{"id":"https://openalex.org/W1976110041","doi":"https://doi.org/10.1186/1471-2105-12-s1-s51","title":"Semantically enabled and statistically supported biological hypothesis testing with tissue microarray databases","display_name":"Semantically enabled and statistically supported biological hypothesis testing with tissue microarray databases","publication_year":2011,"publication_date":"2011-02-15","ids":{"openalex":"https://openalex.org/W1976110041","doi":"https://doi.org/10.1186/1471-2105-12-s1-s51","mag":"1976110041","pmid":"https://pubmed.ncbi.nlm.nih.gov/21342584"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-s1-s51","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s1-s51","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S1-S51","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S1-S51","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103846395","display_name":"Young Soo Song","orcid":null},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I57664883","display_name":"Ajou University","ror":"https://ror.org/03tzb2h73","country_code":"KR","type":"education","lineage":["https://openalex.org/I57664883"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Young Soo Song","raw_affiliation_strings":["Department of Industrial & Information Systems Engineering, Ajou University, Suwon 443-749, Korea","Department of Industrial & Information Systems Engineering, Ajou University, Suwon, Korea","Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, Korea","Systems Biomedical Informatics Research Center, Seoul National University, Seoul, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Industrial & Information Systems Engineering, Ajou University, Suwon 443-749, Korea","institution_ids":["https://openalex.org/I57664883"]},{"raw_affiliation_string":"Department of Industrial & Information Systems Engineering, Ajou University, Suwon, Korea","institution_ids":["https://openalex.org/I57664883"]},{"raw_affiliation_string":"Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Systems Biomedical Informatics Research Center, Seoul National University, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100605856","display_name":"Chan Hee Park","orcid":"https://orcid.org/0000-0001-6894-521X"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Chan Hee Park","raw_affiliation_strings":["Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, 110-799, Korea","Systems Biomedical Informatics Research Center, Seoul National University, Seoul, 110799, Korea","Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, Korea","Systems Biomedical Informatics Research Center, Seoul National University, Seoul, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, 110-799, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Systems Biomedical Informatics Research Center, Seoul National University, Seoul, 110799, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Systems Biomedical Informatics Research Center, Seoul National University, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101198878","display_name":"Hee\u2010Joon Chung","orcid":null},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hee-Joon Chung","raw_affiliation_strings":["Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, 110-799, Korea","Systems Biomedical Informatics Research Center, Seoul National University, Seoul, 110799, Korea","Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, Korea","Systems Biomedical Informatics Research Center, Seoul National University, Seoul, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, 110-799, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Systems Biomedical Informatics Research Center, Seoul National University, Seoul, 110799, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Systems Biomedical Informatics Research Center, Seoul National University, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043830800","display_name":"Hyunjung Shin","orcid":"https://orcid.org/0000-0001-8347-8277"},"institutions":[{"id":"https://openalex.org/I57664883","display_name":"Ajou University","ror":"https://ror.org/03tzb2h73","country_code":"KR","type":"education","lineage":["https://openalex.org/I57664883"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hyunjung Shin","raw_affiliation_strings":["Department of Industrial & Information Systems Engineering, Ajou University, Suwon, 443-749, Korea","Department of Industrial and Information Systems Engineering, Ajou University, Suwon, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Industrial & Information Systems Engineering, Ajou University, Suwon, 443-749, Korea","institution_ids":["https://openalex.org/I57664883"]},{"raw_affiliation_string":"Department of Industrial and Information Systems Engineering, Ajou University, Suwon, Korea","institution_ids":["https://openalex.org/I57664883"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100444986","display_name":"Jihun Kim","orcid":"https://orcid.org/0000-0001-7822-6120"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Jihun Kim","raw_affiliation_strings":["Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, 110-799, Korea","Systems Biomedical Informatics Research Center, Seoul National University, Seoul, 110799, Korea","Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, Korea","Systems Biomedical Informatics Research Center, Seoul National University, Seoul, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, 110-799, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Systems Biomedical Informatics Research Center, Seoul National University, Seoul, 110799, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Systems Biomedical Informatics Research Center, Seoul National University, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101730979","display_name":"Ju Han Kim","orcid":"https://orcid.org/0000-0003-1522-9038"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jihun Kim","raw_affiliation_strings":["Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, 110-799, Korea","Systems Biomedical Informatics Research Center, Seoul National University, Seoul, 110799, Korea","Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, Korea","Systems Biomedical Informatics Research Center, Seoul National University, Seoul, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, 110-799, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Systems Biomedical Informatics Research Center, Seoul National University, Seoul, 110799, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Systems Biomedical Informatics Research Center, Seoul National University, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101730979","display_name":"Ju Han Kim","orcid":"https://orcid.org/0000-0003-1522-9038"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Ju Han Kim","raw_affiliation_strings":["Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, 110-799, Korea","Systems Biomedical Informatics Research Center, Seoul National University, Seoul, 110799, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, 110-799, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Systems Biomedical Informatics Research Center, Seoul National University, Seoul, 110799, Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101730979","display_name":"Ju Han Kim","orcid":"https://orcid.org/0000-0003-1522-9038"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Ju Han Kim","raw_affiliation_strings":["Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, 110-799, Korea","Systems Biomedical Informatics