{"id":"https://openalex.org/W2144094755","doi":"https://doi.org/10.1186/1471-2105-13-100","title":"Handling the data management needs of high-throughput sequencing data: SpeedGene, a compression algorithm for the efficient storage of genetic data","display_name":"Handling the data management needs of high-throughput sequencing data: SpeedGene, a compression algorithm for the efficient storage of genetic data","publication_year":2012,"publication_date":"2012-05-16","ids":{"openalex":"https://openalex.org/W2144094755","doi":"https://doi.org/10.1186/1471-2105-13-100","mag":"2144094755","pmid":"https://pubmed.ncbi.nlm.nih.gov/22591016"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-100","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-100","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-100","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-100","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029228127","display_name":"Dandi Qiao","orcid":"https://orcid.org/0000-0001-9450-205X"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Dandi Qiao","raw_affiliation_strings":["Department of Biostatistics, Harvard School of Public Health, Boston, Massachusetts, USA. dqiao@hsph.harvard.edu","Department of Biostatistics, Harvard School of Public Health, #N#Boston, #N#USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, Harvard School of Public Health, Boston, Massachusetts, USA. dqiao@hsph.harvard.edu","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Department of Biostatistics, Harvard School of Public Health, #N#Boston, #N#USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044349591","display_name":"Wai\u2010Ki Yip","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wai-Ki Yip","raw_affiliation_strings":["Department of Biostatistics, Harvard School of Public Health, 677 Huntington Avenue, Boston, Massachusetts, USA","Department of Biostatistics, Harvard School of Public Health, #N#Boston, #N#USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, Harvard School of Public Health, 677 Huntington Avenue, Boston, Massachusetts, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Department of Biostatistics, Harvard School of Public Health, #N#Boston, #N#USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002736890","display_name":"Christoph Lange","orcid":"https://orcid.org/0000-0003-2620-1030"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I2801533059","display_name":"German Center for Neurodegenerative Diseases","ror":"https://ror.org/043j0f473","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I2801533059","https://openalex.org/I4405256427"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Christoph Lange","raw_affiliation_strings":["Department of Biostatistics, Harvard School of Public Health, 677 Huntington Avenue, Boston, Massachusetts, USA","German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany","Institute for Genomic Mathematics, University of Bonn, Bonn, Germany","Department of Biostatistics, Harvard School of Public Health, Boston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, Harvard School of Public Health, 677 Huntington Avenue, Boston, Massachusetts, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany","institution_ids":["https://openalex.org/I2801533059"]},{"raw_affiliation_string":"Institute for Genomic Mathematics, University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"Department of Biostatistics, Harvard School of Public Health, Boston, USA","institution_ids":["https://openalex.org/I136199984"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5029228127"],"corresponding_institution_ids":["https://openalex.org/I136199984"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.9145,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.93780063,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"13","issue":"1","first_page":"100","last_page":"100"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.939300000667572,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.939300000667572,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.01510000042617321,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.007000000216066837,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7677810192108154},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.6917652487754822},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5106578469276428},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.4840780794620514},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4705662429332733},{"id":"https://openalex.org/keywords/computer-data-storage","display_name":"Computer data storage","score":0.4518173038959503},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4462835490703583},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4239957332611084},{"id":"https://openalex.org/keywords/computer-engineering","display_name":"Computer engineering","score":0.33548158407211304},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.22508010268211365},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.109945148229599}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7677810192108154},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.6917652487754822},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5106578469276428},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.4840780794620514},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4705662429332733},{"id":"https://openalex.org/C194739806","wikidata":"https://www.wikidata.org/wiki/Q66221","display_name":"Computer data storage","level":2,"score":0.4518173038959503},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4462835490703583},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4239957332611084},{"id":"https://openalex.org/C113775141","wikidata":"https://www.wikidata.org/wiki/Q428691","display_name":"Computer