{"id":"https://openalex.org/W2102937034","doi":"https://doi.org/10.1186/1471-2105-12-s2-s2","title":"Building the process-drug\u2013side effect network to discover the relationship between biological Processes and side effects","display_name":"Building the process-drug\u2013side effect network to discover the relationship between biological Processes and side effects","publication_year":2011,"publication_date":"2011-03-29","ids":{"openalex":"https://openalex.org/W2102937034","doi":"https://doi.org/10.1186/1471-2105-12-s2-s2","mag":"2102937034","pmid":"https://pubmed.ncbi.nlm.nih.gov/21489221"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-s2-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s2-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S2-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S2-S2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078290834","display_name":"Sejoon Lee","orcid":"https://orcid.org/0000-0002-4548-7436"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sejoon Lee","raw_affiliation_strings":["Bio and Brain Engineering Department, KAIST, Daejeon 305-701, South Korea","Bio and Brain Engineering Department, KAIST, Daejeon, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bio and Brain Engineering Department, KAIST, Daejeon 305-701, South Korea","institution_ids":["https://openalex.org/I157485424"]},{"raw_affiliation_string":"Bio and Brain Engineering Department, KAIST, Daejeon, South Korea","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057288463","display_name":"Kwang H. Lee","orcid":"https://orcid.org/0000-0002-3733-6427"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kwang H Lee","raw_affiliation_strings":["Bio and Brain Engineering Department, KAIST, Daejeon, 305-701, South Korea","Bio and Brain Engineering Department, KAIST, Daejeon, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bio and Brain Engineering Department, KAIST, Daejeon, 305-701, South Korea","institution_ids":["https://openalex.org/I157485424"]},{"raw_affiliation_string":"Bio and Brain Engineering Department, KAIST, Daejeon, South Korea","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045749444","display_name":"Min Song","orcid":"https://orcid.org/0000-0003-3255-1600"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Min Song","raw_affiliation_strings":["Information Systems Department, New Jersey Institute of Technology, University Heights, Newark, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Systems Department, New Jersey Institute of Technology, University Heights, Newark, USA","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037879375","display_name":"Doheon Lee","orcid":"https://orcid.org/0000-0001-9070-4316"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Doheon Lee","raw_affiliation_strings":["Bio and Brain Engineering Department, KAIST, Daejeon, 305-701, South Korea","Bio and Brain Engineering Department, KAIST, Daejeon, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bio and Brain Engineering Department, KAIST, Daejeon, 305-701, South Korea","institution_ids":["https://openalex.org/I157485424"]},{"raw_affiliation_string":"Bio and Brain Engineering Department, KAIST, Daejeon, South Korea","institution_ids":["https://openalex.org/I157485424"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5037879375","https://openalex.org/A5045749444"],"corresponding_institution_ids":["https://openalex.org/I118118575","https://openalex.org/I157485424"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.8247,"has_fulltext":true,"cited_by_count":67,"citation_normalized_percentile":{"value":0.85137028,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"12","issue":"S2","first_page":"S2","last_page":"S2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5601999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5601999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.2842000126838684,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.02459999918937683,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/side-effect","display_name":"Side effect (computer science)","score":0.6653103232383728},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.624546468257904},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5227168202400208},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5000264644622803},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4998316764831543},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.4632471799850464},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.45588362216949463},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.43119844794273376},{"id":"https://openalex.org/keywords/limiting","display_name":"Limiting","score":0.42662298679351807},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3667066693305969},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.2808842658996582},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.26691192388534546},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.263314425945282},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09131884574890137}],"concepts":[{"id":"https://openalex.org/C3454156","wikidata":"https://www.wikidata.org/wiki/Q1144241","display_name":"Side effect (computer science)","level":2,"score":0.6653103232383728},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.624546468257904},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5227168202400208},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5000264644622803},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4998316764831543},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.4632471799850464},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.45588362216949463},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.43119844794273376},{"id":"https://openalex.org/C188198153","wikidata":"https://www.wikidata.org/wiki/Q1613840","display_name":"Limiting","level":2,"score":0.42662298679351807},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3667066693305969},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.2808842658996582},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.26691192388534546},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.263314425945282},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09131884574890137},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016907","descriptor_name":"Adverse Drug Reaction Reporting Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016907","descriptor_name":"Adverse Drug Reaction Reporting Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016907","descriptor_name":"Adverse Drug Reaction