{"id":"https://openalex.org/W2102702018","doi":"https://doi.org/10.1186/1471-2105-13-122","title":"Web tools for large-scale 3D biological images and atlases","display_name":"Web tools for large-scale 3D biological images and atlases","publication_year":2012,"publication_date":"2012-06-07","ids":{"openalex":"https://openalex.org/W2102702018","doi":"https://doi.org/10.1186/1471-2105-13-122","mag":"2102702018","pmid":"https://pubmed.ncbi.nlm.nih.gov/22676296"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-122","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-122","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-122","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-122","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011374212","display_name":"Zsolt L. Husz","orcid":null},"institutions":[{"id":"https://openalex.org/I4210143731","display_name":"BAE Systems (United Kingdom)","ror":"https://ror.org/04p8ejq70","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210143731"]},{"id":"https://openalex.org/I4210158898","display_name":"Institute of Genetics and Cancer","ror":"https://ror.org/05hygey35","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210158898","https://openalex.org/I90344618","https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Zsolt L Husz","raw_affiliation_strings":["MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, UK","BAE Syst. Adv. Technol. Centre, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, UK","institution_ids":["https://openalex.org/I4210158898"]},{"raw_affiliation_string":"BAE Syst. Adv. Technol. Centre, UK","institution_ids":["https://openalex.org/I4210143731"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Nicholas Burton","orcid":null},"institutions":[{"id":"https://openalex.org/I2800150677","display_name":"Western General Hospital","ror":"https://ror.org/009kr6r15","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1324252669","https://openalex.org/I2800150677"]},{"id":"https://openalex.org/I4210158898","display_name":"Institute of Genetics and Cancer","ror":"https://ror.org/05hygey35","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210158898","https://openalex.org/I90344618","https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicholas Burton","raw_affiliation_strings":["MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, UK","MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, UK","institution_ids":["https://openalex.org/I4210158898"]},{"raw_affiliation_string":"MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, UK","institution_ids":["https://openalex.org/I4210158898","https://openalex.org/I2800150677"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074966091","display_name":"Bill Hill","orcid":"https://orcid.org/0000-0002-8988-0627"},"institutions":[{"id":"https://openalex.org/I2800150677","display_name":"Western General Hospital","ror":"https://ror.org/009kr6r15","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1324252669","https://openalex.org/I2800150677"]},{"id":"https://openalex.org/I4210158898","display_name":"Institute of Genetics and Cancer","ror":"https://ror.org/05hygey35","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210158898","https://openalex.org/I90344618","https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Bill Hill","raw_affiliation_strings":["MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, UK","MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, UK","institution_ids":["https://openalex.org/I4210158898"]},{"raw_affiliation_string":"MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, UK","institution_ids":["https://openalex.org/I4210158898","https://openalex.org/I2800150677"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016369227","display_name":"Nestor Milyaev","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nestor Milyaev","raw_affiliation_strings":["Informatics, Edinburgh University, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics, Edinburgh University, UK","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057893272","display_name":"Richard Baldock","orcid":"https://orcid.org/0000-0003-0332-6877"},"institutions":[{"id":"https://openalex.org/I2800150677","display_name":"Western General Hospital","ror":"https://ror.org/009kr6r15","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1324252669","https://openalex.org/I2800150677"]},{"id":"https://openalex.org/I4210158898","display_name":"Institute of Genetics and Cancer","ror":"https://ror.org/05hygey35","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210158898","https://openalex.org/I90344618","https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Richard A