tasks":[40,109],"such":[41,69],"as":[42,126,177],"filtration":[44,111,119],"quality":[46,114],"assessment":[47],"have":[48],"be":[50],"performed":[51,73],"in":[52,152,210,224],"several":[53],"steps.":[54],"This":[55],"requires":[56],"(potentially":[57],"problematic)":[58],"interaction":[59],"between":[60],"the":[61,89,135,171,183,187,203,238,253],"investigator":[62],"a":[64,81,103,153,178,230],"bioinformatics/computational":[65],"service":[66],"provider.":[67],"Furthermore,":[68],"services":[70],"are":[71,233],"often":[72],"using":[74],"specialized":[75,154,219],"computational":[76],"facilities.":[77],"RESULTS:":[78],"We":[79],"present":[80],"Windows-based":[82,247],"application,":[83],"Slim-Filter":[84,174,207],"designed":[85],"interactively":[87],"examine":[88],"statistical":[90,184],"properties":[91,185],"reads":[94,121,144,159,262],"produced":[95],"by":[96,160],"Illumina":[97],"Genome":[98],"Analyzer":[99],"perform":[102],"broad":[104],"spectrum":[105],"including:":[110],"low":[113,116],"complexity":[117],"reads;":[118],"containing":[122],"undesired":[123],"subsequences":[124],"(such":[125],"parts":[127],"adapters":[129],"PCR":[131],"primers":[132],"used":[133],"during":[134],"sample":[136],"libraries":[139],"preparation":[140],"steps);":[141],"excluding":[142],"duplicated":[143],"(while":[145],"keeping":[146],"each":[147],"read's":[148],"copy":[149,161],"number":[150],"information":[151],"format);":[156],"sorting":[158],"numbers":[162],"allowing":[163,196],"easy":[165],"access":[166],"manual":[168,232],"editing":[169],"resulting":[172],"files.":[173],"organized":[176],"sequence":[179],"windows":[181],"summarizing":[182],"reads.":[188],"Each":[189],"step":[192],"roll-back":[194],"abilities,":[195],"return":[198],"previous":[200],"steps":[201],"process.":[206],"written":[209],"C++":[211],"compatible":[214],"with":[215,252,259],"fasta,":[216],"fastq,":[217],"AS":[220],"formats":[222],"presented":[223,246],"this":[225],"manuscript.":[226],"Setup":[227],"files":[228],"user's":[231],"available":[234],"download":[236],"at":[237],"supplementary":[239],"web":[240],"site":[241],"(":[242],"https://www.bioinfo.uh.edu/Slim_Filter/).":[243],"CONCLUSION:":[244],"application":[248],"been":[250],"developed":[251],"goal":[254],"providing":[256],"integrated":[260],"analysis,":[263],"curation,":[264],"capabilities.":[267]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
