{"id":"https://openalex.org/W2133855669","doi":"https://doi.org/10.1186/1471-2105-13-110","title":"TreeSnatcher plus: capturing phylogenetic trees from images","display_name":"TreeSnatcher plus: capturing phylogenetic trees from images","publication_year":2012,"publication_date":"2012-05-24","ids":{"openalex":"https://openalex.org/W2133855669","doi":"https://doi.org/10.1186/1471-2105-13-110","mag":"2133855669","pmid":"https://pubmed.ncbi.nlm.nih.gov/22624611"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-110","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-110","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-110","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-110","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058771307","display_name":"Thomas Laubach","orcid":null},"institutions":[{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Thomas Laubach","raw_affiliation_strings":["Department of Bioinformatics, Heinrich-Heine-University Duesseldorf, Universitaetsstrasse 1, Duesseldorf 40225, Germany. laubach@cs.uni-duesseldorf.de","Department of Bioinformatics, Heinrich-Heine-University Duesseldorf, Duesseldorf, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Heinrich-Heine-University Duesseldorf, Universitaetsstrasse 1, Duesseldorf 40225, Germany. laubach@cs.uni-duesseldorf.de","institution_ids":["https://openalex.org/I44260953"]},{"raw_affiliation_string":"Department of Bioinformatics, Heinrich-Heine-University Duesseldorf, Duesseldorf, Germany","institution_ids":["https://openalex.org/I44260953"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085983122","display_name":"Arndt von Haeseler","orcid":"https://orcid.org/0000-0002-3366-4458"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]},{"id":"https://openalex.org/I2802916955","display_name":"Max Perutz Labs","ror":"https://ror.org/05cz70a34","country_code":"AT","type":"facility","lineage":["https://openalex.org/I2802916955"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Arndt von Haeseler","raw_affiliation_strings":["Center for Integrative Bioinformatics Vienna, Max F Perutz Laboratories, Dr-Bohr-Gasse 9, Vienna, Austria","Medical University Vienna, Vienna, Austria","University of Vienna, Vienna, Austria","Center for Integrative Bioinformatics Vienna, Max F Perutz Laboratories, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"Center for Integrative Bioinformatics Vienna, Max F Perutz Laboratories, Dr-Bohr-Gasse 9, Vienna, Austria","institution_ids":["https://openalex.org/I2802916955"]},{"raw_affiliation_string":"Medical University Vienna, Vienna, Austria","institution_ids":["https://openalex.org/I76134821"]},{"raw_affiliation_string":"University of Vienna, Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"Center for Integrative Bioinformatics Vienna, Max F Perutz Laboratories, Vienna, Austria","institution_ids":["https://openalex.org/I2802916955"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075006239","display_name":"Martin J. Lercher","orcid":"https://orcid.org/0000-0003-3940-1621"},"institutions":[{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin J Lercher","raw_affiliation_strings":["Department of Bioinformatics, Heinrich-Heine-University Duesseldorf, Universitaetsstrasse 1, Duesseldorf, 40225, Germany","Department of Bioinformatics, Heinrich-Heine-University Duesseldorf, Duesseldorf, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Heinrich-Heine-University Duesseldorf, Universitaetsstrasse 1, Duesseldorf, 40225, Germany","institution_ids":["https://openalex.org/I44260953"]},{"raw_affiliation_string":"Department of Bioinformatics, Heinrich-Heine-University Duesseldorf, Duesseldorf, Germany","institution_ids":["https://openalex.org/I44260953"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5058771307"],"corresponding_institution_ids":["https://openalex.org/I44260953"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.8789,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.84007801,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"13","issue":"1","first_page":"110","last_page":"110"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.9818000197410583,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7690761685371399},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6987132430076599},{"id":"https://openalex.org/keywords/digitization","display_name":"Digitization","score":0.6823627352714539},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6701853275299072},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.6030707955360413},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5716271996498108},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5331954956054688},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5241682529449463},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5190497040748596},{"id":"https://openalex.org/keywords/pixel","display_name":"Pixel","score":0.4387649893760681},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.4100109338760376},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.40085747838020325},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.3798588216304779},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3254213035106659},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.2705724239349365},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18005752563476562},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1676817238330841},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15259358286857605},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.08123618364334106}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7690761685371399},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6987132430076599},{"id":"https://openalex.org/C2779308522","wikidata":"https://www.wikidata.org/wiki/Q843958","display_name":"Digitization","level":2,"score":0.6823627352714539},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6701853275299072},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.6030707955360413},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5716271996498108},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5331954956054688},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5241682529449463},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5190497040748596},{"id":"https://openalex.org/C160633673","wikidata":"https://www.wikidata.org/wiki/Q355198","display_name":"Pixel","level":2,"score":0.4387649893760681},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.4100109338760376},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.40085747838020325},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.3798588216304779},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3254213035106659},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.2705724239349365},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18005752563476562},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1676817238330841},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15259358286857605},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.08123618364334106},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-13-110","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-110","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-110","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22624611","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22624611","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:info:fedora/oai:univie.ac.at:o:564083","is_oa":true,"landing_page_url":"https://phaidra.univie.ac.at/o:564083","pdf_url":null,"source":{"id":"https://openalex.org/S4306401993","display_name":"Phaidra (Universit\u00e4t Wien)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I129774422","host_organization_name":"University of Vienna","host_organization_lineage":["https://openalex.org/I129774422"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ISSN:1471-2105","raw_type":"article"},{"id":"pmh:oai:doaj.org/article:e7dba23532cc4733988eb655c9dcc0ee","is_oa":true,"landing_page_url":"https://doaj.org/article/e7dba23532cc4733988eb655c9dcc0ee","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss 1, p 110 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2417132","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3411374","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-110","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-110","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-110","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3325066439","display_name":null,"funder_award_id":"SFB 680","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2133855669.pdf","grobid_xml":"https://content.openalex.org/works/W2133855669.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1975957527","https://openalex.org/W2015265189","https://openalex.org/W2039367092","https://openalex.org/W2065939324","https://openalex.org/W2150823368","https://openalex.org/W4205741576"],"related_works":["https://openalex.org/W1539704186","https://openalex.org/W4254109238","https://openalex.org/W2399890175","https://openalex.org/W4308177873","https://openalex.org/W3202479762","https://openalex.org/W2480493049","https://openalex.org/W4322582183","https://openalex.org/W2592115649","https://openalex.org/W1937392525","https://openalex.org/W2347632764"],"abstract_inverted_index":{"Although":[0],"illustrations":[1],"of":[2,9,32,35],"phylogenies":[3],"exist":[4],"in":[5],"a":[6,28,54,61],"vast":[7],"number":[8],"styles,":[10],"TreeSnatcher":[11,43],"Plus":[12,44],"imposes":[13],"no":[14],"limitations":[15],"on":[16],"the":[17,46],"images":[18],"it":[19],"can":[20],"process":[21],"with":[22],"adequate":[23],"user":[24],"assistance.":[25],"Given":[26],"that":[27,49],"fully":[29],"automated":[30],"digitization":[31],"all":[33],"figures":[34,59],"phylogenetic":[36],"trees":[37],"is":[38,45],"desirable":[39],"but":[40],"currently":[41],"unrealistic,":[42],"only":[47],"program":[48],"reliably":[50],"facilitates":[51],"at":[52],"least":[53],"semi-automatic":[55],"conversion":[56],"from":[57],"such":[58],"into":[60],"machine-readable":[62],"format.":[63]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
