{"id":"https://openalex.org/W2148663653","doi":"https://doi.org/10.1186/1471-2105-13-113","title":"Molecular ecological network analyses","display_name":"Molecular ecological network analyses","publication_year":2012,"publication_date":"2012-05-30","ids":{"openalex":"https://openalex.org/W2148663653","doi":"https://doi.org/10.1186/1471-2105-13-113","mag":"2148663653","pmid":"https://pubmed.ncbi.nlm.nih.gov/22646978"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-113","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-113","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-113","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-113","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112506304","display_name":"Ye Deng","orcid":"https://orcid.org/0009-0008-0450-3971"},"institutions":[{"id":"https://openalex.org/I8692664","display_name":"University of Oklahoma","ror":"https://ror.org/02aqsxs83","country_code":"US","type":"education","lineage":["https://openalex.org/I8692664"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ye Deng","raw_affiliation_strings":["Institute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, OK 73019, USA","Institute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, OK, 73019, USA"],"affiliations":[{"raw_affiliation_string":"Institute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, OK 73019, USA","institution_ids":["https://openalex.org/I8692664"]},{"raw_affiliation_string":"Institute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, OK, 73019, USA","institution_ids":["https://openalex.org/I8692664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108527660","display_name":"Yi\u2010Huei Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I8692664","display_name":"University of Oklahoma","ror":"https://ror.org/02aqsxs83","country_code":"US","type":"education","lineage":["https://openalex.org/I8692664"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yi-Huei Jiang","raw_affiliation_strings":["Institute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman OK 73019, USA","Institute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, OK, 73019, USA"],"affiliations":[{"raw_affiliation_string":"Institute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman OK 73019, USA","institution_ids":["https://openalex.org/I8692664"]},{"raw_affiliation_string":"Institute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, OK, 73019, USA","institution_ids":["https://openalex.org/I8692664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035440650","display_name":"Yunfeng Yang","orcid":"https://orcid.org/0000-0001-8274-6196"},"institutions":[{"id":"https://openalex.org/I4210128533","display_name":"State Key Joint Laboratory of Environment Simulation and Pollution Control","ror":"https://ror.org/03ckpzr37","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210128533"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yunfeng Yang","raw_affiliation_strings":["State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China","State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China"],"affiliations":[{"raw_affiliation_string":"State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I4210128533","https://openalex.org/I99065089"]},{"raw_affiliation_string":"State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China","institution_ids":["https://openalex.org/I4210128533","https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061973931","display_name":"Zhili He","orcid":"https://orcid.org/0000-0001-8225-7333"},"institutions":[{"id":"https://openalex.org/I8692664","display_name":"University of Oklahoma","ror":"https://ror.org/02aqsxs83","country_code":"US","type":"education","lineage":["https://openalex.org/I8692664"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhili He","raw_affiliation_strings":["Institute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman OK 73019, USA","Institute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, OK, 73019, USA"],"affiliations":[{"raw_affiliation_string":"Institute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman OK 73019, USA","institution_ids":["https://openalex.org/I8692664"]},{"raw_affiliation_string":"Institute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, OK, 73019, USA","institution_ids":["https://openalex.org/I8692664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100683466","display_name":"Feng Luo","orcid":"https://orcid.org/0000-0002-4813-2403"},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Feng Luo","raw_affiliation_strings":["School of Computing, Clemson University, Clemson, SC, 29634, USA"],"affiliations":[{"raw_affiliation_string":"School of Computing, Clemson University, Clemson, SC, 29634, USA","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011788533","display_name":"Jizhong Zhou","orcid":"https://orcid.org/0000-0003-2014-0564"},"institutions":[{"id":"https://openalex.org/I8692664","display_name":"University of Oklahoma","ror":"https://ror.org/02aqsxs83","country_code":"US","type":"education","lineage":["https://openalex.org/I8692664"]},{"id":"https://openalex.org/I4210128533","display_name":"State Key Joint Laboratory of Environment Simulation and Pollution Control","ror":"https://ror.org/03ckpzr37","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210128533"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jizhong Zhou","raw_affiliation_strings":["Institute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman OK 73019, USA","State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China","State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China"],"affiliations":[{"raw_affiliation_string":"Institute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman OK 