{"id":"https://openalex.org/W2126668277","doi":"https://doi.org/10.1186/1471-2105-12-s10-s20","title":"RefNetBuilder: a platform for construction of integrated reference gene regulatory networks from expressed sequence tags","display_name":"RefNetBuilder: a platform for construction of integrated reference gene regulatory networks from expressed sequence tags","publication_year":2011,"publication_date":"2011-10-18","ids":{"openalex":"https://openalex.org/W2126668277","doi":"https://doi.org/10.1186/1471-2105-12-s10-s20","mag":"2126668277","pmid":"https://pubmed.ncbi.nlm.nih.gov/22166047"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-s10-s20","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s10-s20","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S10-S20","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S10-S20","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100349375","display_name":"Ying Li","orcid":"https://orcid.org/0000-0001-5479-9119"},"institutions":[{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ying Li","raw_affiliation_strings":["School of Computing, University of Southern Mississippi, Hattiesburg, MS 39406, USA","School of Computing, University of Southern Mississippi, Hattiesburg, USA"],"affiliations":[{"raw_affiliation_string":"School of Computing, University of Southern Mississippi, Hattiesburg, MS 39406, USA","institution_ids":["https://openalex.org/I44854399"]},{"raw_affiliation_string":"School of Computing, University of Southern Mississippi, Hattiesburg, USA","institution_ids":["https://openalex.org/I44854399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019029265","display_name":"Ping Gong","orcid":"https://orcid.org/0000-0001-9910-7948"},"institutions":[{"id":"https://openalex.org/I4210149553","display_name":"Systems & Processes Engineering Corporation (United States)","ror":"https://ror.org/04gf4dd67","country_code":"US","type":"company","lineage":["https://openalex.org/I4210149553"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ping Gong","raw_affiliation_strings":["Environmental Services, SpecPro Inc., San Antonio, TX, 78216, USA","Environmental Services, SpecPro Inc., San Antonio, USA"],"affiliations":[{"raw_affiliation_string":"Environmental Services, SpecPro Inc., San Antonio, TX, 78216, USA","institution_ids":["https://openalex.org/I4210149553"]},{"raw_affiliation_string":"Environmental Services, SpecPro Inc., San Antonio, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075371599","display_name":"Edward J. Perkins","orcid":"https://orcid.org/0000-0003-1693-7714"},"institutions":[{"id":"https://openalex.org/I87303767","display_name":"U.S. Army Engineer Research and Development Center","ror":"https://ror.org/027mhn368","country_code":"US","type":"facility","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1306490931","https://openalex.org/I1330347796","https://openalex.org/I87303767"]},{"id":"https://openalex.org/I4210088792","display_name":"United States Army","ror":"https://ror.org/00afsp483","country_code":"US","type":"funder","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I4210088792"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edward J Perkins","raw_affiliation_strings":["Environmental Laboratory, U.S. Army Engineer Research and Development Center, Vicksburg, MS, 39180, USA","Environmental Laboratory, U. S. Army Engineer Research and Development Center, Vicksburg, USA"],"affiliations":[{"raw_affiliation_string":"Environmental Laboratory, U.S. Army Engineer Research and Development Center, Vicksburg, MS, 39180, USA","institution_ids":["https://openalex.org/I87303767","https://openalex.org/I4210088792"]},{"raw_affiliation_string":"Environmental Laboratory, U. S. Army Engineer Research and Development Center, Vicksburg, USA","institution_ids":["https://openalex.org/I87303767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100603445","display_name":"Chaoyang Zhang","orcid":"https://orcid.org/0000-0002-1221-0406"},"institutions":[{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chaoyang Zhang","raw_affiliation_strings":["School of Computing, University of Southern Mississippi, Hattiesburg, MS, 39406, USA","School of Computing, University of Southern Mississippi, Hattiesburg, USA"],"affiliations":[{"raw_affiliation_string":"School of Computing, University of Southern Mississippi, Hattiesburg, MS, 39406, USA","institution_ids":["https://openalex.org/I44854399"]},{"raw_affiliation_string":"School of Computing, University of Southern Mississippi, Hattiesburg, USA","institution_ids":["https://openalex.org/I44854399"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015377261","display_name":"Nan Wang","orcid":"https://orcid.org/0000-0002-7819-9000"},"institutions":[{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nan Wang","raw_affiliation_strings":["School of Computing, University of Southern Mississippi, Hattiesburg, MS, 39406, USA","School of Computing, University of Southern Mississippi, Hattiesburg, USA"],"affiliations":[{"raw_affiliation_string":"School of Computing, University of Southern Mississippi, Hattiesburg, MS, 39406, USA","institution_ids":["https://openalex.org/I44854399"]},{"raw_affiliation_string":"School of Computing, University of Southern Mississippi, Hattiesburg, USA","institution_ids":["https://openalex.org/I44854399"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100349375"],"corresponding_institution_ids":["https://openalex.org/I44854399"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.5336,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.66674682,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"12","issue":"S10","first_page":"S20","last_page":"S20"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.7798236608505249},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5802210569381714},{"id":"https://openalex.org/keywords/expressed-sequence-tag","display_name":"Expressed sequence tag","score":0.5728604793548584},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.55074542760849},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model organism","score":0.5387319922447205},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5303186774253845},{"id":"https://openalex.org/keywords/caenorhabditis-elegans","display_name":"Caenorhabditis