{"id":"https://openalex.org/W1973868085","doi":"https://doi.org/10.1186/1471-2105-12-s1-s10","title":"Gene-gene interaction filtering with ensemble of filters","display_name":"Gene-gene interaction filtering with ensemble of filters","publication_year":2011,"publication_date":"2011-02-15","ids":{"openalex":"https://openalex.org/W1973868085","doi":"https://doi.org/10.1186/1471-2105-12-s1-s10","mag":"1973868085","pmid":"https://pubmed.ncbi.nlm.nih.gov/21342539"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-s1-s10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s1-s10","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S1-S10","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S1-S10","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114375167","display_name":"Pengyi Yang","orcid":"https://orcid.org/0000-0003-1098-3138"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Pengyi Yang","raw_affiliation_strings":["School of Information Technologies, University of Sydney, NSW 2006, Australia. yangpy@it.usyd.edu.au","School of Mathematics and Statistics, University of Sydney, , Australia"],"affiliations":[{"raw_affiliation_string":"School of Information Technologies, University of Sydney, NSW 2006, Australia. yangpy@it.usyd.edu.au","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"School of Mathematics and Statistics, University of Sydney, , Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028008500","display_name":"Joshua W. K. Ho","orcid":"https://orcid.org/0000-0003-2331-7011"},"institutions":[{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Joshua WK Ho","raw_affiliation_strings":["National ICT Australia, Australian Technology Park, Eveleigh, NSW, 2015, Australia","School of Information Technologies, University of Sydney, NSW, 2006, Australia","School of Information Technologies, University of Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"National ICT Australia, Australian Technology Park, Eveleigh, NSW, 2015, Australia","institution_ids":["https://openalex.org/I42894916"]},{"raw_affiliation_string":"School of Information Technologies, University of Sydney, NSW, 2006, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"School of Information Technologies, University of Sydney, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028524705","display_name":"Jean Yang","orcid":"https://orcid.org/0000-0002-5271-2603"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Yee Hwa Yang","raw_affiliation_strings":["School of Mathematics and Statistics, University of Sydney, NSW, 2006, Australia","School of Mathematics & Statistics, University of Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistics, University of Sydney, NSW, 2006, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"School of Mathematics & Statistics, University of Sydney, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018899175","display_name":"Bing Bing Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Bing B Zhou","raw_affiliation_strings":["Centre for Distributed and High Performance Computing, University of Sydney, NSW, 2006, Australia","School of Information Technologies, University of Sydney, NSW, 2006, Australia","School of Information Technologies, University of Sydney, , Australia"],"affiliations":[{"raw_affiliation_string":"Centre for Distributed and High Performance Computing, University of Sydney, NSW, 2006, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"School of Information Technologies, University of Sydney, NSW, 2006, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"School of Information Technologies, University of Sydney, , Australia","institution_ids":["https://openalex.org/I129604602"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5114375167"],"corresponding_institution_ids":["https://openalex.org/I129604602"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.001,"has_fulltext":true,"cited_by_count":52,"citation_normalized_percentile":{"value":0.85872387,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"12","issue":"S1","first_page":"S10","last_page":"S10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7086908221244812},{"id":"https://openalex.org/keywords/ensemble-learning","display_name":"Ensemble learning","score":0.5482656359672546},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.5342506766319275},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.5330124497413635},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4639878273010254},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.45202916860580444},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4519994258880615},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.43317413330078125},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3680199086666107},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3675708770751953}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7086908221244812},{"id":"https://openalex.org/C45942800","wikidata":"https://www.wikidata.org/wiki/Q245652","display_name":"Ensemble