engineering","level":1,"score":0.33548158407211304},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.22508010268211365},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.109945148229599},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-13-100","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-100","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-100","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22591016","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22591016","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:dash.harvard.edu:1/10579071","is_oa":true,"landing_page_url":"http://nrs.harvard.edu/urn-3:HUL.InstRepos:10579071","pdf_url":null,"source":{"id":"https://openalex.org/S4306401540","display_name":"Digital Access to Scholarship at Harvard (DASH) (Harvard University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I136199984","host_organization_name":"Harvard University","host_organization_lineage":["https://openalex.org/I136199984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:636634fd5f104f3da242803b181f8794","is_oa":false,"landing_page_url":"https://doaj.org/article/636634fd5f104f3da242803b181f8794","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss 1, p 100 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2440462","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3434015","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pub.dzne.de:136616","is_oa":true,"landing_page_url":"https://pub.dzne.de/search?p=id:%22DZNE-2020-02938%22","pdf_url":null,"source":{"id":"https://openalex.org/S7407051172","display_name":"DZNE Pub","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC bioinformatics 13(1), 100 (2012). doi:10.1186/1471-2105-13-100","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-100","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-100","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-100","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3429390390","display_name":null,"funder_award_id":"U01HL089856","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G3513783539","display_name":null,"funder_award_id":"R01 MH081862","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G3711824027","display_name":null,"funder_award_id":"U01HL089856","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G4894858943","display_name":null,"funder_award_id":"U01HL089897","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G7324279225","display_name":null,"funder_award_id":"R01MH081862","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G7954440934","display_name":null,"funder_award_id":"R01MH087590","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G8868016466","display_name":null,"funder_award_id":"U01HL089897","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"}],"funders":[{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2144094755.pdf","grobid_xml":"https://content.openalex.org/works/W2144094755.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1605089181","https://openalex.org/W1981132558","https://openalex.org/W2007733142","https://openalex.org/W2020001025","https://openalex.org/W2106470551","https://openalex.org/W2112509895","https://openalex.org/W2118526609","https://openalex.org/W2149992227","https://openalex.org/W2161633633","https://openalex.org/W2171777347","https://openalex.org/W2885727518"],"related_works":["https://openalex.org/W2136583354","https://openalex.org/W2111238207","https://openalex.org/W2760721665","https://openalex.org/W330130819","https://openalex.org/W2288610023","https://openalex.org/W2112044895","https://openalex.org/W3121416282","https://openalex.org/W2281389338","https://openalex.org/W2037453743","https://openalex.org/W2912031806"],"abstract_inverted_index":{"BACKGROUND:":[0],"As":[1],"Next-Generation":[2],"Sequencing":[3],"data":[4,24,97,133,235],"becomes":[5],"available,":[6],"existing":[7],"hardware":[8,238],"environments":[9],"do":[10,76],"not":[11,77],"provide":[12,146],"sufficient":[13,79],"storage":[14,227],"space":[15],"and":[16,21,32,57,92,106,157,176,194,228],"computational":[17],"power":[18],"to":[19,26,126,138,174,213],"store":[20],"process":[22,197],"the":[23,96,117,121,151,161,172,182,189,195,210,226,229],"due":[25],"their":[27],"enormous":[28],"size.":[29],"This":[30],"is":[31,39,98],"will":[33],"be":[34,139,214],"a":[35,84,104,147],"frequent":[36],"problem":[37],"that":[38,181],"encountered":[40],"everyday":[41],"by":[42,217],"researchers":[43],"who":[44],"are":[45,51],"working":[46],"on":[47],"genetic":[48],"data.":[49,113],"There":[50],"some":[52],"options":[53],"available":[54,73],"for":[55,90,109,168],"compressing":[56],"storing":[58,110],"such":[59,61,111],"data,":[60],"as":[62],"general-purpose":[63],"compression":[64,80,118,186,192],"software,":[65],"PBAT/PLINK":[66],"binary":[67],"format,":[68],"etc.":[69],"However,":[70],"these":[71],"currently":[72],"methods":[74],"either":[75],"offer":[78],"rates,":[81],"or":[82],"require":[83],"great":[85],"amount":[86],"of":[87,120,134,136,143,150,160,231],"CPU":[88],"time":[89,95,167],"decompression":[91],"loading":[93,156,159],"every":[94],"accessed.":[99],"RESULTS:":[100],"Here,":[101],"we":[102,179],"propose":[103],"novel":[105],"simple":[107],"algorithm":[108,122,173,183,224],"sequencing":[112,234],"We":[114,145],"show":[115,180],"that,":[116],"factor":[119],"ranges":[123],"from":[124],"16":[125],"several":[127],"hundreds,":[128],"which":[129,153,208],"potentially":[130],"allows":[131,209],"SNP":[132],"hundreds":[135,142],"Gigabytes":[137],"stored":[140],"in":[141,236],"Megabytes.":[144],"C++":[148,203,219],"implementation":[149],"algorithm,":[152],"supports":[154],"direct":[155],"parallel":[158],"compressed":[162,211],"format":[163],"without":[164],"requiring":[165],"extra":[166],"decompression.":[169],"By":[170],"applying":[171],"simulated":[175],"real":[177],"datasets,":[178],"gives":[184],"greater":[185],"rate":[187],"than":[188],"commonly":[190],"used":[191],"methods,":[193],"data-loading":[196],"takes":[198],"less":[199],"time.":[200],"Also,":[201],"The":[202,222],"library":[204],"provides":[205],"direct-data-retrieving":[206],"functions,":[207],"information":[212],"easily":[215],"accessed":[216],"other":[218],"programs.":[220],"CONCLUSIONS:":[221],"SpeedGene":[223],"enables":[225],"analysis":[230],"next":[232],"generation":[233],"current":[237],"environment,":[239],"making":[240],"system":[241],"upgrades":[242],"unnecessary.":[243]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":4}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