73019, USA","institution_ids":["https://openalex.org/I8692664"]},{"raw_affiliation_string":"State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I4210128533","https://openalex.org/I99065089"]},{"raw_affiliation_string":"State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China","institution_ids":["https://openalex.org/I4210128533","https://openalex.org/I99065089"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5112506304"],"corresponding_institution_ids":["https://openalex.org/I8692664"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":10.6341,"has_fulltext":true,"cited_by_count":3131,"citation_normalized_percentile":{"value":0.98756105,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"13","issue":"1","first_page":"113","last_page":"113"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9675999879837036,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9434000253677368,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.618150532245636},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5908543467521667},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5274826884269714},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.42023128271102905},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.4168369770050049},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3535260558128357},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3251209855079651},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2766638398170471},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2579052448272705},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.12748193740844727}],"concepts":[{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.618150532245636},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5908543467521667},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5274826884269714},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.42023128271102905},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.4168369770050049},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3535260558128357},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3251209855079651},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2766638398170471},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2579052448272705},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.12748193740844727}],"mesh":[{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012987","descriptor_name":"Soil","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012987","descriptor_name":"Soil","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012987","descriptor_name":"Soil","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012987","descriptor_name":"Soil","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012988","descriptor_name":"Soil Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012988","descriptor_name":"Soil Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012988","descriptor_name":"Soil Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012988","descriptor_name":"Soil Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013696","descriptor_name":"Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013696","descriptor_name":"Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013696","descriptor_name":"Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013696","descriptor_name":"Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-13-113","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-113","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-113","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22646978","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22646978","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:osti.gov:1626287","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1626287","pdf_url":"https://www.osti.gov/servlets/purl/1626287","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:c4ae2f9a4779406386768e81bfe7666e","is_oa":true,"landing_page_url":"https://doaj.org/article/c4ae2f9a4779406386768e81bfe7666e","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss 1, p 113 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2429499","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3428680","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-113","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-113","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-113","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.7599999904632568,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G1117004060","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1337544421","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G2795017735","display_name":null,"funder_award_id":"2007-35319-18305","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3944918260","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G425189044","display_name":null,"funder_award_id":"DE-AC02-05CH","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4565140552","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4841871747","display_name":null,"funder_award_id":"DE_AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5257722410","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G5315912995","display_name":null,"funder_award_id":"11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5802748842","display_name":null,"funder_award_id":"DE-AC02-05CH112","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G6330738325","display_name":null,"funder_award_id":"DE_AC02_05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6348972864","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6429026066","display_name":null,"funder_award_id":"DE-AC02-05CH112","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6735079964","display_name":null,"funder_award_id":"DE-SC0004601","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7233692708","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7340683655","display_name":null,"funder_award_id":"E-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7406122311","display_name":null,"funder_award_id":"AC02-05CH1123","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7629237052","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G7664691372","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7787287669","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G7825954517","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8413608756","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G8414908677","display_name":null,"funder_award_id":"DE-AC0","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8439989833","display_name":null,"funder_award_id":"DE-SC0004601","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G897164627","display_name":null,"funder_award_id":"DE-AC02_05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320322392","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337509","display_name":"Biological