{"id":"https://openalex.org/W1995528370","doi":"https://doi.org/10.1186/1471-2105-12-s10-s7","title":"Constructing a robust protein-protein interaction network by integrating multiple public databases","display_name":"Constructing a robust protein-protein interaction network by integrating multiple public databases","publication_year":2011,"publication_date":"2011-10-18","ids":{"openalex":"https://openalex.org/W1995528370","doi":"https://doi.org/10.1186/1471-2105-12-s10-s7","mag":"1995528370","pmid":"https://pubmed.ncbi.nlm.nih.gov/22165958"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-s10-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s10-s7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S10-S7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S10-S7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012889537","display_name":"Venkata Swamy Martha","orcid":null},"institutions":[{"id":"https://openalex.org/I102401767","display_name":"University of Arkansas at Little Rock","ror":"https://ror.org/04fttyv97","country_code":"US","type":"education","lineage":["https://openalex.org/I102401767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Venkata-Swamy Martha","raw_affiliation_strings":["Department of Information Science, University of Arkansas at Little Rock, 2801 S, University Ave, Little Rock, AR 72204-1099, USA","Department of Information Science, University of Arkansas at Little Rock, Little Rock, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Science, University of Arkansas at Little Rock, 2801 S, University Ave, Little Rock, AR 72204-1099, USA","institution_ids":["https://openalex.org/I102401767"]},{"raw_affiliation_string":"Department of Information Science, University of Arkansas at Little Rock, Little Rock, USA","institution_ids":["https://openalex.org/I102401767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100459796","display_name":"Zhichao Liu","orcid":"https://orcid.org/0000-0001-8102-2399"},"institutions":[{"id":"https://openalex.org/I1304557061","display_name":"National Center for Toxicological Research","ror":"https://ror.org/05jmhh281","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I1320320070","display_name":"United States Food and Drug Administration","ror":"https://ror.org/034xvzb47","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhichao Liu","raw_affiliation_strings":["Center for Bioinformatics, Division of Systems Biology, National Center for Toxicological Research, US Food and Drug Administration, 3900 NCTR Road, Jefferson, AR, 72079, USA","Center for Bioinformatics, Division of Systems Biology, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Division of Systems Biology, National Center for Toxicological Research, US Food and Drug Administration, 3900 NCTR Road, Jefferson, AR, 72079, USA","institution_ids":["https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"raw_affiliation_string":"Center for Bioinformatics, Division of Systems Biology, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, USA","institution_ids":["https://openalex.org/I1304557061"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083561214","display_name":"Li Guo","orcid":"https://orcid.org/0000-0002-2529-7643"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210133325","display_name":"Institute of Process Engineering","ror":"https://ror.org/03j4x9j18","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210133325"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Guo","raw_affiliation_strings":["State Key Laboratory of Multiphase Complex Systems, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, 100190, P.R. China","State Key Laboratory of Multiphase Complex Systems Institute of Process Engineering Chinese Academy of Sciences Beijing P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Multiphase Complex Systems, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, 100190, P.R. China","institution_ids":["https://openalex.org/I4210133325"]},{"raw_affiliation_string":"State Key Laboratory of Multiphase Complex Systems Institute of Process Engineering Chinese Academy of Sciences Beijing P. R. China","institution_ids":["https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110507775","display_name":"Zhenqiang Su","orcid":null},"institutions":[{"id":"https://openalex.org/I1304557061","display_name":"National Center for Toxicological Research","ror":"https://ror.org/05jmhh281","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I61822063","display_name":"ICF International (United States)","ror":"https://ror.org/0156f0c06","country_code":"US","type":"company","lineage":["https://openalex.org/I61822063"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhenqiang Su","raw_affiliation_strings":["ICF International at FDA's National Center for Toxicological Research, 3900 NCTR Rd, Jefferson, AR, 72079, USA","ICF International at FDA\u2019s National Center for Toxicological Research, Jefferson, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICF International at FDA's National Center for Toxicological Research, 3900 NCTR Rd, Jefferson, AR, 72079, USA","institution_ids":["https://openalex.org/I1304557061","https://openalex.org/I61822063"]},{"raw_affiliation_string":"ICF International at FDA\u2019s National Center for Toxicological Research, Jefferson, USA","institution_ids":["https://openalex.org/I1304557061"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001745035","display_name":"Yanbin Ye","orcid":"https://orcid.org/0000-0002-1325-1517"},"institutions":[{"id":"https://openalex.org/I1304557061","display_name":"National Center for Toxicological Research","ror":"https://ror.org/05jmhh281","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I61822063","display_name":"ICF International (United States)","ror":"https://ror.org/0156f0c06","country_code":"US","type":"company","lineage":["https://openalex.org/I61822063"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yanbin Ye","raw_affiliation_strings":["ICF International at FDA's National Center for Toxicological Research, 3900 NCTR Rd, Jefferson, AR, 72079, USA","ICF International at FDA\u2019s National Center for Toxicological Research, Jefferson, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICF International at FDA's National Center for Toxicological Research, 3900 NCTR Rd, Jefferson, AR, 72079, USA","institution_ids":["https://openalex.org/I1304557061","https://openalex.org/I61822063"]},{"raw_affiliation_string":"ICF International at FDA\u2019s National Center for Toxicological Research, Jefferson, USA","institution_ids":["https://openalex.org/I1304557061"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103228349","display_name":"Hong Fang","orcid":"https://orcid.org/0000-0002-2330-1469"},"institutions":[{"id":"https://openalex.org/I1304557061","display_name":"National Center for Toxicological Research","ror":"https://ror.org/05jmhh281","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I61822063","display_name":"ICF International (United States)","ror":"https://ror.org/0156f0c06","country_code":"US","type":"company","lineage":["https://openalex.org/I61822063"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hong Fang","raw_affiliation_strings":["ICF International at FDA's National Center for Toxicological Research, 3900 NCTR Rd, Jefferson, AR, 72079, USA","ICF International at FDA\u2019s National Center for Toxicological Research, Jefferson, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICF International at FDA's National Center for Toxicological Research, 3900 NCTR Rd, Jefferson, AR, 72079, USA","institution_ids":["https://openalex.org/I1304557061","https://openalex.org/I61822063"]},{"raw_affiliation_string":"ICF International at FDA\u2019s National Center for Toxicological Research, Jefferson, USA","institution_ids":["https://openalex.org/I1304557061"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042841855","display_name":"Don Ding","orcid":null},"institutions":[{"id":"https://openalex.org/I1304557061","display_name":"National Center for Toxicological Research","ror":"https://ror.org/05jmhh281","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I61822063","display_name":"ICF International (United States)","ror":"https://ror.org/0156f0c06","country_code":"US","type":"company","lineage":["https://openalex.org/I61822063"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Don Ding","raw_affiliation_strings":["ICF International at FDA's National Center for Toxicological Research, 3900 NCTR Rd, Jefferson, AR, 72079, USA","ICF International at FDA\u2019s National Center for Toxicological Research, Jefferson, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICF International at FDA's National Center for Toxicological Research, 3900 NCTR Rd, Jefferson, AR, 72079, USA","institution_ids":["https://openalex.org/I1304557061","https://openalex.org/I61822063"]},{"raw_affiliation_string":"ICF International at FDA\u2019s National Center for Toxicological Research, Jefferson, USA","institution_ids":["https://openalex.org/I1304557061"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068886380","display_name":"Weida Tong","orcid":"https://orcid.org/0000-0003-3488-6148"},"institutions":[{"id":"https://openalex.org/I1304557061","display_name":"National Center for Toxicological Research","ror":"https://ror.org/05jmhh281","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I1320320070","display_name":"United States