{"id":"https://openalex.org/W2129129117","doi":"https://doi.org/10.1186/1471-2105-12-s8-s11","title":"Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature","display_name":"Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature","publication_year":2011,"publication_date":"2011-10-03","ids":{"openalex":"https://openalex.org/W2129129117","doi":"https://doi.org/10.1186/1471-2105-12-s8-s11","mag":"2129129117","pmid":"https://pubmed.ncbi.nlm.nih.gov/22151769"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-s8-s11","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s8-s11","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S8-S11","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S8-S11","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108167631","display_name":"Xinglong Wang","orcid":"https://orcid.org/0000-0001-8657-0159"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4210157630","display_name":"National Computing Centre (United Kingdom)","ror":"https://ror.org/05gptew44","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210157630"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Xinglong Wang","raw_affiliation_strings":["National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK. xinglong.wang@manchester.ac.uk","National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK. xinglong.wang@manchester.ac.uk","institution_ids":["https://openalex.org/I4210157630"]},{"raw_affiliation_string":"National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071577126","display_name":"Rafa\u0142 Rak","orcid":"https://orcid.org/0000-0001-9780-4205"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Rafal Rak","raw_affiliation_strings":["National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087111651","display_name":"Angelo C. Restificar","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Angelo Restificar","raw_affiliation_strings":["National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076532065","display_name":"Chikashi Nobata","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Chikashi Nobata","raw_affiliation_strings":["National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088808097","display_name":"CJ Rupp","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"CJ Rupp","raw_affiliation_strings":["National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050960711","display_name":"Riza Batista-Navarro","orcid":"https://orcid.org/0000-0001-6693-7531"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Riza Theresa B Batista-Navarro","raw_affiliation_strings":["National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087735486","display_name":"Raheel Nawaz","orcid":"https://orcid.org/0000-0001-9588-0052"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Raheel Nawaz","raw_affiliation_strings":["National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077976343","display_name":"Sophia Ananiadou","orcid":"https://orcid.org/0000-0002-4097-9191"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sophia Ananiadou","raw_affiliation_strings":["National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5108167631"],"corresponding_institution_ids":["https://openalex.org/I28407311","https://openalex.org/I4210157630"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7982,"has_fulltext":true,"cited_by_count":37,"citation_normalized_percentile":{"value":0.71933275,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"12","issue":"S8","first_page":"S11","last_page":"S11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.0015999999595806003,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.00139999995008111,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.751813530921936},{"id":"https://openalex.org/keywords/binary-classification","display_name":"Binary classification","score":0.6873784065246582},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6363354325294495},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.5954578518867493},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.5776317119598389},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5604044198989868},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4981520175933838},{"id":"https://openalex.org/keywords/contest","display_name":"CONTEST","score":0.49701765179634094},{"id":"https://openalex.org/keywords/phrase","display_name":"Phrase","score":0.48901399970054626},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4823002815246582},{"id":"https://openalex.org/keywords/multi-label-classification","display_name":"Multi-label classification","score":0.466551274061203},{"id":"https://openalex.org/keywords/document-classification","display_name":"Document