and Environmental Research","ror":"https://ror.org/0114b2m14"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2148663653.pdf","grobid_xml":"https://content.openalex.org/works/W2148663653.grobid-xml"},"referenced_works_count":106,"referenced_works":["https://openalex.org/W114487202","https://openalex.org/W165789894","https://openalex.org/W181436911","https://openalex.org/W276233706","https://openalex.org/W950821216","https://openalex.org/W1479863711","https://openalex.org/W1481919380","https://openalex.org/W1874853784","https://openalex.org/W1932560099","https://openalex.org/W1964305071","https://openalex.org/W1966327575","https://openalex.org/W1967821667","https://openalex.org/W1968439746","https://openalex.org/W1971421925","https://openalex.org/W1972106549","https://openalex.org/W1982895329","https://openalex.org/W1986606765","https://openalex.org/W1986689611","https://openalex.org/W1989119979","https://openalex.org/W1990435776","https://openalex.org/W1992452843","https://openalex.org/W1995213405","https://openalex.org/W2000567731","https://openalex.org/W2001414066","https://openalex.org/W2007471837","https://openalex.org/W2008620264","https://openalex.org/W2008788144","https://openalex.org/W2015953751","https://openalex.org/W2017455393","https://openalex.org/W2017987256","https://openalex.org/W2018045523","https://openalex.org/W2018049970","https://openalex.org/W2023799137","https://openalex.org/W2024060531","https://openalex.org/W2024471867","https://openalex.org/W2027688256","https://openalex.org/W2029173860","https://openalex.org/W2030750270","https://openalex.org/W2032230795","https://openalex.org/W2033302224","https://openalex.org/W2035245651","https://openalex.org/W2042591446","https://openalex.org/W2043004358","https://openalex.org/W2047940964","https://openalex.org/W2049094395","https://openalex.org/W2056997619","https://openalex.org/W2060464767","https://openalex.org/W2060705109","https://openalex.org/W2061901927","https://openalex.org/W2067703482","https://openalex.org/W2068229930","https://openalex.org/W2070304262","https://openalex.org/W2076372398","https://openalex.org/W2078149659","https://openalex.org/W2079829409","https://openalex.org/W2081837126","https://openalex.org/W2087194317","https://openalex.org/W2089458547","https://openalex.org/W2090942992","https://openalex.org/W2091901410","https://openalex.org/W2092889288","https://openalex.org/W2094238140","https://openalex.org/W2098509290","https://openalex.org/W2104085672","https://openalex.org/W2112090702","https://openalex.org/W2112348586","https://openalex.org/W2112874908","https://openalex.org/W2113618723","https://openalex.org/W2114859967","https://openalex.org/W2120665364","https://openalex.org/W2121045435","https://openalex.org/W2122184339","https://openalex.org/W2125826054","https://openalex.org/W2132957436","https://openalex.org/W2135282243","https://openalex.org/W2137531873","https://openalex.org/W2138124954","https://openalex.org/W2139448391","https://openalex.org/W2145132040","https://openalex.org/W2145402497","https://openalex.org/W2148541040","https://openalex.org/W2149874521","https://openalex.org/W2151820055","https://openalex.org/W2151936673","https://openalex.org/W2152222194","https://openalex.org/W2156737316","https://openalex.org/W2157082398","https://openalex.org/W2160870047","https://openalex.org/W2160875291","https://openalex.org/W2163056825","https://openalex.org/W2163250554","https://openalex.org/W2163480486","https://openalex.org/W2166106382","https://openalex.org/W2167278498","https://openalex.org/W2167900622","https://openalex.org/W2168322240","https://openalex.org/W2168793216","https://openalex.org/W2296679604","https://openalex.org/W2481508830","https://openalex.org/W2611370172","https://openalex.org/W4211017114","https://openalex.org/W4230871231","https://openalex.org/W4248776151","https://openalex.org/W4251800447","https://openalex.org/W4297440205","https://openalex.org/W4299993032"],"related_works":["https://openalex.org/W2415545834","https://openalex.org/W2069695727","https://openalex.org/W2150084125","https://openalex.org/W2118505788","https://openalex.org/W1802639773","https://openalex.org/W1972196578","https://openalex.org/W1490878237","https://openalex.org/W1542823905","https://openalex.org/W2990314835","https://openalex.org/W4254166511"],"abstract_inverted_index":{"The":[0],"RMT-based":[1],"molecular":[2],"ecological":[3],"network":[4,11],"analysis":[5],"provides":[6],"powerful":[7],"tools":[8],"to":[9,19],"elucidate":[10],"interactions":[12],"in":[13,28],"microbial":[14,29],"communities":[15],"and":[16,31],"their":[17],"responses":[18],"environmental":[20,32],"changes,":[21],"which":[22],"are":[23],"fundamentally":[24],"important":[25],"for":[26],"research":[27],"ecology":[30],"microbiology.":[33]},"counts_by_year":[{"year":2026,"cited_by_count":135},{"year":2025,"cited_by_count":489},{"year":2024,"cited_by_count":571},{"year":2023,"cited_by_count":486},{"year":2022,"cited_by_count":437},{"year":2021,"cited_by_count":336},{"year":2020,"cited_by_count":284},{"year":2019,"cited_by_count":150},{"year":2018,"cited_by_count":91},{"year":2017,"cited_by_count":73},{"year":2016,"cited_by_count":40},{"year":2015,"cited_by_count":20},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":8}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
