{"id":"https://openalex.org/W2032443328","doi":"https://doi.org/10.1186/1471-2105-12-s7-a16","title":"categoryCompare: high-throughput data meta-analysis using gene annotations","display_name":"categoryCompare: high-throughput data meta-analysis using gene annotations","publication_year":2011,"publication_date":"2011-08-05","ids":{"openalex":"https://openalex.org/W2032443328","doi":"https://doi.org/10.1186/1471-2105-12-s7-a16","mag":"2032443328"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-s7-a16","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s7-a16","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S7-A16","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S7-A16","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062202807","display_name":"Robert M Flight","orcid":"https://orcid.org/0000-0001-8141-7788"},"institutions":[{"id":"https://openalex.org/I142740786","display_name":"University of Louisville","ror":"https://ror.org/01ckdn478","country_code":"US","type":"education","lineage":["https://openalex.org/I142740786"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Robert M Flight","raw_affiliation_strings":["Department of Anatomical Sciences and Neurobiology, University of Louisville, Louisville, KY, 40292, USA","Department of Anatomical Sciences and Neurobiology, University of Louisville, Louisville, USA"],"affiliations":[{"raw_affiliation_string":"Department of Anatomical Sciences and Neurobiology, University of Louisville, Louisville, KY, 40292, USA","institution_ids":["https://openalex.org/I142740786"]},{"raw_affiliation_string":"Department of Anatomical Sciences and Neurobiology, University of Louisville, Louisville, USA","institution_ids":["https://openalex.org/I142740786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038602012","display_name":"Jeffrey C. Petruska","orcid":"https://orcid.org/0000-0002-3068-2677"},"institutions":[{"id":"https://openalex.org/I142740786","display_name":"University of Louisville","ror":"https://ror.org/01ckdn478","country_code":"US","type":"education","lineage":["https://openalex.org/I142740786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey C Petruska","raw_affiliation_strings":["Department of Anatomical Sciences and Neurobiology, University of Louisville, Louisville, KY, 40292, USA","Department of Anatomical Sciences and Neurobiology, University of Louisville, Louisville, USA"],"affiliations":[{"raw_affiliation_string":"Department of Anatomical Sciences and Neurobiology, University of Louisville, Louisville, KY, 40292, USA","institution_ids":["https://openalex.org/I142740786"]},{"raw_affiliation_string":"Department of Anatomical Sciences and Neurobiology, University of Louisville, Louisville, USA","institution_ids":["https://openalex.org/I142740786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060935645","display_name":"Benjamin J. Harrison","orcid":"https://orcid.org/0000-0002-6078-5060"},"institutions":[{"id":"https://openalex.org/I142740786","display_name":"University of Louisville","ror":"https://ror.org/01ckdn478","country_code":"US","type":"education","lineage":["https://openalex.org/I142740786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin J Harrison","raw_affiliation_strings":["Department of Anatomical Sciences and Neurobiology, University of Louisville, Louisville, KY, 40292, USA","Department of Anatomical Sciences and Neurobiology, University of Louisville, Louisville, USA"],"affiliations":[{"raw_affiliation_string":"Department of Anatomical Sciences and Neurobiology, University of Louisville, Louisville, KY, 40292, USA","institution_ids":["https://openalex.org/I142740786"]},{"raw_affiliation_string":"Department of Anatomical Sciences and Neurobiology, University of Louisville, Louisville, USA","institution_ids":["https://openalex.org/I142740786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034707578","display_name":"Eric C. Rouchka","orcid":"https://orcid.org/0000-0003-3487-6572"},"institutions":[{"id":"https://openalex.org/I142740786","display_name":"University of Louisville","ror":"https://ror.org/01ckdn478","country_code":"US","type":"education","lineage":["https://openalex.org/I142740786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric C Rouchka","raw_affiliation_strings":["Department of Computer Engineering and Computer Science, University of Louisville, Louisville, KY, 40292, USA","Department of Computer Engineering and Computer Science, University of Louisville, Louisville, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering and Computer Science, University of Louisville, Louisville, KY, 40292, USA","institution_ids":["https://openalex.org/I142740786"]},{"raw_affiliation_string":"Department of Computer Engineering and Computer Science, University of Louisville, Louisville, USA","institution_ids":["https://openalex.org/I142740786"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5062202807"],"corresponding_institution_ids":["https://openalex.org/I142740786"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09250444,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"12","issue":"S7","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9876000285148621,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.933899998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.645453691482544},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5430802702903748},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5289093255996704},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5263784527778625},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.33472535014152527},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33196136355400085},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.29560649394989014},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.18652072548866272},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.07415521144866943}],"concepts":[{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.645453691482544},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5430802702903748},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5289093255996704},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5263784527778625},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.33472535014152527},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33196136355400085},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29560649394989014},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.18652072548866272},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.07415521144866943},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-12-s7-a16","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s7-a16","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S7-A16","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:9feb1ffcb60e4b7e8e8ba5fc26a0a60e","is_oa":true,"landing_page_url":"https://doaj.org/article/9feb1ffcb60e4b7e8e8ba5fc26a0a60e","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss Suppl 7, p A16 (2011)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2197279","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3194206","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-s7-a16","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s7-a16","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S7-A16","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2858387860","display_name":null,"funder_award_id":"ES014443","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G412758681","display_name":null,"funder_award_id":"P30ES014443","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5143913891","display_name":null,"funder_award_id":"RR0164","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306485","display_name":"Christopher and Dana Reeve Foundation","ror":"https://ror.org/0430rna51"},{"id":"https://openalex.org/F4320309490","display_name":"Paralyzed Veterans of America","ror":"https://ror.org/00pfg3v73"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2032443328.pdf","grobid_xml":"https://content.openalex.org/works/W2032443328.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2151865869","https://openalex.org/W2117258802","https://openalex.org/W4234157524"],"abstract_inverted_index":{"Background":[0],"Many":[1],"current":[2],"DNA":[3],"microarray":[4],"and":[5],"other":[6],"high-throughput":[7],"data":[8],"meta-analysis":[9],"studies":[10],"concentrate":[11],"on":[12,44],"deriving":[13],"a":[14,29,55],"concordant":[15],"list":[16],"of":[17],"genes":[18,26,46],"across":[19],"many":[20],"experiments":[21],"to":[22],"discover":[23],"the":[24,45],"\u201ctrue\u201d":[25],"responsible":[27],"for":[28],"particular":[30],"disease":[31],"process":[32,58],"or":[33,36,50,57],"biological":[34],"pathway":[35,56],"cellular":[37],"response":[38],"(Figure":[39],"1A).":[40],"However,":[41],"by":[42],"concentrating":[43],"in":[47],"common,":[48],"similarities":[49],"differences":[51],"that":[52],"exist":[53],"at":[54],"level":[59],"may":[60],"be":[61],"missed.":[62]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2016-06-24T00:00:00"}
