{"id":"https://openalex.org/W2109591678","doi":"https://doi.org/10.1186/1471-2105-12-s11-a7","title":"Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data","display_name":"Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data","publication_year":2011,"publication_date":"2011-11-21","ids":{"openalex":"https://openalex.org/W2109591678","doi":"https://doi.org/10.1186/1471-2105-12-s11-a7","mag":"2109591678"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-s11-a7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s11-a7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S11-A7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S11-A7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000233990","display_name":"Sebastian J. Schulthei\u00df","orcid":"https://orcid.org/0000-0001-8488-906X"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210147862","display_name":"Friedrich Miescher Laboratory","ror":"https://ror.org/04vh1tq58","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Sebastian J Schultheiss","raw_affiliation_strings":["Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210147862"]},{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046031524","display_name":"G\u00e9raldine Jean","orcid":"https://orcid.org/0000-0002-1534-2682"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210147862","display_name":"Friedrich Miescher Laboratory","ror":"https://ror.org/04vh1tq58","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"G\u00e9raldine Jean","raw_affiliation_strings":["Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210147862"]},{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000441812","display_name":"Jonas Behr","orcid":"https://orcid.org/0000-0002-1288-1322"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210147862","display_name":"Friedrich Miescher Laboratory","ror":"https://ror.org/04vh1tq58","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jonas Behr","raw_affiliation_strings":["Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210147862"]},{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090404774","display_name":"Regina Bohnert","orcid":null},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210147862","display_name":"Friedrich Miescher Laboratory","ror":"https://ror.org/04vh1tq58","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Regina Bohnert","raw_affiliation_strings":["Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210147862"]},{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109294877","display_name":"Philipp Drewe","orcid":null},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210147862","display_name":"Friedrich Miescher Laboratory","ror":"https://ror.org/04vh1tq58","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Philipp Drewe","raw_affiliation_strings":["Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210147862"]},{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014060431","display_name":"Nico G\u00f6rnitz","orcid":"https://orcid.org/0000-0002-5222-3631"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210147862","display_name":"Friedrich Miescher Laboratory","ror":"https://ror.org/04vh1tq58","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]},{"id":"https://openalex.org/I4577782","display_name":"Technische Universit\u00e4t Berlin","ror":"https://ror.org/03v4gjf40","country_code":"DE","type":"education","lineage":["https://openalex.org/I4577782"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nico G\u00f6rnitz","raw_affiliation_strings":["Department of Software Engineering and Theoretical Computer Science, Technical University Berlin, 10578, Berlin, Germany","Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany","Department of Software Engineering and Theoretical Computer Science, Technical University Berlin, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Software Engineering and Theoretical Computer Science, Technical University Berlin, 10578, Berlin, Germany","institution_ids":["https://openalex.org/I4577782"]},{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210147862"]},{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]},{"raw_affiliation_string":"Department of Software Engineering and Theoretical Computer Science, Technical University Berlin, Berlin, Germany","institution_ids":["https://openalex.org/I4577782"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070168682","display_name":"Andr\u00e9 Kahles","orcid":"https://orcid.org/0000-0002-3411-0692"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210147862","display_name":"Friedrich Miescher Laboratory","ror":"https://ror.org/04vh1tq58","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andr\u00e9 Kahles","raw_affiliation_strings":["Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210147862"]},{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019814805","display_name":"Pramod Kaushik Mudrakarta","orcid":null},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210147862","display_name":"Friedrich Miescher Laboratory","ror":"https://ror.org/04vh1tq58","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Pramod Mudrakarta","raw_affiliation_strings":["Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210147862"]},{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031590541","display_name":"Vipin T. Sreedharan","orcid":"https://orcid.org/0000-0002-3542-3893"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210147862","display_name":"Friedrich Miescher Laboratory","ror":"https://ror.org/04vh1tq58","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Vipin T Sreedharan","raw_affiliation_strings":["Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210147862"]},{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031822697","display_name":"Georg Zeller","orcid":"https://orcid.org/0000-0003-1429-7485"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210147862","display_name":"Friedrich Miescher Laboratory","ror":"https://ror.org/04vh1tq58","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]},{"id":"https://openalex.org/I4210153543","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560","https://openalex.org/I4210153543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Georg Zeller","raw_affiliation_strings":["Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","Structural and Computational Biology Unit, European Molecular Biology Laboratory, 69117, Heidelberg, Germany","Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany","Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210147862"]},{"raw_affiliation_string":"Structural and Computational Biology Unit, European Molecular Biology Laboratory, 69117, Heidelberg, Germany","institution_ids":["https://openalex.org/I4210153543"]},{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]},{"raw_affiliation_string":"Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany","institution_ids":["https://openalex.org/I4210153543"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035416263","display_name":"Gunnar R\u00e4tsch","orcid":"https://orcid.org/0000-0001-5486-8532"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210147862","display_name":"Friedrich Miescher Laboratory","ror":"https://ror.org/04vh1tq58","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gunnar R\u00e4tsch","raw_affiliation_strings":["Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210147862"]},{"raw_affiliation_string":"Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5000233990"],"corresponding_institution_ids":["https://openalex.org/I149899117","https://openalex.org/I4210147862"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.365,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.59988774,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"12","issue":"S11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7880939841270447},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.6559163331985474},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4772343933582306},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43339288234710693},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3556959927082062},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32170823216438293},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17698907852172852},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13222482800483704},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1314842700958252},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.048119574785232544}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7880939841270447},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.6559163331985474},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4772343933582306},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43339288234710693},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3556959927082062},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32170823216438293},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17698907852172852},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13222482800483704},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1314842700958252},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.048119574785232544}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-12-s11-a7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s11-a7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S11-A7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:HAL:hal-00914308v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00914308","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Seventh International Society for Computational Biology (ISCB) Student Council Symposium 2011, Jul 2011, Austria. 12(Suppl 11):A7, &#x27E8;10.1186/1471-2105-12-S11-A7&#x27E9;","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:edoc.mpg.de:581611","is_oa":false,"landing_page_url":"http://edoc.mpg.de/581611","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, v.12, A7-A7 (2011)","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:2283519","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3277255","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-s11-a7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s11-a7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S11-A7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.44999998807907104,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2109591678.pdf","grobid_xml":"https://content.openalex.org/works/W2109591678.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1562006861","https://openalex.org/W2027383523","https://openalex.org/W2097065948","https://openalex.org/W2098849734","https://openalex.org/W2136482257","https://openalex.org/W2138773756","https://openalex.org/W2519703809","https://openalex.org/W3085899260"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933","https://openalex.org/W1641042124"],"abstract_inverted_index":{"International":[0],"audience":[1]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-26T07:53:14.480251","created_date":"2025-10-10T00:00:00"}