classification","score":0.43014103174209595},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.322151243686676},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.26075971126556396}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.751813530921936},{"id":"https://openalex.org/C66905080","wikidata":"https://www.wikidata.org/wiki/Q17005494","display_name":"Binary classification","level":3,"score":0.6873784065246582},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6363354325294495},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.5954578518867493},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.5776317119598389},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5604044198989868},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4981520175933838},{"id":"https://openalex.org/C2777582232","wikidata":"https://www.wikidata.org/wiki/Q5013414","display_name":"CONTEST","level":2,"score":0.49701765179634094},{"id":"https://openalex.org/C2776224158","wikidata":"https://www.wikidata.org/wiki/Q187931","display_name":"Phrase","level":2,"score":0.48901399970054626},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4823002815246582},{"id":"https://openalex.org/C2776482837","wikidata":"https://www.wikidata.org/wiki/Q3553958","display_name":"Multi-label classification","level":2,"score":0.466551274061203},{"id":"https://openalex.org/C2780479914","wikidata":"https://www.wikidata.org/wiki/Q302088","display_name":"Document classification","level":2,"score":0.43014103174209595},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.322151243686676},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.26075971126556396},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-12-s8-s11","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s8-s11","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S8-S11","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22151769","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22151769","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:publications/919e4258-3458-4108-939a-94ea5251902e","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/919e4258-3458-4108-939a-94ea5251902e","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Wang, X, Rak, R, Restificar, A, Nobata, C, Rupp, C J, Batista-Navarro, R T B, Nawaz, R & Ananiadou, S 2011, 'Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature', BMC Bioinformatics, vol. 12, no. 8, S11. https://doi.org/10.1186/1471-2105-12-S8-S11","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:e-space.mmu.ac.uk:623510","is_oa":true,"landing_page_url":"https://e-space.mmu.ac.uk/view/authors/f9d34b9854170ccd971e3a63ae6dc595.html>","pdf_url":"https://e-space.mmu.ac.uk/623510/8/Detecting%20experimental%20techniques%20and%20selecting%20relevant%20documents%20for%20protein-protein%20interactions%20from%20biomedical%20literatu.pdf","source":null,"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/919e4258-3458-4108-939a-94ea5251902e","is_oa":true,"landing_page_url":"http://www.biomedcentral.com/1471-2105/12/S8/S11","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-12-S8-S11.pdf","source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Wang, X, Rak, R, Restificar, A, Nobata, C, Rupp, C J, Batista-Navarro, R T B, Nawaz, R & Ananiadou, S 2011, 'Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature', BMC Bioinformatics, vol. 12, no. 8, S11. https://doi.org/10.1186/1471-2105-12-S8-S11","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:europepmc.org:2278677","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3269934","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-s8-s11","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s8-s11","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S8-S11","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1686462611","display_name":"Automated Biological Event Extraction from the Literature for Drug Discovery","funder_award_id":"BB/G013160/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4793955247","display_name":null,"funder_award_id":"BB/G53025X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5246379475","display_name":null,"funder_award_id":"BB/G013160/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320319985","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67"},{"id":"https://openalex.org/F4320319992","display_name":"British Heart Foundation","ror":"https://ror.org/02wdwnk04"},{"id":"https://openalex.org/F4320320309","display_name":"Joint Information Systems Committee","ror":"https://ror.org/01rv9gx86"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2129129117.pdf","grobid_xml":"https://content.openalex.org/works/W2129129117.