Baldock","raw_affiliation_strings":["MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, UK","MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, UK","institution_ids":["https://openalex.org/I4210158898"]},{"raw_affiliation_string":"MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, UK","institution_ids":["https://openalex.org/I4210158898","https://openalex.org/I2800150677"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":4.4814,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.95068654,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"13","issue":"1","first_page":"122","last_page":"122"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.3693000078201294,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.3693000078201294,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10481","display_name":"Computer Graphics and Visualization Techniques","score":0.21070000529289246,"subfield":{"id":"https://openalex.org/subfields/1704","display_name":"Computer Graphics and Computer-Aided Design"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.06499999761581421,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8427010774612427},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.6278738975524902},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.5629713535308838},{"id":"https://openalex.org/keywords/hypertext-transfer-protocol","display_name":"Hypertext Transfer Protocol","score":0.546773374080658},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.46186524629592896},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.45428749918937683},{"id":"https://openalex.org/keywords/protocol","display_name":"Protocol (science)","score":0.4498363137245178},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4161268472671509},{"id":"https://openalex.org/keywords/ajax","display_name":"Ajax","score":0.415014386177063},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.41417834162712097},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.32330018281936646},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.24018287658691406},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23251327872276306},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.16027310490608215}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8427010774612427},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.6278738975524902},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.5629713535308838},{"id":"https://openalex.org/C149672775","wikidata":"https://www.wikidata.org/wiki/Q8777","display_name":"Hypertext Transfer Protocol","level":3,"score":0.546773374080658},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.46186524629592896},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.45428749918937683},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.4498363137245178},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4161268472671509},{"id":"https://openalex.org/C504723692","wikidata":"https://www.wikidata.org/wiki/Q134471","display_name":"Ajax","level":3,"score":0.415014386177063},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.41417834162712097},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.32330018281936646},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.24018287658691406},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23251327872276306},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.16027310490608215},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-13-122","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-122","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-122","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22676296","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22676296","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pure.ed.ac.uk:openaire/323479da-fa94-46a1-8e04-6207cf848262","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/323479da-fa94-46a1-8e04-6207cf848262","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Husz, Z L, Burton, N, Hill, B, Milyaev, N & Baldock, R A 2012, 'Web tools for large-scale 3D biological images and atlases', BMC Bioinformatics, vol. 13, ARTN 122. https://doi.org/10.1186/1471-2105-13-122","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:c5fc6af7647242f79bb4448cb84759e9","is_oa":true,"landing_page_url":"https://doaj.org/article/c5fc6af7647242f79bb4448cb84759e9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss 1, p 122 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2418361","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3412715","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.ed.ac.uk:publications/323479da-fa94-46a1-8e04-6207cf848262","is_oa":true,"landing_page_url":"http://www.biomedcentral.com/1471-2105/13/122","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-122","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-122","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-122","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1252325381","display_name":null,"funder_award_id":"BB/G000883/2","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5522922097","display_name":null,"funder_award_id":"BB/G000883/2","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8226764972","display_name":null,"funder_award_id":"1R01MH070370-01A2","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"}],"funders":[{"id":"https://openalex.org/F4320320295","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2102702018.pdf","grobid_xml":"https://content.openalex.org/works/W2102702018.