{"id":"https://openalex.org/W2155005819","doi":"https://doi.org/10.1186/1471-2105-12-s1-s26","title":"The choice of null distributions for detecting gene-gene interactions in genome-wide association studies","display_name":"The choice of null distributions for detecting gene-gene interactions in genome-wide association studies","publication_year":2011,"publication_date":"2011-02-15","ids":{"openalex":"https://openalex.org/W2155005819","doi":"https://doi.org/10.1186/1471-2105-12-s1-s26","mag":"2155005819","pmid":"https://pubmed.ncbi.nlm.nih.gov/21342556"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-s1-s26","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s1-s26","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S1-S26","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S1-S26","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029104097","display_name":"Can Yang","orcid":"https://orcid.org/0000-0002-4407-3055"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Can Yang","raw_affiliation_strings":["Department of Electronic and Computer Engineering, Hong Kong University of Science and Technology, Hong Kong. eeyang@ust.hk","Department of Electronic and Computer Engineering, Hong Kong University of Science and Technology, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic and Computer Engineering, Hong Kong University of Science and Technology, Hong Kong. eeyang@ust.hk","institution_ids":["https://openalex.org/I200769079"]},{"raw_affiliation_string":"Department of Electronic and Computer Engineering, Hong Kong University of Science and Technology, Hong Kong","institution_ids":["https://openalex.org/I200769079"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030367905","display_name":"Xiang Wan","orcid":"https://orcid.org/0000-0002-2324-6527"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Xiang Wan","raw_affiliation_strings":["Department of Electronic and Computer Engineering, Hong Kong University of Science and Technology, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic and Computer Engineering, Hong Kong University of Science and Technology, Hong Kong","institution_ids":["https://openalex.org/I200769079"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009588567","display_name":"Zengyou He","orcid":"https://orcid.org/0000-0001-9526-8816"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zengyou He","raw_affiliation_strings":["School of Software, Dalian University of Technology, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software, Dalian University of Technology, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100636286","display_name":"Qiang Yang","orcid":"https://orcid.org/0000-0001-5059-8360"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Qiang Yang","raw_affiliation_strings":["Department of Computer Science, Hong Kong University of Science and Technology, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Hong Kong University of Science and Technology, Hong Kong","institution_ids":["https://openalex.org/I200769079"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000743750","display_name":"Hong Xue","orcid":"https://orcid.org/0000-0002-8133-9828"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Hong Xue","raw_affiliation_strings":["Department of Biochemistry, Hong Kong University of Science and Technology, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Hong Kong University of Science and Technology, Hong Kong","institution_ids":["https://openalex.org/I200769079"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078798099","display_name":"Weichuan Yu","orcid":"https://orcid.org/0000-0002-5510-6916"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Weichuan Yu","raw_affiliation_strings":["Department of Electronic and Computer Engineering, Hong Kong University of Science and Technology, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic and Computer Engineering, Hong Kong University of Science and Technology, Hong Kong","institution_ids":["https://openalex.org/I200769079"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5029104097"],"corresponding_institution_ids":["https://openalex.org/I200769079"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.9261,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.77378033,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"12","issue":"S1","first_page":"S26","last_page":"S26"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9714999794960022,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9714999794960022,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.004100000020116568,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.0027000000700354576,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/null-distribution","display_name":"Null distribution","score":0.669797956943512},{"id":"https://openalex.org/keywords/genome-wide-association-study","display_name":"Genome-wide association study","score":0.6462291479110718},{"id":"https://openalex.org/keywords/null-hypothesis","display_name":"Null hypothesis","score":0.619519829750061},{"id":"https://openalex.org/keywords/multiple-comparisons-problem","display_name":"Multiple comparisons problem","score":0.5991363525390625},{"id":"https://openalex.org/keywords/null","display_name":"Null (SQL)","score":0.5843091607093811},{"id":"https://openalex.org/keywords/permutation","display_name":"Permutation (music)","score":0.5734943747520447},{"id":"https://openalex.org/keywords/false-discovery-rate","display_name":"False discovery rate","score":0.5658688545227051},{"id":"https://openalex.org/keywords/statistical-hypothesis-testing","display_name":"Statistical hypothesis testing","score":0.56292325258255},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5469730496406555},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.5070054531097412},{"id":"https://openalex.org/keywords/null-model","display_name":"Null