{"id":"https://openalex.org/W2148362397","doi":"https://doi.org/10.1186/1471-2105-12-s8-s8","title":"Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases","display_name":"Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases","publication_year":2011,"publication_date":"2011-10-03","ids":{"openalex":"https://openalex.org/W2148362397","doi":"https://doi.org/10.1186/1471-2105-12-s8-s8","mag":"2148362397","pmid":"https://pubmed.ncbi.nlm.nih.gov/22151178"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-s8-s8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s8-s8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S8-S8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S8-S8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088383521","display_name":"Andrew Chatr\u2010aryamontri","orcid":"https://orcid.org/0000-0002-1589-9982"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Andrew Chatr-aryamontri","raw_affiliation_strings":["School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JR, UK. a.aryamontri@ed.ac.uk","School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JR, UK"],"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JR, UK. a.aryamontri@ed.ac.uk","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JR, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058700110","display_name":"Andrew Winter","orcid":null},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Winter","raw_affiliation_strings":["School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JR, UK"],"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JR, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050128493","display_name":"Livia Perfetto","orcid":"https://orcid.org/0000-0003-4392-8725"},"institutions":[{"id":"https://openalex.org/I116067653","display_name":"University of Rome Tor Vergata","ror":"https://ror.org/02p77k626","country_code":"IT","type":"education","lineage":["https://openalex.org/I116067653"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Livia Perfetto","raw_affiliation_strings":["Department of Biology, University of Rome Tor Vergata, Rome, 00133, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Rome Tor Vergata, Rome, 00133, Italy","institution_ids":["https://openalex.org/I116067653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005573554","display_name":"Leonardo Briganti","orcid":null},"institutions":[{"id":"https://openalex.org/I116067653","display_name":"University of Rome Tor Vergata","ror":"https://ror.org/02p77k626","country_code":"IT","type":"education","lineage":["https://openalex.org/I116067653"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Leonardo Briganti","raw_affiliation_strings":["Department of Biology, University of Rome Tor Vergata, Rome, 00133, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Rome Tor Vergata, Rome, 00133, Italy","institution_ids":["https://openalex.org/I116067653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047929947","display_name":"Luana Licata","orcid":"https://orcid.org/0000-0001-5084-9000"},"institutions":[{"id":"https://openalex.org/I116067653","display_name":"University of Rome Tor Vergata","ror":"https://ror.org/02p77k626","country_code":"IT","type":"education","lineage":["https://openalex.org/I116067653"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luana Licata","raw_affiliation_strings":["Department of Biology, University of Rome Tor Vergata, Rome, 00133, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Rome Tor Vergata, Rome, 00133, Italy","institution_ids":["https://openalex.org/I116067653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074813617","display_name":"Marta Iannuccelli","orcid":"https://orcid.org/0000-0002-2374-3531"},"institutions":[{"id":"https://openalex.org/I116067653","display_name":"University of Rome Tor Vergata","ror":"https://ror.org/02p77k626","country_code":"IT","type":"education","lineage":["https://openalex.org/I116067653"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marta Iannuccelli","raw_affiliation_strings":["Department of Biology, University of Rome Tor Vergata, Rome, 00133, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Rome Tor Vergata, Rome, 00133, Italy","institution_ids":["https://openalex.org/I116067653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018540028","display_name":"Luisa Castagnoli","orcid":"https://orcid.org/0000-0001-5283-8671"},"institutions":[{"id":"https://openalex.org/I116067653","display_name":"University of Rome Tor Vergata","ror":"https://ror.org/02p77k626","country_code":"IT","type":"education","lineage":["https://openalex.org/I116067653"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luisa Castagnoli","raw_affiliation_strings":["Department of Biology, University of Rome Tor Vergata, Rome, 00133, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Rome Tor Vergata, Rome, 00133, Italy","institution_ids":["https://openalex.org/I116067653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029338279","display_name":"Gianni Cesareni","orcid":"https://orcid.org/0000-0002-9528-6018"},"institutions":[{"id":"https://openalex.org/I4210150112","display_name":"Fondazione Santa Lucia","ror":"https://ror.org/05rcxtd95","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210150112","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I116067653","display_name":"University of Rome Tor Vergata","ror":"https://ror.org/02p77k626","country_code":"IT","type":"education","lineage":["https://openalex.org/I116067653"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Gianni Cesareni","raw_affiliation_strings":["Department of Biology, University of Rome Tor Vergata, Rome, 00133, Italy","IRCSS, Fondazione Santa Lucia, Rome, 00143, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Rome Tor Vergata, Rome, 00133, Italy","institution_ids":["https://openalex.org/I116067653"]},{"raw_affiliation_string":"IRCSS, Fondazione