elegans","score":0.4741857945919037},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4461562931537628},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4415069818496704},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4406540095806122},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4170284867286682},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.40800076723098755},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23311066627502441},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.20813962817192078},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.0785973072052002}],"concepts":[{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.7798236608505249},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5802210569381714},{"id":"https://openalex.org/C149034497","wikidata":"https://www.wikidata.org/wiki/Q1384835","display_name":"Expressed sequence tag","level":4,"score":0.5728604793548584},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.55074542760849},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.5387319922447205},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5303186774253845},{"id":"https://openalex.org/C2778944004","wikidata":"https://www.wikidata.org/wiki/Q91703","display_name":"Caenorhabditis elegans","level":3,"score":0.4741857945919037},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4461562931537628},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4415069818496704},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4406540095806122},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4170284867286682},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.40800076723098755},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23311066627502441},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.20813962817192078},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0785973072052002}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009835","descriptor_name":"Oligochaeta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009835","descriptor_name":"Oligochaeta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009835","descriptor_name":"Oligochaeta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-12-s10-s20","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s10-s20","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S10-S20","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22166047","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22166047","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:aquila.usm.edu:fac_pubs-1478","is_oa":false,"landing_page_url":"https://aquila.usm.edu/fac_pubs/479","pdf_url":null,"source":{"id":"https://openalex.org/S4306402529","display_name":"Aquila Digital Community (University of Southern Mississippi)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I44854399","host_organization_name":"University of Southern Mississippi","host_organization_lineage":["https://openalex.org/I44854399"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:ef4dd2537be24de29178d7a110542b30","is_oa":true,"landing_page_url":"https://doaj.org/article/ef4dd2537be24de29178d7a110542b30","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss Suppl 10, p S20 (2011)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3236843","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3236843","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-s10-s20","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s10-s20","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S10-S20","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2491623651","display_name":null,"funder_award_id":"903787","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2512333561","display_name":null,"funder_award_id":"0903787","funder_id":"https://openalex.org/F4320338283","funder_display_name":"Office of Experimental Program to Stimulate Competitive Research"},{"id":"https://openalex.org/G5411396108","display_name":null,"funder_award_id":"EPS-0903787","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6805318589","display_name":null,"funder_award_id":"0903787","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7314163092","display_name":null,"funder_award_id":"EPS-0903787","funder_id":"https://openalex.org/F4320338283","funder_display_name":"Office of Experimental Program to Stimulate Competitive Research"},{"id":"https://openalex.org/G8519232957","display_name":null,"funder_award_id":"W912HZ-08-2-0011","funder_id":"https://openalex.org/F4320337538","funder_display_name":"U.S. Army Corps of Engineers"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337538","display_name":"U.S. Army Corps of Engineers","ror":"https://ror.org/05w4e8v21"},{"id":"https://openalex.org/F4320338283","display_name":"Office of Experimental Program to Stimulate Competitive Research","ror":"https://ror.org/04k9mqs78"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2126668277.pdf","grobid_xml":"https://content.openalex.org/works/W2126668277.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W184793361","https://openalex.org/W2003516452","https://openalex.org/W2037442572","https://openalex.org/W2042187182","https://openalex.org/W2044525257","https://openalex.org/W2096766502","https://openalex.org/W2102057828","https://openalex.org/W2106552363","https://openalex.org/W2107249189","https://openalex.org/W2122863289","https://openalex.org/W2123280311","https://openalex.org/W2129269980","https://openalex.org/W2132992030","https://openalex.org/W2133579817","https://openalex.org/W2134609609","https://openalex.org/W2136988691","https://openalex.org/W2146341019","https://openalex.org/W2146384526","https://openalex.org/W2152869198","https://openalex.org/W2155331065","https://openalex.org/W2163296115","https://openalex.org/W2167222948","https://openalex.org/W2168399023","https://openalex.org/W2915108429","https://openalex.org/W2916767477","https://openalex.org/W3099289621"],"related_works":["https://openalex.org/W1964572291","https://openalex.org/W4387948744","https://openalex.org/W1987520879","https://openalex.org/W184793361","https://openalex.org/W2352732738","https://openalex.org/W2123060905","https://openalex.org/W2559588208","https://openalex.org/W4318778067","https://openalex.org/W1923384484","https://openalex.org/W1980728903"],"abstract_inverted_index":{"The":[0],"RefNetBuilder":[1,43],"provides":[2],"a":[3,14,26],"standalone":[4],"application":[5],"for":[6,10,31,35],"building":[7],"reference":[8],"GRNs":[9,34],"non-model":[11,36],"organisms":[12,37],"on":[13],"number":[15],"of":[16],"operating":[17],"system":[18],"platforms":[19],"with":[20],"standard":[21],"desktop":[22],"computer":[23],"hardware.":[24],"As":[25],"new":[27],"bioinformatic":[28],"tool":[29],"aimed":[30],"constructing":[32],"putative":[33],"that":[38],"have":[39],"only":[40],"ESTs":[41],"available,":[42],"is":[44],"especially":[45],"useful":[46],"to":[47],"explore":[48],"pathway-":[49],"or":[50],"network-related":[51],"information":[52],"in":[53],"these":[54],"organisms.":[55]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