Food and Drug Administration","ror":"https://ror.org/034xvzb47","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Weida Tong","raw_affiliation_strings":["Center for Bioinformatics, Division of Systems Biology, National Center for Toxicological Research, US Food and Drug Administration, 3900 NCTR Road, Jefferson, AR, 72079, USA","Center for Bioinformatics, Division of Systems Biology, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Division of Systems Biology, National Center for Toxicological Research, US Food and Drug Administration, 3900 NCTR Road, Jefferson, AR, 72079, USA","institution_ids":["https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"raw_affiliation_string":"Center for Bioinformatics, Division of Systems Biology, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, USA","institution_ids":["https://openalex.org/I1304557061"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107791286","display_name":"Xiaowei Xu","orcid":"https://orcid.org/0000-0003-1543-009X"},"institutions":[{"id":"https://openalex.org/I102401767","display_name":"University of Arkansas at Little Rock","ror":"https://ror.org/04fttyv97","country_code":"US","type":"education","lineage":["https://openalex.org/I102401767"]},{"id":"https://openalex.org/I1304557061","display_name":"National Center for Toxicological Research","ror":"https://ror.org/05jmhh281","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I1320320070","display_name":"United States Food and Drug Administration","ror":"https://ror.org/034xvzb47","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xiaowei Xu","raw_affiliation_strings":["Center for Bioinformatics, Division of Systems Biology, National Center for Toxicological Research, US Food and Drug Administration, 3900 NCTR Road, Jefferson, AR, 72079, USA","Department of Information Science, University of Arkansas at Little Rock, 2801 S. University Ave., Little Rock, AR, 72204-1099, USA","Center for Bioinformatics, Division of Systems Biology, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, USA","Department of Information Science, University of Arkansas at Little Rock, Little Rock, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Division of Systems Biology, National Center for Toxicological Research, US Food and Drug Administration, 3900 NCTR Road, Jefferson, AR, 72079, USA","institution_ids":["https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"raw_affiliation_string":"Department of Information Science, University of Arkansas at Little Rock, 2801 S. University Ave., Little Rock, AR, 72204-1099, USA","institution_ids":["https://openalex.org/I102401767"]},{"raw_affiliation_string":"Center for Bioinformatics, Division of Systems Biology, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, USA","institution_ids":["https://openalex.org/I1304557061"]},{"raw_affiliation_string":"Department of Information Science, University of Arkansas at Little Rock, Little Rock, USA","institution_ids":["https://openalex.org/I102401767"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5068886380","https://openalex.org/A5107791286"],"corresponding_institution_ids":["https://openalex.org/I102401767","https://openalex.org/I1304557061","https://openalex.org/I1320320070"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.7299,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.83555262,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"12","issue":"S10","first_page":"S7","last_page":"S7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9038000106811523,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9038000106811523,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.06120000034570694,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.006599999964237213,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/modularity","display_name":"Modularity (biology)","score":0.7802621126174927},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6460793018341064},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6071232557296753},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5560290217399597},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.52016282081604},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4855725169181824},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.4689865708351135},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.4520662724971771},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.43323153257369995},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3724029064178467},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30210167169570923},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.26618364453315735},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.25618308782577515},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15986254811286926},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09687992930412292}],"concepts":[{"id":"https://openalex.org/C2779478453","wikidata":"https://www.wikidata.org/wiki/Q6889748","display_name":"Modularity (biology)","level":2,"score":0.7802621126174927},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6460793018341064},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6071232557296753},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5560290217399597},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.52016282081604},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4855725169181824},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.4689865708351135},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.4520662724971771},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.43323153257369995},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3724029064178467},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30210167169570923},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.26618364453315735},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.25618308782577515},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15986254811286926},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09687992930412292},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1186/1471-2105-12-s10-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s10-s7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S10-S7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22165958","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22165958","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:6073235bc95a47ff92f6312d79551538","is_oa":false,"landing_page_url":"https://doaj.org/article/6073235bc95a47ff92f6312d79551538","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss Suppl 10, p S7 (2011)","raw_type":"article"},{"id":"pmh:oai:ir.ipe.ac.cn:122111/11194","is_oa":true,"landing_page_url":"http://ir.ipe.ac.cn/handle/122111/11194","pdf_url":null,"source":{"id":"https://openalex.org/S4306400543","display_name":"CAS OpenIR (Chinese Academy of Sciences)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I19820366","host_organization_name":"Chinese Academy of Sciences","host_organization_lineage":["https://openalex.org/I19820366"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"\u4f1a\u8bae\u8bba\u6587"},{"id":"pmh:oai:ir.ipe.ac.cn:122111/24459","is_oa":false,"landing_page_url":"http://ir.ipe.ac.cn/handle/122111/24459","pdf_url":null,"source":{"id":"https://openalex.org/S4306400543","display_name":"CAS OpenIR (Chinese Academy of Sciences)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I19820366","host_organization_name":"Chinese Academy of Sciences","host_organization_lineage":["https://openalex.org/I19820366"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"\u671f\u520a\u8bba\u6587"},{"id":"pmh:oai:ir.ipe.ac.cn:122111/3813","is_oa":true,"landing_page_url":"http://ir.ipe.ac.cn/handle/122111/3813","pdf_url":null,"source":{"id":"https://openalex.org/S4306400543","display_name":"CAS OpenIR (Chinese Academy of Sciences)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I19820366","host_organization_name":"Chinese Academy of Sciences","host_organization_lineage":["https://openalex.org/I19820366"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:ir.ipe.ac.cn:122111/47765","is_oa":false,"landing_page_url":"http://ir.ipe.ac.cn/handle/122111/47765","pdf_url":null,"source":{"id":"https://openalex.org/S4306400543","display_name":"CAS OpenIR (Chinese Academy of Sciences)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I19820366","host_organization_name":"Chinese Academy of Sciences","host_organization_lineage":["https://openalex.org/I19820366"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"\u671f\u520a\u8bba\u6587"},{"id":"pmh:oai:pubmedcentral.nih.gov:3236850","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3236850","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-s10-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s10-s7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S10-S7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.5,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332163","display_name":"U.S. Food and Drug Administration","ror":"https://ror.org/034xvzb47"},{"id":"https://openalex.org/F4320332382","display_name":"Oak Ridge Institute for Science and Education","ror":"https://ror.org/0526p1y61"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1995528370.pdf","grobid_xml":"https://content.openalex.org/works/W1995528370.