{"id":"https://openalex.org/W2152233061","doi":"https://doi.org/10.1186/1471-2105-12-s1-s33","title":"iGEMDOCK: a graphical environment of enhancing GEMDOCK using pharmacological interactions and post-screening analysis","display_name":"iGEMDOCK: a graphical environment of enhancing GEMDOCK using pharmacological interactions and post-screening analysis","publication_year":2011,"publication_date":"2011-02-15","ids":{"openalex":"https://openalex.org/W2152233061","doi":"https://doi.org/10.1186/1471-2105-12-s1-s33","mag":"2152233061","pmid":"https://pubmed.ncbi.nlm.nih.gov/21342564"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-s1-s33","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s1-s33","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-12-S1-S33.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-12-S1-S33.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057602145","display_name":"Kai\u2010Cheng Hsu","orcid":"https://orcid.org/0000-0002-9022-6673"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Kai-Cheng Hsu","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 30050, Taiwan","Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]},{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080611128","display_name":"Yen\u2010Fu Chen","orcid":"https://orcid.org/0000-0002-9446-2761"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yen-Fu Chen","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084020299","display_name":"Shen-Rong Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Shen-Rong Lin","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088590993","display_name":"Jinn\u2010Moon Yang","orcid":"https://orcid.org/0000-0002-3205-4391"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Jinn-Moon Yang","raw_affiliation_strings":["Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsinchu, 30050, Taiwan","Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 30050, Taiwan","Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsinchu, 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]},{"raw_affiliation_string":"Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]},{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5088590993"],"corresponding_institution_ids":["https://openalex.org/I148366613"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":11.093,"has_fulltext":true,"cited_by_count":526,"citation_normalized_percentile":{"value":0.98949526,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"12","issue":"S1","first_page":"S33","last_page":"S33"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.8579999804496765,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.8579999804496765,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.029400000348687172,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12534","display_name":"Protein Degradation and Inhibitors","score":0.01940000057220459,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.8127187490463257},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6353510022163391},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.6080446243286133},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5084297060966492},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.4883832335472107},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.469363272190094},{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.41291409730911255},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3633457124233246},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.35118675231933594},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3443937301635742},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.29679179191589355},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24597877264022827},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.12332212924957275},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1121819019317627},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.09942808747291565}],"concepts":[{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.8127187490463257},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6353510022163391},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.6080446243286133},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5084297060966492},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.4883832335472107},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.469363272190094},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.41291409730911255},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3633457124233246},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.35118675231933594},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3443937301635742},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.29679179191589355},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24597877264022827},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.12332212924957275},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1121819019317627},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.09942808747291565},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-12-s1-s33","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s1-s33","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-12-S1-S33.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21342564","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21342564","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:d030e849601d41b9a5167ec1e9feeeae","is_oa":false,"landing_page_url":"https://doaj.org/article/d030e849601d41b9a5167ec1e9feeeae","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss Suppl 1, p S33 (2011)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3044289","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3044289","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-s1-s33","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s1-s33","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-12-S1-S33.