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W46452414","https://openalex.org/W202303397","https://openalex.org/W1536816303","https://openalex.org/W1540550673","https://openalex.org/W1583837637","https://openalex.org/W1646278814","https://openalex.org/W1976316416","https://openalex.org/W1979495886","https://openalex.org/W1990794790","https://openalex.org/W1991154713","https://openalex.org/W2004384146","https://openalex.org/W2047782770","https://openalex.org/W2061166439","https://openalex.org/W2064030835","https://openalex.org/W2069024774","https://openalex.org/W2070771761","https://openalex.org/W2096876337","https://openalex.org/W2097678794","https://openalex.org/W2100751507","https://openalex.org/W2108706252","https://openalex.org/W2118585731","https://openalex.org/W2129113459","https://openalex.org/W2129191766","https://openalex.org/W2133993935","https://openalex.org/W2135455794","https://openalex.org/W2146751752","https://openalex.org/W2147880316","https://openalex.org/W2168866167","https://openalex.org/W2171283231","https://openalex.org/W2595461065","https://openalex.org/W2913668833"],"related_works":["https://openalex.org/W2510206144","https://openalex.org/W4376528628","https://openalex.org/W2739554176","https://openalex.org/W3031069236","https://openalex.org/W1981887710","https://openalex.org/W4205999209","https://openalex.org/W2900338305","https://openalex.org/W4308086152","https://openalex.org/W4293079970","https://openalex.org/W2900758626"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,30,165],"selection":[2],"of":[3,20,24,37,62,127,183,261,264,269,281,288,298],"relevant":[4,54],"articles":[5,11],"for":[6,56,72,87,206],"curation,":[7,58],"and":[8,44,82,116,145,161,202,219,267,300,318],"linking":[9],"those":[10],"to":[12,51,65,140,223,237,311,314,341],"experimental":[13],"techniques":[14],"confirming":[15],"the":[16,21,25,60,67,74,132,169,188,232,249,252,259,262,278,307,315,329,334,338,342],"findings":[17],"became":[18],"one":[19,182],"primary":[22],"subjects":[23],"recent":[26],"BioCreative":[27,170],"III":[28,171],"contest.":[29],"contest's":[31],"Protein-Protein":[32],"Interaction":[33,45],"(PPI)":[34],"task":[35],"consisted":[36],"two":[38,279],"sub-tasks:":[39],"Article":[40],"Classification":[41],"Task":[42,47],"(ACT)":[43],"Method":[46],"(IMT).":[48],"ACT":[49],"aimed":[50],"automatically":[52,157],"select":[53],"documents":[55,335],"PPI":[57,172],"whereas":[59,205],"goal":[61],"IMT":[63,185],"was":[64,211,255],"recognise":[66],"methods":[68,86,186],"used":[69],"in":[70,76,245,286],"experiments":[71],"identifying":[73],"interactions":[75],"full-text":[77],"articles.":[78],"RESULTS:":[79],"We":[80,136,305],"proposed":[81],"compared":[83],"several":[84],"classification-based":[85],"both":[88],"tasks,":[89],"employing":[90],"rich":[91,296],"contextual":[92,321],"features":[93,97,299,308],"as":[94,96,129,194,214,326,328],"well":[95,327],"extracted":[98],"from":[99],"external":[100],"knowledge":[101],"sources.":[102],"For":[103,152,290],"IMT,":[104],"a":[105,238,270,295],"new":[106,143],"method":[107,119,266],"that":[108,176,230,268,277,320],"classifies":[109],"pair-wise":[110],"relations":[111],"between":[112],"every":[113],"text":[114],"phrase":[115],"candidate":[117],"interaction":[118],"obtained":[120,302],"promising":[121],"results":[122,167],"with":[123,309,333],"an":[124],"F1":[125,197],"score":[126],"64.49%,":[128],"tested":[130],"on":[131,168,248],"task's":[133],"development":[134],"dataset.":[135],"also":[137,220,301],"explored":[138],"ways":[139],"combine":[141],"this":[142,265],"approach":[144,229],"more":[146],"conventional,":[147],"multi-label":[148,234,272],"document":[149,273],"classification":[150,235,240,316],"methods.":[151],"ACT,":[153,207,291],"our":[154,177,184,208,292],"classifiers":[155],"exploited":[156,294],"detected":[158],"named":[159,324],"entities":[160],"other":[162,224,285],"linguistic":[163],"information.":[164],"evaluation":[166],"test":[173,250],"datasets":[174],"showed":[175,242],"systems":[178,282],"were":[179,336],"very":[180],"competitive:":[181],"yielded":[187],"best":[189,209,253],"performance":[190,254],"among":[191,337],"all":[192],"participants,":[193],"measured":[195,215],"by":[196,216,257],"score,":[198],"Matthew's":[199],"Correlation":[200],"Coefficient":[201],"AUC":[203,217],"iP/R;":[204],"classifier":[210],"ranked":[212],"second":[213],"iP/R,":[218],"competitive":[221],"according":[222],"metrics.":[225],"CONCLUSIONS:":[226],"Our":[227],"novel":[228],"converts":[231],"multi-class,":[233,271],"problem":[236,241],"binary":[239],"much":[243],"promise":[244],"IMT.":[246],"Nevertheless,":[247],"dataset":[251],"achieved":[256],"taking":[258],"union":[260],"output":[263],"classifier,":[274],"which":[275],"indicates":[276],"types":[280],"complement":[283],"each":[284],"terms":[287],"recall.":[289],"system":[293],"set":[297],"encouraging":[303],"results.":[304],"examined":[306],"respect":[310],"their":[312],"contributions":[313],"results,":[317],"concluded":[319],"words":[322],"surrounding":[323],"entities,":[325],"MeSH":[330],"headings":[331],"associated":[332],"main":[339],"contributors":[340],"performance.":[343]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