Santa Lucia, Rome, 00143, Italy","institution_ids":["https://openalex.org/I4210150112"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057700057","display_name":"Mike Tyers","orcid":"https://orcid.org/0000-0002-9713-9994"},"institutions":[{"id":"https://openalex.org/I1291836623","display_name":"Mount Sinai Hospital","ror":"https://ror.org/05deks119","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1291836623","https://openalex.org/I4210130843"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]},{"id":"https://openalex.org/I210557978","display_name":"Lunenfeld-Tanenbaum Research Institute","ror":"https://ror.org/01s5axj25","country_code":"CA","type":"facility","lineage":["https://openalex.org/I1291836623","https://openalex.org/I210557978","https://openalex.org/I4210130843"]}],"countries":["CA","GB"],"is_corresponding":true,"raw_author_name":"Mike Tyers","raw_affiliation_strings":["Center for Systems Biology, Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Canada","School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JR, UK"],"affiliations":[{"raw_affiliation_string":"Center for Systems Biology, Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Canada","institution_ids":["https://openalex.org/I1291836623","https://openalex.org/I210557978"]},{"raw_affiliation_string":"School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JR, UK","institution_ids":["https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5057700057","https://openalex.org/A5088383521"],"corresponding_institution_ids":["https://openalex.org/I1291836623","https://openalex.org/I210557978","https://openalex.org/I98677209"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.3341,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.80177064,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"12","issue":"S8","first_page":"S8","last_page":"S8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9722999930381775,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.963699996471405,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7402464151382446},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6366121172904968},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.574993371963501},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5638716816902161},{"id":"https://openalex.org/keywords/test-set","display_name":"Test set","score":0.5562635064125061},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5538236498832703},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.5184549689292908},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.5061344504356384},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.4954429864883423},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4690912961959839},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4490807056427002},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.4482625722885132},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44163209199905396},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3381132185459137},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.31454527378082275},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.2919693887233734}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7402464151382446},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6366121172904968},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.574993371963501},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5638716816902161},{"id":"https://openalex.org/C169903167","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Test set","level":2,"score":0.5562635064125061},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5538236498832703},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.5184549689292908},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.5061344504356384},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.4954429864883423},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4690912961959839},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4490807056427002},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.4482625722885132},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44163209199905396},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3381132185459137},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.31454527378082275},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.2919693887233734},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-12-s8-s8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s8-s8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S8-S8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22151178","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22151178","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:art.torvergata.it:2108/96329","is_oa":true,"landing_page_url":"http://www.biomedcentral.com/1471-2105/12/S8/S8","pdf_url":null,"source":{"id":"https://openalex.org/S4306400993","display_name":"Cineca Institutional Research Information System (Tor Vergata University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I116067653","host_organization_name":"University of Rome Tor Vergata","host_organization_lineage":["https://openalex.org/I116067653"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:02c522f2cce64b539a1b3605d0cbbb26","is_oa":true,"landing_page_url":"https://doaj.org/article/02c522f2cce64b539a1b3605d0cbbb26","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss Suppl 8, p S8 (2011)","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt44z3n3v1","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/44z3n3v1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, vol 12, iss Suppl 8","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2278686","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3269943","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:qt44z3n3v1","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/44z3n3v1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Krallinger, Martin; Vazquez, Miguel; Leitner, Florian; Salgado, David; Chatr-aryamontri, Andrew; Winter, Andrew; \u00c2\u00a0et al.