Research Center, Seoul National University, Seoul, 110799, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul, 110-799, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Systems Biomedical Informatics Research Center, Seoul National University, Seoul, 110799, Korea","institution_ids":["https://openalex.org/I139264467"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100444986","https://openalex.org/A5101730979"],"corresponding_institution_ids":["https://openalex.org/I139264467"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.1215,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.48140718,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"12","issue":"S1","first_page":"S51","last_page":"S51"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7370062470436096},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.710321843624115},{"id":"https://openalex.org/keywords/statistical-hypothesis-testing","display_name":"Statistical hypothesis testing","score":0.5787032842636108},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5456342101097107},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4453255236148834},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.43822798132896423},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4277368187904358},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3501134216785431},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.07371780276298523}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7370062470436096},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.710321843624115},{"id":"https://openalex.org/C87007009","wikidata":"https://www.wikidata.org/wiki/Q210832","display_name":"Statistical hypothesis testing","level":2,"score":0.5787032842636108},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5456342101097107},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4453255236148834},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.43822798132896423},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4277368187904358},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3501134216785431},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.07371780276298523},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D046228","descriptor_name":"Microarray Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D046228","descriptor_name":"Microarray Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D046228","descriptor_name":"Microarray Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-12-s1-s51","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s1-s51","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S1-S51","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21342584","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21342584","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3044309","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3044309","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-s1-s51","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s1-s51","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S1-S51","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1530201019","display_name":null,"funder_award_id":"2010-0028631","funder_id":"https://openalex.org/F4320320671","funder_display_name":"National Research Foundation"},{"id":"https://openalex.org/G4543011959","display_name":null,"funder_award_id":"2010-0028631","funder_id":"https://openalex.org/F4320322349","funder_display_name":"Ministry of Education, Science and Technology"},{"id":"https://openalex.org/G488116311","display_name":null,"funder_award_id":"2010-0028631","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320322349","display_name":"Ministry of Education, Science and Technology","ror":"https://ror.org/01p262204"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1976110041.pdf","grobid_xml":"https://content.openalex.org/works/W1976110041.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1544923801","https://openalex.org/W1578828259","https://openalex.org/W1974833742","https://openalex.org/W1986825223","https://openalex.org/W1998867359","https://openalex.org/W2025183726","https://openalex.org/W2036902495","https://openalex.org/W2045517493","https://openalex.org/W2079069607","https://openalex.org/W2085333314","https://openalex.org/W2106791611","https://openalex.org/W2106980948","https://openalex.org/W2108177663","https://openalex.org/W2117632114","https://openalex.org/W2117722273","https://openalex.org/W2126874393","https://openalex.org/W2127789342","https://openalex.org/W2155232871","https://openalex.org/W2165428180","https://openalex.org/W2170679339"],"related_works":["https://openalex.org/W137909637","https://openalex.org/W1013409931","https://openalex.org/W1526116433","https://openalex.org/W4285134125","https://openalex.org/W4360993400","https://openalex.org/W1994681357","https://openalex.org/W2095530000","https://openalex.org/W2159109398","https://openalex.org/W1692289893","https://openalex.org/W2363721000"],"abstract_inverted_index":{"BACKGROUND:":[0],"Although":[1],"many":[2,54],"biological":[3,11,195],"databases":[4,75],"are":[5,49],"applying":[6],"semantic":[7,77,113,128],"web":[8,78],"technologies,":[9],"meaningful":[10],"hypothesis":[12,22,97,152,159,196],"testing":[13,23,40,98],"cannot":[14],"be":[15,161,209],"easily":[16],"achieved.":[17],"Database-driven":[18],"high":[19,60,193],"throughput":[20,61,194],"genomic":[21],"requires":[24],"both":[25],"of":[26,29,36,92,115,130,192],"the":[27,42,90,93,110,116,127,131,139,144,158,181,190],"capabilities":[28],"obtaining":[30],"semantically":[31,50],"relevant":[32,38],"experimental":[33,165],"data":[34,48,102,166],"and":[35,52,72,105,112,133,155],"performing":[37,135,204],"statistical":[39,136],"for":[41,59,69,96,100],"retrieved":[43],"data.":[44],"Tissue":[45],"Microarray":[46],"(TMA)":[47],"rich":[51],"contains":[53],"biologically":[55],"important":[56],"hypotheses":[57,117,176,182],"waiting":[58],"conclusions.":[62],"METHODS:":[63],"An":[64],"application-specific":[65],"ontology":[66],"was":[67],"developed":[68],"managing":[70],"TMA":[71,101,120,164],"DNA":[73],"microarray":[74],"by":[76,107,143,185],"technologies.":[79],"Data":[80],"were":[81,103,183],"represented":[82],"as":[83,177],"Resource":[84],"Description":[85],"Framework":[86],"(RDF)":[87],"according":[88],"to":[89,125],"framework":[91],"ontology.":[94],"Applications":[95],"(Xperanto-RDF)":[99],"designed":[104],"implemented":[106],"(1)":[108],"formulating":[109,123],"syntactic":[111],"structures":[114,129],"derived":[118],"from":[119],"experiments,":[121],"(2)":[122],"SPARQLs":[124],"reflect":[126],"hypotheses,":[132],"(3)":[134],"test":[137],"with":[138],"result":[140],"sets":[141],"returned":[142],"SPARQLs.":[145],"RESULTS:":[146],"When":[147,170],"a":[148,151],"user":[149],"designs":[150],"in":[153,168],"Xperanto-RDF":[154],"submits":[156],"it,":[157],"can":[160,208],"tested":[162],"against":[163],"stored":[167],"Xperanto-RDF.":[169,186],"we":[171],"evaluated":[172],"four":[173],"previously":[174],"validated":[175],"an":[178],"illustration,":[179],"all":[180],"supported":[184],"CONCLUSIONS:":[187],"We":[188,198],"demonstrated":[189],"utility":[191],"testing.":[197],"believe":[199],"that":[200],"preliminary":[201],"investigation":[202],"before":[203],"highly":[205],"controlled":[206],"experiment":[207],"benefited.":[210]},"counts_by_year":[{"year":2016,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-08-16T07:02:28.622633","created_date":"2016-06-24T00:00:00"}