learning","level":2,"score":0.5482656359672546},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.5342506766319275},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.5330124497413635},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4639878273010254},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.45202916860580444},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4519994258880615},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43317413330078125},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3680199086666107},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3675708770751953},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-12-s1-s10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s1-s10","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S1-S10","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21342539","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21342539","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:c05762dd456f4ba5a52bd897c2d3253a","is_oa":true,"landing_page_url":"https://doaj.org/article/c05762dd456f4ba5a52bd897c2d3253a","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss Suppl 1, p S10 (2011)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3044264","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3044264","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-s1-s10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-s1-s10","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-S1-S10","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3344392026","display_name":"Statistical methods and tools for integrative microarray analysis","funder_award_id":"DP0770395","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G611870384","display_name":null,"funder_award_id":"grant","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G6194240451","display_name":"National ICT Australia","funder_award_id":"NICTA","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"}],"funders":[{"id":"https://openalex.org/F4320322065","display_name":"National IT Industry Promotion Agency","ror":"https://ror.org/026v53e29"},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1973868085.pdf","grobid_xml":"https://content.openalex.org/works/W1973868085.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1500895378","https://openalex.org/W1532551225","https://openalex.org/W1534477342","https://openalex.org/W1560801430","https://openalex.org/W1566603517","https://openalex.org/W1989531990","https://openalex.org/W2009969871","https://openalex.org/W2014125258","https://openalex.org/W2028197440","https://openalex.org/W2041170649","https://openalex.org/W2050063758","https://openalex.org/W2052182252","https://openalex.org/W2063575312","https://openalex.org/W2068403353","https://openalex.org/W2079861715","https://openalex.org/W2086099578","https://openalex.org/W2091093620","https://openalex.org/W2094189284","https://openalex.org/W2102109283","https://openalex.org/W2113784410","https://openalex.org/W2115629999","https://openalex.org/W2117004913","https://openalex.org/W2130856032","https://openalex.org/W2131878646","https://openalex.org/W2134783591","https://openalex.org/W2134874218","https://openalex.org/W2152905639","https://openalex.org/W2170133641","https://openalex.org/W2171800571","https://openalex.org/W2172182886","https://openalex.org/W2525203296"],"related_works":["https://openalex.org/W4376643315","https://openalex.org/W4324137541","https://openalex.org/W2900445707","https://openalex.org/W4285741730","https://openalex.org/W1191482210","https://openalex.org/W4285046548","https://openalex.org/W4210302090","https://openalex.org/W3092276832","https://openalex.org/W3111529524","https://openalex.org/W4375951447"],"abstract_inverted_index":{"We":[0],"propose":[1],"a":[2,52,79],"simple":[3],"and":[4,35,42,50,61,72,110],"effective":[5],"ensemble":[6,27,30,69,74,91],"approach":[7],"in":[8,99,114],"which":[9],"the":[10,23,33,68,73,86,90,95],"results":[11],"from":[12],"multiple":[13],"runs":[14],"of":[15,26,32,56,70,75,92,116],"an":[16],"unstable":[17],"filter":[18],"are":[19,44],"aggregated":[20],"based":[21],"on":[22],"general":[24],"theory":[25],"learning.":[28],"The":[29],"versions":[31],"ReliefF":[34,71],"TuRF":[36,76,93],"algorithms,":[37],"referred":[38],"to":[39,46,101],"as":[40,105,107],"ReliefF-E":[41],"TuRF-E,":[43],"robust":[45],"sample":[47],"order":[48],"dependency":[49],"enable":[51],"more":[53,81],"informative":[54],"investigation":[55],"data":[57],"characteristics.":[58],"Using":[59],"simulated":[60],"real":[62],"datasets,":[63],"we":[64],"demonstrate":[65],"that":[66],"both":[67],"can":[77],"generate":[78],"much":[80],"stable":[82],"SNP":[83],"ranking":[84],"than":[85],"original":[87],"algorithms.":[88],"Furthermore,":[89],"achieved":[94],"highest":[96],"success":[97],"rate":[98],"comparison":[100],"many":[102],"state-of-the-art":[103],"algorithms":[104],"well":[106],"traditional":[108],"\u03c72-test":[109],"odds":[111],"ratio":[112],"methods":[113],"terms":[115],"retaining":[117],"gene-gene":[118],"interactions.":[119]},"counts_by_year":[{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":6},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