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W27394026","https://openalex.org/W1999895438","https://openalex.org/W2010890545","https://openalex.org/W2017138237","https://openalex.org/W2025399691","https://openalex.org/W2074986735","https://openalex.org/W2095293504","https://openalex.org/W2105325784","https://openalex.org/W2108022229","https://openalex.org/W2110620844","https://openalex.org/W2121470019","https://openalex.org/W2122863289","https://openalex.org/W2128366083","https://openalex.org/W2134008243","https://openalex.org/W2135098204","https://openalex.org/W2154947819","https://openalex.org/W2155320925","https://openalex.org/W2163485494","https://openalex.org/W2164298117","https://openalex.org/W2916767477","https://openalex.org/W2917375902"],"related_works":["https://openalex.org/W2390492032","https://openalex.org/W2120890012","https://openalex.org/W4387930971","https://openalex.org/W2769306272","https://openalex.org/W2901655697","https://openalex.org/W4252504573","https://openalex.org/W2101315668","https://openalex.org/W2155492529","https://openalex.org/W2300879143","https://openalex.org/W2023465156"],"abstract_inverted_index":{"BACKGROUND:":[0],"Protein-protein":[1],"interactions":[2,254,278],"(PPIs)":[3],"are":[4,36,43,256],"a":[5,51,65,92,107,133,182,300,315],"critical":[6],"component":[7],"for":[8,100,137,144,181,211,298,326],"many":[9,44],"underlying":[10],"biological":[11,153,239],"processes.":[12,41],"A":[13],"PPI":[14,45,70,78,98,103,170,192,262,281,302],"network":[15,147,171,205,243,273,303,335],"can":[16],"provide":[17],"insight":[18],"into":[19],"the":[20,28,40,149,176,186,189,216,224,228,266,295,320,332],"mechanisms":[21],"of":[22,121,178,188,196,234,253,276,279,317,334],"these":[23],"processes,":[24],"as":[25,27],"well":[26],"relationships":[29],"among":[30],"different":[31,115],"proteins":[32],"and":[33,67,86,152,163,238,313,337],"toxicants":[34],"that":[35,223,255,274,294,314],"potentially":[37],"involved":[38],"in":[39,232,258,331],"There":[42],"databases":[46,99,308,328],"publicly":[47],"available,":[48],"each":[49,145,203],"with":[50],"specific":[52],"focus.":[53],"The":[54,194,208,241,323],"challenge":[55],"is":[56,244,251],"how":[57],"to":[58,63,90,95,112,287],"effectively":[59],"combine":[60,96],"their":[61],"contents":[62],"generate":[64],"robust":[66,301],"biologically":[68],"relevant":[69],"network.":[71,104],"METHODS:":[72],"In":[73,264],"this":[74],"study,":[75],"seven":[76,114,191,280],"public":[77,307],"databases,":[79,282],"BioGRID,":[80],"DIP,":[81],"HPRD,":[82],"IntAct,":[83],"MINT,":[84],"REACTOME,":[85],"SPIKE,":[87],"were":[88,128,142],"used":[89],"explore":[91],"powerful":[93],"approach":[94,231,269],"multiple":[97,306],"an":[101,271],"integrated":[102,116,146,168,204,272],"We":[105,292],"developed":[106,324],"novel":[108],"method":[109,226,297],"called":[110],"k-votes":[111,225,296],"create":[113],"networks":[117],"by":[118,130,200,215,304],"using":[119,131,148],"values":[120],"k":[122,212,247],"ranging":[123],"from":[124,185,202],"1-7.":[125],"Functional":[126],"modules":[127,198],"mined":[129],"SCAN,":[132],"Structural":[134],"Clustering":[135],"Algorithm":[136],"Networks.":[138],"Overall":[139],"module":[140,218],"qualities":[141],"evaluated":[143],"following":[150],"statistical":[151,236],"measures:":[154],"(1)":[155],"modularity,":[156,159],"(2)":[157],"similarity-based":[158],"(3)":[160],"clustering":[161],"score,":[162],"(4)":[164],"enrichment.":[165],"RESULTS:":[166],"Each":[167],"human":[169],"was":[172,206,213],"constructed":[173],"based":[174],"on":[175],"number":[177],"votes":[179],"(k)":[180],"particular":[183],"interaction":[184],"committee":[187],"original":[190],"databases.":[193,263],"performance":[195],"functional":[197,217],"obtained":[199],"SCAN":[201],"evaluated.":[207],"optimal":[209],"value":[210,316],"determined":[214,293],"analysis.":[219],"Our":[220],"results":[221],"demonstrate":[222],"outperforms":[227,309],"traditional":[229,267],"union":[230,268],"terms":[233],"both":[235],"significance":[237],"meaning.":[240],"best":[242,321],"achieved":[245],"at":[246,259],"=":[248],"2,":[249],"which":[250,283],"composed":[252],"confirmed":[257],"least":[260],"two":[261],"contrast,":[265],"yields":[270],"consists":[275],"all":[277],"might":[284],"be":[285],"subject":[286],"high":[288],"false":[289],"positives.":[290],"CONCLUSIONS:":[291],"constructing":[299],"integrating":[305],"previously":[310],"reported":[311],"approaches":[312],"k=2":[318],"provides":[319],"results.":[322],"strategies":[325],"combining":[327],"show":[329],"promise":[330],"advancement":[333],"construction":[336],"modeling.":[338]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":4}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