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W87124356","https://openalex.org/W574078859","https://openalex.org/W1524554374","https://openalex.org/W1550287776","https://openalex.org/W1552632109","https://openalex.org/W1575504122","https://openalex.org/W1582171200","https://openalex.org/W1969386166","https://openalex.org/W1976443465","https://openalex.org/W1984634839","https://openalex.org/W2005772539","https://openalex.org/W2014946063","https://openalex.org/W2022235653","https://openalex.org/W2038221848","https://openalex.org/W2038806095","https://openalex.org/W2103346617","https://openalex.org/W2109558362","https://openalex.org/W2118579925","https://openalex.org/W2123722538","https://openalex.org/W2123971620","https://openalex.org/W2137600012","https://openalex.org/W2141776321","https://openalex.org/W2168166653","https://openalex.org/W2294349043","https://openalex.org/W3038698521","https://openalex.org/W4231056502"],"related_works":["https://openalex.org/W2977640261","https://openalex.org/W4205164203","https://openalex.org/W618621609","https://openalex.org/W4256177598","https://openalex.org/W178649013","https://openalex.org/W358842823","https://openalex.org/W2495482800","https://openalex.org/W2485369958","https://openalex.org/W2245225327","https://openalex.org/W591268100"],"abstract_inverted_index":{"BACKGROUND:":[0],"Large-scale":[1],"volumetric":[2],"biomedical":[3,275],"image":[4,104,178,205,235,248,255,276,285],"data":[5,70,82,126,277],"of":[6,36,53,86,124,155,196,215,227,242,253,272],"three":[7],"or":[8,51],"more":[9],"dimensions":[10],"are":[11,190],"a":[12,87,129,145,153,173,270,283],"significant":[13],"challenge":[14],"for":[15,26,64,96,177,282],"distributed":[16],"browsing":[17,214],"and":[18,39,98,106,132,141,152,183,198,210,232,257,274],"visualisation.":[19],"Many":[20],"images":[21,55,74,101,131],"now":[22],"exceed":[23],"10GB":[24],"which":[25],"most":[27],"users":[28,46,76],"is":[29,43,138,222],"too":[30],"large":[31,219,247,262],"to":[32,48,77,119,148,181,246,280],"handle":[33],"in":[34,83,162],"terms":[35],"computer":[37],"RAM":[38],"network":[40],"bandwidth.":[41],"This":[42],"aggravated":[44],"when":[45],"need":[47],"access":[49,245],"tens":[50],"hundreds":[52],"such":[54],"from":[56],"an":[57,93,163,228],"archive.":[58],"Here":[59],"we":[60,142],"solve":[61],"the":[62,84,150,169,240,251],"problem":[63],"2D":[65,122],"section":[66,188],"views":[67,189,206],"through":[68,79,218],"archive":[69],"delivering":[71],"compressed":[72],"tiled":[73],"enabling":[75,243],"browse":[78],"very-large":[80],"volume":[81],"context":[85],"standard":[88,111],"web-browser.":[89],"The":[90,110,135,187,200,237,265],"system":[91,266],"provides":[92],"interactive":[94],"visualisation":[95],"grey-level":[97],"colour":[99],"3D":[100,125],"including":[102],"multiple":[103],"layers":[105],"spatial-data":[107],"overlay.":[108],"RESULTS:":[109],"Internet":[112,164],"Imaging":[113],"Protocol":[114],"(IIP)":[115],"has":[116],"been":[117],"extended":[118,136,229],"enable":[120],"arbitrary":[121,216],"sectioning":[123],"as":[127],"well":[128],"multi-layered":[130],"indexed":[133],"overlays.":[134,211],"protocol":[137,151,231],"termed":[139],"IIP3D":[140],"have":[143,167],"implemented":[144],"matching":[146],"server":[147,170,176],"deliver":[149],"series":[154],"Ajax/Javascript":[156],"client":[157,202,258],"codes":[158],"that":[159],"will":[160],"run":[161],"browser.":[165],"We":[166],"tested":[168],"software":[171],"on":[172],"low-cost":[174],"linux-based":[175],"volumes":[179,221],"up":[180,279],"135GB":[182,281],"64":[184],"simultaneous":[185],"users.":[186],"delivered":[191],"with":[192,207,260],"response":[193],"times":[194],"independent":[195],"scale":[197],"orientation.":[199],"exemplar":[201],"provided":[203],"multi-layer":[204],"user-controlled":[208],"colour-filtering":[209],"CONCLUSIONS:":[212],"Interactive":[213],"sections":[217],"biomedical-image":[220],"made":[223],"possible":[224],"by":[225],"use":[226],"internet":[230],"efficient":[233],"server-based":[234],"tiling.":[236],"tools":[238],"open":[239],"possibility":[241],"fast":[244],"archives":[249],"without":[250],"requirement":[252],"whole":[254],"download":[256],"computers":[259],"very":[261],"memory":[263],"configurations.":[264],"was":[267],"demonstrated":[268],"using":[269],"range":[271],"medical":[273],"extending":[278],"single":[284],"volume.":[286]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-13T07:31:44.756512","created_date":"2025-10-10T00:00:00"}