model","score":0.4862455427646637},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4613596796989441},{"id":"https://openalex.org/keywords/genetic-association","display_name":"Genetic association","score":0.41797754168510437},{"id":"https://openalex.org/keywords/test-statistic","display_name":"Test statistic","score":0.41633403301239014},{"id":"https://openalex.org/keywords/statistical-power","display_name":"Statistical power","score":0.41582241654396057},{"id":"https://openalex.org/keywords/multifactor-dimensionality-reduction","display_name":"Multifactor dimensionality reduction","score":0.41456228494644165},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.41016367077827454},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40530461072921753},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3905491530895233},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.287609338760376},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26523447036743164},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.2574236989021301},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.23764988780021667},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17984628677368164},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.08633348345756531}],"concepts":[{"id":"https://openalex.org/C120639","wikidata":"https://www.wikidata.org/wiki/Q7068958","display_name":"Null distribution","level":4,"score":0.669797956943512},{"id":"https://openalex.org/C106208931","wikidata":"https://www.wikidata.org/wiki/Q1098876","display_name":"Genome-wide association study","level":5,"score":0.6462291479110718},{"id":"https://openalex.org/C191988596","wikidata":"https://www.wikidata.org/wiki/Q628374","display_name":"Null hypothesis","level":2,"score":0.619519829750061},{"id":"https://openalex.org/C183905921","wikidata":"https://www.wikidata.org/wiki/Q1038757","display_name":"Multiple comparisons problem","level":2,"score":0.5991363525390625},{"id":"https://openalex.org/C203763787","wikidata":"https://www.wikidata.org/wiki/Q371029","display_name":"Null (SQL)","level":2,"score":0.5843091607093811},{"id":"https://openalex.org/C21308566","wikidata":"https://www.wikidata.org/wiki/Q7169365","display_name":"Permutation (music)","level":2,"score":0.5734943747520447},{"id":"https://openalex.org/C193244246","wikidata":"https://www.wikidata.org/wiki/Q5432696","display_name":"False discovery rate","level":3,"score":0.5658688545227051},{"id":"https://openalex.org/C87007009","wikidata":"https://www.wikidata.org/wiki/Q210832","display_name":"Statistical hypothesis testing","level":2,"score":0.56292325258255},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5469730496406555},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.5070054531097412},{"id":"https://openalex.org/C36382193","wikidata":"https://www.wikidata.org/wiki/Q7068966","display_name":"Null model","level":2,"score":0.4862455427646637},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4613596796989441},{"id":"https://openalex.org/C186413461","wikidata":"https://www.wikidata.org/wiki/Q744727","display_name":"Genetic association","level":5,"score":0.41797754168510437},{"id":"https://openalex.org/C169857963","wikidata":"https://www.wikidata.org/wiki/Q1461038","display_name":"Test statistic","level":3,"score":0.41633403301239014},{"id":"https://openalex.org/C96608239","wikidata":"https://www.wikidata.org/wiki/Q1199823","display_name":"Statistical power","level":2,"score":0.41582241654396057},{"id":"https://openalex.org/C25249476","wikidata":"https://www.wikidata.org/wiki/Q6934678","display_name":"Multifactor dimensionality reduction","level":5,"score":0.41456228494644165},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.41016367077827454},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40530461072921753},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3905491530895233},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.287609338760376},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26523447036743164},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.2574236989021301},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.23764988780021667},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17984628677368164},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.08633348345756531},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008268","descriptor_name":"Macular Degeneration","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008268","descriptor_name":"Macular Degeneration","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008268","descriptor_name":"Macular Degeneration","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008268","descriptor_name":"Macular Degeneration","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058011","descriptor_name":"Multifactor Dimensionality Reduction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058011","descriptor_name":"Multifactor Dimensionality Reduction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058011","descriptor_name":"Multifactor Dimensionality Reduction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058011","descriptor_name":"Multifactor Dimensionality Reduction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-12-s1-s26","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s1-s26","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S1-S26","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21342556","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21342556","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3044281","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3044281","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.hkust.edu.hk:1783.1-39167","is_oa":false,"landing_page_url":"http://repository.hkust.edu.hk/ir/Record/1783.1-39167","pdf_url":null,"source":{"id":"https://openalex.org/S4306401796","display_name":"Rare & Special e-Zone (The Hong Kong University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200769079","host_organization_name":"Hong Kong University of Science and Technology","host_organization_lineage":["https://openalex.org/I200769079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-s1-s26","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s1-s26","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S1-S26","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6872926605","display_name":null,"funder_award_id":"DUT10ZD110","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323537","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2155005819.pdf","grobid_xml":"https://content.openalex.org/works/W2155005819.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1532551225","https://openalex.org/W1542966809","https://openalex.org/W1543479204","https://openalex.org/W1554944419","https://openalex.org/W1583700199","https://openalex.org/W1808644423","https://openalex.org/W1822695366","https://openalex.org/W1824047490","https://openalex.org/W1965138864","https://openalex.org/W1980175560","https://openalex.org/W1981723690","https://openalex.org/W2016389876","https://openalex.org/W2024105897","https://openalex.org/W2041170649","https://openalex.org/W2043192290","https://openalex.org/W2050063758","https://openalex.org/W2063575312","https://openalex.org/W2076334156","https://openalex.org/W2090713084","https://openalex.org/W2094189284","https://openalex.org/W2100934875","https://openalex.org/W2100941248","https://openalex.org/W2110065044","https://openalex.org/W2113784410","https://openalex.org/W2119862467","https://openalex.org/W2122189635","https://openalex.org/W2129961269","https://openalex.org/W2134783591","https://openalex.org/W2135046866","https://openalex.org/W2152905639","https://openalex.org/W2154572047","https://openalex.org/W2155781289","https://openalex.org/W2157355630","https://openalex.org/W2161630867","https://openalex.org/W2161633633","https://openalex.org/W2167638767","https://openalex.org/W2169294950","https://openalex.org/W2170133641","https://openalex.org/W2171778797","https://openalex.org/W2787894218","https://openalex.org/W2797583072","https://openalex.org/W2912467488","https://openalex.org/W3014310718","https://openalex.org/W4249303080"],"related_works":["https://openalex.org/W4293336298","https://openalex.org/W2467227750","https://openalex.org/W2093104131","https://openalex.org/W2178204436","https://openalex.org/W4300887971","https://openalex.org/W2143079975","https://openalex.org/W2333750400","https://openalex.org/W2950531074","https://openalex.org/W2563586581","https://openalex.org/W3016295776"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1,46,68,96,113,154],"genome-wide":[2],"association":[3],"studies":[4],"(GWAS),":[5],"the":[6,43,47,60,69,82,92,97,100,103,127,132,147,165,174,177,192,198,230],"number":[7],"of":[8,31,33,84,102,176,180],"single-nucleotide":[9],"polymorphisms":[10],"(SNPs)":[11],"typically":[12],"ranges":[13],"between":[14],"500,000":[15],"and":[16,91,143,164,209],"1,000,000.":[17],"Accordingly,":[18],"detecting":[19],"gene-gene":[20],"interactions":[21],"in":[22,125,151,240,248],"GWAS":[23],"is":[24,107,135,140],"computationally":[25],"challenging":[26],"because":[27,141],"it":[28],"involves":[29],"hundreds":[30],"billions":[32],"SNP":[34,62],"pairs.":[35],"Stage-wise":[36],"strategies":[37],"are":[38,56,79],"often":[39],"used":[40,150],"to":[41,58,64,81,86,172,190],"overcome":[42],"computational":[44],"difficulty.":[45],"first":[48],"stage,":[49,71,99],"fast":[50],"screening":[51,142,162],"methods":[52,74,163],"(e.g.":[53],"Tuning":[54],"ReliefF)":[55],"applied":[57,80],"reduce":[59],"whole":[61],"set":[63,215,233],"a":[65,210],"small":[66],"subset.":[67],"second":[70],"sophisticated":[72],"modeling":[73,144,167],"(e.g.,":[75],"multifactor-dimensionality":[76],"reduction":[77],"(MDR))":[78],"subset":[83],"SNPs":[85],"identify":[87],"interesting":[88],"interaction":[89,94,105],"models":[90],"corresponding":[93],"patterns.":[95],"third":[98],"significance":[101],"identified":[104],"patterns":[106],"evaluated":[108],"by":[109],"hypothesis":[110,152,241],"testing.":[111,153],"RESULTS:":[112],"this":[114,119],"paper,":[115],"we":[116,158,188],"show":[117,173],"that":[118],"stage-wise":[120],"strategy":[121],"could":[122],"be":[123],"problematic":[124],"controlling":[126],"false":[128],"positive":[129],"rate":[130],"if":[131],"null":[133,148,181,186,238],"distribution":[134,149],"not":[136],"appropriately":[137],"chosen.":[138],"This":[139],"may":[145],"change":[146],"our":[155],"simulation":[156],"study,":[157],"use":[159,191],"some":[160],"popular":[161,166],"method":[168],"MDR":[169],"as":[170],"examples":[171],"effect":[175],"inappropriate":[178],"choice":[179],"distributions.":[182],"To":[183],"choose":[184],"appropriate":[185,237],"distributions,":[187],"suggest":[189],"permutation":[193,225],"test":[194,226],"or":[195,227],"testing":[196,228],"on":[197,229],"independent":[199,231],"data":[200,208,214,232],"set.":[201],"We":[202],"demonstrate":[203],"their":[204],"performance":[205],"using":[206],"synthetic":[207],"real":[211],"genome":[212],"wide":[213],"from":[216],"an":[217],"Aged-related":[218],"Macular":[219],"Degeneration":[220],"(AMD)":[221],"study.":[222],"CONCLUSIONS:":[223],"The":[224],"can":[234],"help":[235],"choosing":[236],"distributions":[239],"testing,":[242],"which":[243],"provides":[244],"more":[245],"reliable":[246],"results":[247],"practice.":[249]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
