{"id":"https://openalex.org/W2011451331","doi":"https://doi.org/10.1186/1471-2105-13-106","title":"Natural product-likeness score revisited: an open-source, open-data implementation","display_name":"Natural product-likeness score revisited: an open-source, open-data implementation","publication_year":2012,"publication_date":"2012-05-20","ids":{"openalex":"https://openalex.org/W2011451331","doi":"https://doi.org/10.1186/1471-2105-13-106","mag":"2011451331","pmid":"https://pubmed.ncbi.nlm.nih.gov/22607271"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-106","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-106","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-106","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-106","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032352668","display_name":"Kalai Vanii Jayaseelan","orcid":"https://orcid.org/0000-0003-1572-0687"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210137637","display_name":"Bioinformatics Institute","ror":"https://ror.org/04btxg914","country_code":"RU","type":"nonprofit","lineage":["https://openalex.org/I4210137637"]}],"countries":["GB","RU"],"is_corresponding":true,"raw_author_name":"Kalai Vanii Jayaseelan","raw_affiliation_strings":["Chemoinformatics and Metabolism, European Bioinformatics Institute (EBI), UK. kalai@ebi.ac.uk","Chemoinformatics and Metabolism, European Bioinformatics Institute (EBI), Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"Chemoinformatics and Metabolism, European Bioinformatics Institute (EBI), UK. kalai@ebi.ac.uk","institution_ids":["https://openalex.org/I4210137637","https://openalex.org/I1303153112"]},{"raw_affiliation_string":"Chemoinformatics and Metabolism, European Bioinformatics Institute (EBI), Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101428806","display_name":"Pablo Moreno","orcid":"https://orcid.org/0000-0002-9856-1679"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Pablo Moreno","raw_affiliation_strings":["Chemoinformatics and Metabolism, European Bioinformatics Institute (EBI), Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"Chemoinformatics and Metabolism, European Bioinformatics Institute (EBI), Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090863551","display_name":"Andreas Truszkowski","orcid":null},"institutions":[{"id":"https://openalex.org/I4210122778","display_name":"University of Applied Sciences for Public Administration and Management","ror":"https://ror.org/02qbcmz19","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210122778"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Truszkowski","raw_affiliation_strings":["Institute for Bioinformatics and Cheminformatics, University of Applied Sciences of Gelsenkirchen, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Bioinformatics and Cheminformatics, University of Applied Sciences of Gelsenkirchen, Germany","institution_ids":["https://openalex.org/I4210122778"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025468315","display_name":"Peter Ertl","orcid":"https://orcid.org/0000-0001-6496-4448"},"institutions":[{"id":"https://openalex.org/I4400600974","display_name":"Novartis Institutes for BioMedical Research","ror":"https://ror.org/053gv2m95","country_code":null,"type":"funder","lineage":["https://openalex.org/I1283582996","https://openalex.org/I4400600974"]},{"id":"https://openalex.org/I1283582996","display_name":"Novartis (Switzerland)","ror":"https://ror.org/02f9zrr09","country_code":"CH","type":"company","lineage":["https://openalex.org/I1283582996"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Peter Ertl","raw_affiliation_strings":["Novartis Institutes for BioMedical Research, CH-4056, Basel, Switzerland","Novartis Institutes for Biomedical Research, Basel,  Switzerland"],"affiliations":[{"raw_affiliation_string":"Novartis Institutes for BioMedical Research, CH-4056, Basel, Switzerland","institution_ids":["https://openalex.org/I1283582996","https://openalex.org/I4400600974"]},{"raw_affiliation_string":"Novartis Institutes for Biomedical Research, Basel,  Switzerland","institution_ids":["https://openalex.org/I1283582996","https://openalex.org/I4400600974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040194803","display_name":"Christoph Steinbeck","orcid":"https://orcid.org/0000-0001-6966-0814"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christoph Steinbeck","raw_affiliation_strings":["Chemoinformatics and Metabolism, European Bioinformatics Institute (EBI), Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"Chemoinformatics and Metabolism, European Bioinformatics Institute (EBI), Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5032352668"],"corresponding_institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I4210137637"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":4.5328,"has_fulltext":true,"cited_by_count":101,"citation_normalized_percentile":{"value":0.94753825,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"13","issue":"1","first_page":"106","last_page":"106"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6964783072471619},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.6308332681655884},{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.5943073034286499},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5281850099563599},{"id":"https://openalex.org/keywords/product","display_name":"Product (mathematics)","score":0.4887204170227051},{"id":"https://openalex.org/keywords/natural-product","display_name":"Natural product","score":0.45965614914894104},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.38337796926498413},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3368445038795471},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.3013841509819031},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20392683148384094},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.16965708136558533},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.12146678566932678},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10584497451782227}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6964783072471619},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.6308332681655884},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.5943073034286499},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5281850099563599},{"id":"https://openalex.org/C90673727","wikidata":"https://www.wikidata.org/wiki/Q901718","display_name":"Product (mathematics)","level":2,"score":0.4887204170227051},{"id":"https://openalex.org/C2779396153","wikidata":"https://www.wikidata.org/wiki/Q901227","display_name":"Natural product","level":2,"score":0.45965614914894104},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.38337796926498413},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3368445038795471},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.3013841509819031},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20392683148384094},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16965708136558533},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.12146678566932678},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10584497451782227},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020650","descriptor_name":"Combinatorial Chemistry Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020650","descriptor_name":"Combinatorial Chemistry Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020650","descriptor_name":"Combinatorial Chemistry Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-13-106","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-106","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-106","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22607271","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22607271","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:2e31c60f4dfd4c3589b2d6b7a55f8c20","is_oa":true,"landing_page_url":"https://doaj.org/article/2e31c60f4dfd4c3589b2d6b7a55f8c20","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss 1, p 106 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2442189","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3436723","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-106","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-106","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-106","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320313288","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2011451331.pdf","grobid_xml":"https://content.openalex.org/works/W2011451331.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1999440281","https://openalex.org/W2053385401","https://openalex.org/W2064963922","https://openalex.org/W2096541451","https://openalex.org/W2098889731","https://openalex.org/W2104950117","https://openalex.org/W2111581388","https://openalex.org/W2137052779","https://openalex.org/W2142328147","https://openalex.org/W2142565532","https://openalex.org/W2148797284","https://openalex.org/W2161104773","https://openalex.org/W2168103533","https://openalex.org/W2169178437","https://openalex.org/W2176516200","https://openalex.org/W2213735563"],"related_works":["https://openalex.org/W4213303036","https://openalex.org/W2005581717","https://openalex.org/W2973074952","https://openalex.org/W2754716184","https://openalex.org/W3192743355","https://openalex.org/W2594328795","https://openalex.org/W4367601179","https://openalex.org/W2584285938","https://openalex.org/W3201311513","https://openalex.org/W4327862425"],"abstract_inverted_index":{"Our":[0],"open-source,":[1],"open-data":[2],"Natural-Product-Likeness":[3],"scoring":[4],"system":[5],"can":[6],"be":[7],"used":[8],"as":[9,30],"a":[10],"filter":[11],"for":[12,27],"metabolites":[13],"in":[14,32],"Computer":[15],"Assisted":[16],"Structure":[17],"Elucidation":[18],"or":[19],"to":[20],"select":[21],"natural-product-like":[22],"molecules":[23],"from":[24],"molecular":[25],"libraries":[26],"the":[28],"use":[29],"leads":[31],"drug":[33],"discovery.":[34]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":24},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-22T08:09:32.410652","created_date":"2025-10-10T00:00:00"}
