{"id":"https://openalex.org/W2132194807","doi":"https://doi.org/10.1186/1471-2105-12-s7-a7","title":"mDAG: a web-based tool for analyzing microarray data with multiple treatments","display_name":"mDAG: a web-based tool for analyzing microarray data with multiple treatments","publication_year":2011,"publication_date":"2011-08-05","ids":{"openalex":"https://openalex.org/W2132194807","doi":"https://doi.org/10.1186/1471-2105-12-s7-a7","mag":"2132194807"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-s7-a7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s7-a7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S7-A7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S7-A7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019979430","display_name":"Vinhthuy Phan","orcid":"https://orcid.org/0000-0001-6108-1228"},"institutions":[{"id":"https://openalex.org/I94658018","display_name":"University of Memphis","ror":"https://ror.org/01cq23130","country_code":"US","type":"education","lineage":["https://openalex.org/I94658018"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Vinhthuy T Phan","raw_affiliation_strings":["Department of Computer Science, University of Memphis, Memphis, TN, 38152, USA","Department of Computer Science, University of Memphis, Memphis, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Memphis, Memphis, TN, 38152, USA","institution_ids":["https://openalex.org/I94658018"]},{"raw_affiliation_string":"Department of Computer Science, University of Memphis, Memphis, USA","institution_ids":["https://openalex.org/I94658018"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043745628","display_name":"Nam S. Vo","orcid":"https://orcid.org/0000-0002-5454-9176"},"institutions":[{"id":"https://openalex.org/I94658018","display_name":"University of Memphis","ror":"https://ror.org/01cq23130","country_code":"US","type":"education","lineage":["https://openalex.org/I94658018"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nam S Vo","raw_affiliation_strings":["Bioinformatics Program, University of Memphis, Memphis, TN, 38152, USA","Bioinformatics Program, University of Memphis, Memphis, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Program, University of Memphis, Memphis, TN, 38152, USA","institution_ids":["https://openalex.org/I94658018"]},{"raw_affiliation_string":"Bioinformatics Program, University of Memphis, Memphis, USA","institution_ids":["https://openalex.org/I94658018"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058407840","display_name":"Thomas R. Sutter","orcid":"https://orcid.org/0000-0002-6088-6320"},"institutions":[{"id":"https://openalex.org/I94658018","display_name":"University of Memphis","ror":"https://ror.org/01cq23130","country_code":"US","type":"education","lineage":["https://openalex.org/I94658018"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas R Sutter","raw_affiliation_strings":["Department of Biological Sciences, University of Memphis, Memphis, TN, 38152, USA","University of Memphis#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Memphis, Memphis, TN, 38152, USA","institution_ids":["https://openalex.org/I94658018"]},{"raw_affiliation_string":"University of Memphis#TAB#","institution_ids":["https://openalex.org/I94658018"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5019979430"],"corresponding_institution_ids":["https://openalex.org/I94658018"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13072778,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"12","issue":"S7","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.8843221664428711},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5990657806396484},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.5616027116775513},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5507696866989136},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.536740243434906},{"id":"https://openalex.org/keywords/post-hoc","display_name":"Post hoc","score":0.5253657102584839},{"id":"https://openalex.org/keywords/microarray-databases","display_name":"Microarray databases","score":0.4707548916339874},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.427751749753952},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4218946397304535},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4041987657546997},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3366014361381531},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.32230329513549805},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2800818681716919},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2211359143257141},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18207672238349915},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.09816741943359375},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.08025872707366943}],"concepts":[{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.8843221664428711},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5990657806396484},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.5616027116775513},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5507696866989136},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.536740243434906},{"id":"https://openalex.org/C2992886853","wikidata":"https://www.wikidata.org/wiki/Q18381816","display_name":"Post hoc","level":2,"score":0.5253657102584839},{"id":"https://openalex.org/C548314002","wikidata":"https://www.wikidata.org/wiki/Q6839218","display_name":"Microarray databases","level":5,"score":0.4707548916339874},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.427751749753952},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4218946397304535},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4041987657546997},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3366014361381531},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.32230329513549805},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2800818681716919},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2211359143257141},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18207672238349915},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09816741943359375},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.08025872707366943},{"id":"https://openalex.org/C199343813","wikidata":"https://www.wikidata.org/wiki/Q12128","display_name":"Dentistry","level":1,"score":0.0},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1186/1471-2105-12-s7-a7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s7-a7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S7-A7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2197289","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3194216","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-s7-a7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s7-a7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S7-A7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320308814","display_name":"Center for Alternatives to Animal Testing, Johns Hopkins Bloomberg School of Public Health","ror":"https://ror.org/00za53h95"},{"id":"https://openalex.org/F4320310145","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2132194807.pdf","grobid_xml":"https://content.openalex.org/works/W2132194807.grobid-xml"},"referenced_works_count":2,"referenced_works":["https://openalex.org/W2041208925","https://openalex.org/W2117080336"],"related_works":["https://openalex.org/W2943416042","https://openalex.org/W1544923801","https://openalex.org/W3152114242","https://openalex.org/W77579337","https://openalex.org/W2024853484","https://openalex.org/W2490137852","https://openalex.org/W2056932428","https://openalex.org/W3023720143","https://openalex.org/W1483316219","https://openalex.org/W2412120523"],"abstract_inverted_index":{"Background":[0],"In":[1],"microarray":[2],"experiments":[3],"involving":[4],"multiple":[5],"treatments,":[6],"pairwise":[7,30],"comparisons":[8,31],"between":[9],"all":[10,29],"pairs":[11,47],"of":[12,48],"treatments":[13],"are":[14],"desirable":[15],"but":[16],"expensive.":[17],"To":[18],"cope":[19],"with":[20],"this,":[21],"we":[22],"previously":[23],"introduced":[24],"a":[25,33],"method":[26,38],"that":[27],"performed":[28],"in":[32,57],"post":[34],"hoc":[35],"manner.":[36],"This":[37],"employs":[39],"directed":[40],"graphs":[41],"to":[42,46],"represent":[43],"gene":[44],"response":[45],"treatments.":[49],"It":[50],"has":[51],"been":[52],"applied":[53],"and":[54,59],"found":[55],"useful":[56],"identifying":[58],"differentiating":[60],"genes":[61],"sharing":[62],"similar":[63],"functional":[64],"pathways":[65],"[1,2].":[66]},"counts_by_year":[],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}