(2011). Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases. BMC Bioinformatics, 12(Suppl 8), S3. doi: http://dx.doi.org/10.1186/1471-2105-12-S8-S3. Retrieved from: http://www.escholarship.org/uc/item/44z3n3v1","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-s8-s8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s8-s8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S8-S8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1532620147","display_name":"Regulation of phosphatidylcholine metabolism","funder_award_id":"5182_4","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G1534840870","display_name":null,"funder_award_id":"22341","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G2240538154","display_name":null,"funder_award_id":"LSHG-CT-2005-518254","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G42022835","display_name":null,"funder_award_id":"R01RR024031","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G426441180","display_name":null,"funder_award_id":"82940","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G4389354971","display_name":null,"funder_award_id":"Research","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G4471152221","display_name":null,"funder_award_id":"(AIRC","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"},{"id":"https://openalex.org/G4824254523","display_name":null,"funder_award_id":"Award","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G555658846","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G6282788884","display_name":null,"funder_award_id":"Canadian Institutes of Health","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G6345853531","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7273380189","display_name":null,"funder_award_id":"BB/F010486/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G793586166","display_name":"Proteomics Standards International Molecular Exchange - Systematic Capture of Published Molecular Interaction Data","funder_award_id":"223411","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8620308813","display_name":null,"funder_award_id":"AIRC)","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"},{"id":"https://openalex.org/G944173245","display_name":"The BioGRID Database: An Open International Resource for Biological Interactions","funder_award_id":"BB/F010486/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320323054","display_name":"Associazione Italiana per la Ricerca sul Cancro","ror":"https://ror.org/02g2x7380"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2148362397.pdf","grobid_xml":"https://content.openalex.org/works/W2148362397.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W2013009523","https://openalex.org/W2013454314","https://openalex.org/W2032445314","https://openalex.org/W2044514479","https://openalex.org/W2048503857","https://openalex.org/W2053673723","https://openalex.org/W2064030835","https://openalex.org/W2075578689","https://openalex.org/W2094678200","https://openalex.org/W2097424033","https://openalex.org/W2098383595","https://openalex.org/W2100025044","https://openalex.org/W2100751507","https://openalex.org/W2101727078","https://openalex.org/W2102162073","https://openalex.org/W2102304447","https://openalex.org/W2103897355","https://openalex.org/W2112543617","https://openalex.org/W2126276057","https://openalex.org/W2130496175","https://openalex.org/W2130687290","https://openalex.org/W2133102806","https://openalex.org/W2138782665","https://openalex.org/W2139070508","https://openalex.org/W2146997276","https://openalex.org/W2150749732","https://openalex.org/W2150934340","https://openalex.org/W2152336513","https://openalex.org/W2154947819","https://openalex.org/W2158439765","https://openalex.org/W2163783674","https://openalex.org/W2416075146","https://openalex.org/W2612240612","https://openalex.org/W2915108429","https://openalex.org/W2916767477","https://openalex.org/W2917375902","https://openalex.org/W2917431650","https://openalex.org/W4210450218","https://openalex.org/W4242769232","https://openalex.org/W6759613926"],"related_works":["https://openalex.org/W2916255597","https://openalex.org/W3091569222","https://openalex.org/W2999302224","https://openalex.org/W1495833002","https://openalex.org/W2075635421","https://openalex.org/W3006227201","https://openalex.org/W2964631078","https://openalex.org/W3160627956","https://openalex.org/W4289715253","https://openalex.org/W2360236096"],"abstract_inverted_index":{"The":[0],"development":[1],"of":[2,7,18,36,80],"efficient":[3],"tools":[4],"for":[5,58],"extraction":[6],"PPI":[8,41],"data":[9],"is":[10],"a":[11],"necessary":[12],"step":[13],"to":[14,50,75],"achieve":[15],"full":[16],"curation":[17,31],"the":[19,26,34,77],"biomedical":[20],"literature.":[21],"NLP":[22,45,70],"systems":[23,71],"can":[24],"in":[25],"first":[27],"instance":[28],"facilitate":[29,76],"expert":[30,62],"by":[32,61],"refining":[33],"list":[35],"candidate":[37],"publications":[38],"that":[39],"contain":[40],"data;":[42],"more":[43],"ambitiously,":[44],"approaches":[46],"may":[47],"be":[48],"able":[49],"directly":[51],"extract":[52],"relevant":[53],"information":[54],"from":[55],"full-text":[56],"articles":[57],"rapid":[59],"inspection":[60],"curators.":[63],"Close":[64],"collaboration":[65],"between":[66],"biological":[67],"databases":[68],"and":[69],"developers":[72],"will":[73],"continue":[74],"long-term":[78],"objectives":[79],"both":[81],"disciplines.":[82]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-12T07:58:50.170612","created_date":"2025-10-10T00:00:00"}
