{"id":"https://openalex.org/W2004389753","doi":"https://doi.org/10.1186/1471-2105-12-98","title":"CDAO-Store: Ontology-driven Data Integration for Phylogenetic Analysis","display_name":"CDAO-Store: Ontology-driven Data Integration for Phylogenetic Analysis","publication_year":2011,"publication_date":"2011-04-15","ids":{"openalex":"https://openalex.org/W2004389753","doi":"https://doi.org/10.1186/1471-2105-12-98","mag":"2004389753","pmid":"https://pubmed.ncbi.nlm.nih.gov/21496247"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-98","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-98","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-98","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-98","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085709392","display_name":"Brandon Chisham","orcid":null},"institutions":[{"id":"https://openalex.org/I10052268","display_name":"New Mexico State University","ror":"https://ror.org/00hpz7z43","country_code":"US","type":"education","lineage":["https://openalex.org/I10052268"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brandon Chisham","raw_affiliation_strings":["Department of Computer Science, New Mexico State University, Las Cruces, USA","Department of Computer Science, New Mexico State University, Las Cruces, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Mexico State University, Las Cruces, USA","institution_ids":["https://openalex.org/I10052268"]},{"raw_affiliation_string":"Department of Computer Science, New Mexico State University, Las Cruces, USA#TAB#","institution_ids":["https://openalex.org/I10052268"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108504059","display_name":"Ben Wright","orcid":null},"institutions":[{"id":"https://openalex.org/I10052268","display_name":"New Mexico State University","ror":"https://ror.org/00hpz7z43","country_code":"US","type":"education","lineage":["https://openalex.org/I10052268"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ben Wright","raw_affiliation_strings":["Department of Computer Science, New Mexico State University, Las Cruces, New Mexico, USA","Department of Computer Science, New Mexico State University, Las Cruces, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Mexico State University, Las Cruces, New Mexico, USA","institution_ids":["https://openalex.org/I10052268"]},{"raw_affiliation_string":"Department of Computer Science, New Mexico State University, Las Cruces, USA#TAB#","institution_ids":["https://openalex.org/I10052268"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103134401","display_name":"Trung Le","orcid":"https://orcid.org/0000-0003-2271-7486"},"institutions":[{"id":"https://openalex.org/I10052268","display_name":"New Mexico State University","ror":"https://ror.org/00hpz7z43","country_code":"US","type":"education","lineage":["https://openalex.org/I10052268"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Trung Le","raw_affiliation_strings":["Department of Computer Science, New Mexico State University, Las Cruces, New Mexico, USA","Department of Computer Science, New Mexico State University, Las Cruces, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Mexico State University, Las Cruces, New Mexico, USA","institution_ids":["https://openalex.org/I10052268"]},{"raw_affiliation_string":"Department of Computer Science, New Mexico State University, Las Cruces, USA#TAB#","institution_ids":["https://openalex.org/I10052268"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063459912","display_name":"Tran Cao Son","orcid":"https://orcid.org/0000-0003-3689-8433"},"institutions":[{"id":"https://openalex.org/I10052268","display_name":"New Mexico State University","ror":"https://ror.org/00hpz7z43","country_code":"US","type":"education","lineage":["https://openalex.org/I10052268"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tran Cao Son","raw_affiliation_strings":["Department of Computer Science, New Mexico State University, Las Cruces, New Mexico, USA","Department of Computer Science, New Mexico State University, Las Cruces, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Mexico State University, Las Cruces, New Mexico, USA","institution_ids":["https://openalex.org/I10052268"]},{"raw_affiliation_string":"Department of Computer Science, New Mexico State University, Las Cruces, USA#TAB#","institution_ids":["https://openalex.org/I10052268"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024528910","display_name":"Enrico Pontelli","orcid":"https://orcid.org/0000-0002-7753-1737"},"institutions":[{"id":"https://openalex.org/I10052268","display_name":"New Mexico State University","ror":"https://ror.org/00hpz7z43","country_code":"US","type":"education","lineage":["https://openalex.org/I10052268"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Enrico Pontelli","raw_affiliation_strings":["Department of Computer Science, New Mexico State University, Las Cruces, New Mexico, USA","Department of Computer Science, New Mexico State University, Las Cruces, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Mexico State University, Las Cruces, New Mexico, USA","institution_ids":["https://openalex.org/I10052268"]},{"raw_affiliation_string":"Department of Computer Science, New Mexico State University, Las Cruces, USA#TAB#","institution_ids":["https://openalex.org/I10052268"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5024528910"],"corresponding_institution_ids":["https://openalex.org/I10052268"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2790},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2790},"fwci":0.6082,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.65107814,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"12","issue":"1","first_page":"98","last_page":"98"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6761999726295471,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6761999726295471,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.08969999849796295,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.028699999675154686,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7649610638618469},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.680415689945221},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5446247458457947},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5081863403320312},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.49302002787590027},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4598875939846039},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.446415513753891},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.40100520849227905},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35815703868865967