Reporting Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-12-s2-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s2-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S2-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21489221","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21489221","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:dff8064addba4f61abe9912e7bef04d1","is_oa":true,"landing_page_url":"https://doaj.org/article/dff8064addba4f61abe9912e7bef04d1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss Suppl 2, p S2 (2011)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3073182","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3073182","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-s2-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s2-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S2-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2880794353","display_name":null,"funder_award_id":"R32-2008-000-10218-0","funder_id":"https://openalex.org/F4320322349","funder_display_name":"Ministry of Education, Science and Technology"},{"id":"https://openalex.org/G8814338649","display_name":null,"funder_award_id":"2009-0086964","funder_id":"https://openalex.org/F4320322349","funder_display_name":"Ministry of Education, Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320322091","display_name":"Korea Institute of Science and Technology","ror":"https://ror.org/05kzfa883"},{"id":"https://openalex.org/F4320322105","display_name":"Korea Institute of Science and Technology Information","ror":"https://ror.org/01k4yrm29"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320322349","display_name":"Ministry of Education, Science and Technology","ror":"https://ror.org/01p262204"},{"id":"https://openalex.org/F4320338417","display_name":"Basic Research Laboratory","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2102937034.pdf","grobid_xml":"https://content.openalex.org/works/W2102937034.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W108873621","https://openalex.org/W1532433987","https://openalex.org/W1986397115","https://openalex.org/W1993434718","https://openalex.org/W2003239104","https://openalex.org/W2009313526","https://openalex.org/W2018321060","https://openalex.org/W2019096410","https://openalex.org/W2020001669","https://openalex.org/W2024714351","https://openalex.org/W2036424674","https://openalex.org/W2081687495","https://openalex.org/W2103017472","https://openalex.org/W2107152269","https://openalex.org/W2121604817","https://openalex.org/W2130410032","https://openalex.org/W2134144722","https://openalex.org/W2138512826","https://openalex.org/W2142572836","https://openalex.org/W2147880316","https://openalex.org/W2154896031","https://openalex.org/W2156972666","https://openalex.org/W2165979821","https://openalex.org/W2260440544","https://openalex.org/W2411104924","https://openalex.org/W4250788613"],"related_works":["https://openalex.org/W2029404707","https://openalex.org/W4285325679","https://openalex.org/W1928239295","https://openalex.org/W2480711475","https://openalex.org/W4282982070","https://openalex.org/W2411788938","https://openalex.org/W2487963770","https://openalex.org/W4300274844","https://openalex.org/W155385625","https://openalex.org/W1985351605"],"abstract_inverted_index":{"BACKGROUND:":[0],"Side":[1],"effects":[2,113,192,279],"are":[3,10,151],"unwanted":[4],"responses":[5],"to":[6,49,80,191,221,270],"drug":[7],"treatment":[8],"and":[9,41,90,111,133,142,159,201,241,277,299,308],"important":[11],"resources":[12],"for":[13,127,292],"human":[14,324],"phenotype":[15,85],"information.":[16],"The":[17,226,259],"recent":[18],"development":[19],"of":[20,54,93,96,103,114,175,250,319],"a":[21,32,198,248,287,311],"database":[22],"on":[23,73,98,322],"side":[24,27,43,112,147,219,253,278,300],"effects,":[25],"the":[26,37,52,84,94,101,106,146,155,160,173,217,237,242,264,294,304,314,317,323],"effect":[28,95,162,220,231,244,266,290,318],"resource":[29],"(SIDER),":[30],"is":[31,61,165,206],"first":[33],"step":[34],"in":[35,167,189,208,280],"documenting":[36],"relationship":[38,60,107,295,305],"between":[39,108,131,274,296,306],"drugs":[40,55,64,81,97,115,132,215,307,321],"their":[42],"effects.":[44,301],"It":[45],"is,":[46],"however,":[47],"insufficient":[48],"simply":[50],"find":[51,271],"association":[53],"with":[56,184],"biological":[57,67,109,134,149,176,255,275,297],"processes;":[58],"that":[59,65,82,182,263],"crucial":[62],"because":[63],"influence":[66,83],"processes":[68,78,110,150,177,213,276,298],"can":[69],"have":[70],"an":[71,281],"impact":[72],"phenotype.":[74,99],"Therefore,":[75],"knowing":[76],"which":[77],"respond":[79],"will":[86],"enable":[87],"more":[88],"effective":[89],"systematic":[91],"study":[92],"To":[100],"best":[102],"our":[104,180],"knowledge,":[105],"has":[116],"not":[117],"yet":[118],"been":[119],"systematically":[120,128],"researched.":[121],"METHODS:":[122],"We":[123,246,285],"propose":[124,286],"3":[125],"steps":[126],"searching":[129],"relationships":[130,273],"processes:":[135],"enrichment":[136],"scores":[137],"(ES)":[138],"calculations,":[139],"t-score":[140],"calculation,":[141],"threshold-based":[143],"filtering.":[144],"Subsequently,":[145],"effect-related":[148],"found":[152],"by":[153,171,179,210,214,235],"merging":[154,236],"drug-biological":[156,238],"process":[157,239,256],"network":[158,228,240,249,267,291],"drug-side":[161,243],"network.":[163,245],"Evaluation":[164],"conducted":[166],"2":[168],"ways:":[169],"first,":[170],"discerning":[172],"number":[174],"discovered":[178],"method":[181],"co-occur":[183],"Gene":[185],"Ontology":[186],"(GO)":[187],"terms":[188],"relation":[190,257],"extracted":[193],"from":[194],"PubMed":[195],"records":[196],"using":[197],"text-mining":[199],"technique":[200],"second,":[202],"determining":[203],"whether":[204],"there":[205],"improvement":[207],"performance":[209],"limiting":[211],"response":[212],"sharing":[216],"same":[218],"frequent":[222],"ones":[223],"alone.":[224],"RESULTS:":[225],"multi-level":[227,312],"(the":[229],"process-drug-side":[230,265,289],"network)":[232],"was":[233,268],"built":[234],"generated":[247],"74":[251],"drugs-168":[252],"effects-2209":[254],"resources.":[258],"preliminary":[260],"results":[261],"showed":[262],"able":[269],"meaningful":[272],"efficient":[282],"manner.":[283],"CONCLUSIONS:":[284],"novel":[288],"discovering":[293],"By":[302],"exploring":[303],"phenotypes":[309],"through":[310],"network,":[313],"mechanisms":[315],"underlying":[316],"specific":[320],"body":[325],"may":[326],"be":[327],"understood.":[328]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":5}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