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","display_name":"Life below water","score":0.5899999737739563}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"},{"id":"https://openalex.org/F4320321528","display_name":"Shanghai Educational Development Foundation","ror":"https://ror.org/0220qvk04"},{"id":"https://openalex.org/F4320322724","display_name":"Ministry of Education, India","ror":"https://ror.org/048xjjh50"},{"id":"https://openalex.org/F4320323443","display_name":"National Chiao Tung University","ror":"https://ror.org/00se2k293"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2152233061.pdf","grobid_xml":"https://content.openalex.org/works/W2152233061.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1971962180","https://openalex.org/W1975974159","https://openalex.org/W1986240377","https://openalex.org/W1996511390","https://openalex.org/W2001928335","https://openalex.org/W2003446299","https://openalex.org/W2004393548","https://openalex.org/W2007221144","https://openalex.org/W2012366500","https://openalex.org/W2018546792","https://openalex.org/W2026258231","https://openalex.org/W2037314290","https://openalex.org/W2040496005","https://openalex.org/W2045984575","https://openalex.org/W2047509756","https://openalex.org/W2050456292","https://openalex.org/W2051163038","https://openalex.org/W2065659249","https://openalex.org/W2073478593","https://openalex.org/W2097420030","https://openalex.org/W2099768013","https://openalex.org/W2101738855","https://openalex.org/W2102475066","https://openalex.org/W2103300124","https://openalex.org/W2107719670","https://openalex.org/W2111650618","https://openalex.org/W2114218027","https://openalex.org/W2125265960","https://openalex.org/W2126714395","https://openalex.org/W2138473864","https://openalex.org/W2139017313","https://openalex.org/W2147237151","https://openalex.org/W2150232801","https://openalex.org/W2157004511","https://openalex.org/W2159686118"],"related_works":["https://openalex.org/W4362464865","https://openalex.org/W2098840560","https://openalex.org/W4302604134","https://openalex.org/W2768880727","https://openalex.org/W2773493604","https://openalex.org/W2113146994","https://openalex.org/W2269591907","https://openalex.org/W2073081213","https://openalex.org/W2027065525","https://openalex.org/W2621548818"],"abstract_inverted_index":{"BACKGROUND:":[0],"Pharmacological":[1],"interactions":[2,15,71,108,123,153,217],"are":[3,16,157],"useful":[4,210,226],"for":[5,78,185,211,227],"understanding":[6,228],"ligand":[7,39,202,230],"binding":[8,131,231],"mechanisms":[9,232],"of":[10,22,46,118,142,172,182,198],"a":[11,20,143],"therapeutic":[12],"target.":[13],"These":[14],"often":[17,129,158],"inferred":[18],"from":[19,73,109,196,218],"set":[21],"active":[23,119],"compounds":[24,111,184],"that":[25,150,223],"were":[26],"acquired":[27],"experimentally.":[28],"Moreover,":[29],"most":[30],"docking":[31],"programs":[32],"loosely":[33],"coupled":[34],"the":[35,57,69,106,115,139,151,163,170,173,178,183,229],"stages":[36,65,91],"(binding-site":[37],"and":[38,43,66,177,201,214,233],"preparations,":[40],"virtual":[41,48],"screening,":[42],"post-screening":[44,95,98,186,205,212],"analysis)":[45],"structure-based":[47],"screening":[49,74,110,219],"(VS).":[50],"An":[51],"integrated":[52],"VS":[53,64,90],"environment,":[54,87],"which":[55,128],"provides":[56,101,169],"friendly":[58],"interface":[59],"to":[60,67,94,137,193],"seamlessly":[61],"combine":[62],"these":[63],"identify":[68],"pharmacological":[70,107,122,152,216],"directly":[72],"compounds,":[75],"is":[76,208,225,238],"valuable":[77],"drug":[79],"discovery.":[80],"RESULTS:":[81],"We":[82,189,221],"developed":[83,191],"an":[84],"easy-to-use":[85],"graphic":[86],"iGEMDOCK,":[88],"integrating":[89],"(from":[92],"preparations":[93,197],"analysis).":[96],"For":[97],"analysis,":[99],"iGEMDOCK":[100,156,168,192,207,224,237],"biological":[102,164],"insights":[103],"by":[104,155],"deriving":[105],"without":[112],"relying":[113],"on":[114],"experimental":[116,147],"data":[117],"compounds.":[120,220,236],"The":[121],"represent":[124],"conserved":[125],"interacting":[126],"residues,":[127],"form":[130],"pockets":[132],"with":[133],"specific":[134],"physico-chemical":[135],"properties,":[136],"play":[138],"essential":[140],"functions":[141],"target":[144,199],"protein.":[145],"Our":[146],"results":[148],"show":[149],"derived":[154],"hot":[159],"spots":[160],"involving":[161],"in":[162],"functions.":[165],"In":[166],"addition,":[167],"visualizations":[171],"protein-compound":[174],"interaction":[175],"profiles":[176],"hierarchical":[179],"clustering":[180],"dendrogram":[181],"analysis.":[187,206],"CONCLUSIONS:":[188],"have":[190],"facilitate":[194],"steps":[195],"proteins":[200],"libraries":[203],"toward":[204],"especially":[209],"analysis":[213],"inferring":[215],"believe":[222],"discovering":[234],"lead":[235],"available":[239],"at":[240],"http://gemdock.life.nctu.edu.tw/dock/igemdock.php.":[241]},"counts_by_year":[{"year":2026,"cited_by_count":12},{"year":2025,"cited_by_count":33},{"year":2024,"cited_by_count":61},{"year":2023,"cited_by_count":61},{"year":2022,"cited_by_count":65},{"year":2021,"cited_by_count":81},{"year":2020,"cited_by_count":68},{"year":2019,"cited_by_count":26},{"year":2018,"cited_by_count":21},{"year":2017,"cited_by_count":31},{"year":2016,"cited_by_count":20},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":19},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2025-10-10T00:00:00"}