},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11321982741355896},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10792842507362366}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7649610638618469},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.680415689945221},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5446247458457947},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5081863403320312},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.49302002787590027},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4598875939846039},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.446415513753891},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.40100520849227905},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35815703868865967},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11321982741355896},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10792842507362366},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-12-98","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-98","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-98","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21496247","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21496247","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:a8e4ec8197e249cdbb31d982dec6c778","is_oa":true,"landing_page_url":"https://doaj.org/article/a8e4ec8197e249cdbb31d982dec6c778","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 98 (2011)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2108386","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3101187","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-98","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-98","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-98","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4000000059604645}],"awards":[{"id":"https://openalex.org/G2535442764","display_name":"IGERT: Computational Molecular Biology Training Group","funder_award_id":"0504304","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4209356199","display_name":"CREST: Center for Research Excellence in Bioinformatics and Computational Biology","funder_award_id":"0420407","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4508212883","display_name":null,"funder_award_id":"HRD-0420407","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309855","display_name":"National Evolutionary Synthesis Center","ror":"https://ror.org/001ykb961"},{"id":"https://openalex.org/F4320338075","display_name":"Core Research for Evolutional Science and Technology","ror":"https://ror.org/00097mb19"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2004389753.pdf","grobid_xml":"https://content.openalex.org/works/W2004389753.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W15074213","https://openalex.org/W1546639740","https://openalex.org/W1577783107","https://openalex.org/W1662296157","https://openalex.org/W1673404489","https://openalex.org/W1937151504","https://openalex.org/W1995945562","https://openalex.org/W2001291669","https://openalex.org/W2023578426","https://openalex.org/W2091770942","https://openalex.org/W2100412820","https://openalex.org/W2107091012","https://openalex.org/W2108980486","https://openalex.org/W2110899053","https://openalex.org/W2132247062","https://openalex.org/W2134415959","https://openalex.org/W2139436782","https://openalex.org/W2142008033","https://openalex.org/W2154425539","https://openalex.org/W2242459625","https://openalex.org/W2399721281","https://openalex.org/W3199943451","https://openalex.org/W4229723960"],"related_works":["https://openalex.org/W4312203868","https://openalex.org/W2069013776","https://openalex.org/W2038264393","https://openalex.org/W2059637021","https://openalex.org/W2003333417","https://openalex.org/W2362218761","https://openalex.org/W2113708670","https://openalex.org/W2062354928","https://openalex.org/W2088120817","https://openalex.org/W2158340599"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,42,229],"Comparative":[2],"Data":[3],"Analysis":[4],"Ontology":[5],"(CDAO)":[6],"is":[7,73,195,217,233],"an":[8],"ontology":[9,47],"developed,":[10],"as":[11,62,105,107],"part":[12],"of":[13,30,39,45,51,77,84,94,168,198,204,213,222],"the":[14,21,37,46,49,63,92,125,159,166,172,191,211,218],"EvoInfo":[15],"and":[16,32,54,97,155,179,185,201],"EvoIO":[17],"groups":[18],"supported":[19],"by":[20,127],"National":[22],"Evolutionary":[23],"Synthesis":[24],"Center,":[25],"to":[26,101,149,171,190,206,231],"provide":[27],"semantic":[28,64],"descriptions":[29],"data":[31,57,153,170,224],"transformations":[33],"commonly":[34],"found":[35],"in":[36,91,124,175],"domain":[38],"phylogenetic":[40,52,78,208,223],"analysis.":[41,209],"core":[43],"concepts":[44],"enable":[48],"description":[50],"trees":[53,123,156],"associated":[55],"character":[56,152],"matrices.":[58],"RESULTS:":[59],"Using":[60],"CDAO":[61,187],"back-end,":[65],"we":[66],"developed":[67],"a":[68,74,81,88,98,140,199],"triple-store,":[69],"named":[70],"CDAO-Store.":[71,160],"CDAO-Store":[72,86,138,161,194,216,232],"RDF-based":[75],"store":[76,126],"data,":[79],"including":[80],"complete":[82],"import":[83,163],"TreeBASE.":[85],"provides":[87,139,162],"programmatic":[89],"interface,":[90],"form":[93],"web":[95],"services,":[96],"web-based":[99],"front-end,":[100,142],"perform":[102],"both":[103,151],"user-defined":[104],"well":[106],"domain-specific":[108,110,226],"queries;":[109],"queries":[111],"include":[112],"search":[113],"for":[114],"nearest":[115],"common":[116],"ancestors,":[117],"minimum":[118],"spanning":[119],"clades,":[120],"filter":[121],"multiple":[122],"size,":[128],"author,":[129],"taxa,":[130],"tree":[131],"identifier,":[132],"algorithm":[133],"or":[134],"method.":[135],"In":[136],"addition,":[137],"visualization":[141],"called":[143],"CDAO-Explorer,":[144],"which":[145],"can":[146,182],"be":[147,183],"used":[148],"view":[150],"matrices":[154],"extracted":[157],"from":[158],"capabilities,":[164],"enabling":[165],"addition":[167],"new":[169],"triple-store;":[173],"files":[174],"PHYLIP,":[176],"MEGA,":[177],"nexml,":[178],"NEXUS":[180],"formats":[181],"imported":[184],"their":[186],"representations":[188],"added":[189],"triple-store.":[192],"CONCLUSIONS:":[193],"made":[196],"up":[197],"versatile":[200],"integrated":[202],"set":[203],"tools":[205],"support":[207],"To":[210],"best":[212],"our":[214],"knowledge,":[215],"first":[219],"semantically-aware":[220],"repository":[221],"with":[225],"querying":[227],"capabilities.":[228],"portal":[230],"available":[234],"at":[235],"http://www.cs.nmsu.edu/~cdaostore.":[236]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
