{"id":"https://openalex.org/W2116745900","doi":"https://doi.org/10.1186/1471-2105-12-488","title":"Graph based fusion of miRNA and mRNA expression data improves clinical outcome prediction in prostate cancer","display_name":"Graph based fusion of miRNA and mRNA expression data improves clinical outcome prediction in prostate cancer","publication_year":2011,"publication_date":"2011-12-01","ids":{"openalex":"https://openalex.org/W2116745900","doi":"https://doi.org/10.1186/1471-2105-12-488","mag":"2116745900","pmid":"https://pubmed.ncbi.nlm.nih.gov/22188670"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-488","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-488","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-488","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-488","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108990617","display_name":"Stephan Gade","orcid":null},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Stephan Gade","raw_affiliation_strings":["German Cancer Research Center, Cancer Genome Research, Im Neuenheimer Feld 460, 69120 Heidelberg, Germany. s.gade@dkfz-heidelberg.de","German Cancer Research Center, Cancer Genome Research, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"German Cancer Research Center, Cancer Genome Research, Im Neuenheimer Feld 460, 69120 Heidelberg, Germany. s.gade@dkfz-heidelberg.de","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Research Center, Cancer Genome Research, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046066862","display_name":"Christine Porzelius","orcid":null},"institutions":[{"id":"https://openalex.org/I2801240073","display_name":"University Medical Center Freiburg","ror":"https://ror.org/03vzbgh69","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2801240073"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christine Porzelius","raw_affiliation_strings":["Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, 79104, Freiburg, Germany","Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Freiburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, 79104, Freiburg, Germany","institution_ids":["https://openalex.org/I2801240073"]},{"raw_affiliation_string":"Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Freiburg, Germany","institution_ids":["https://openalex.org/I2801240073"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080752508","display_name":"Maria F\u00e4lth","orcid":null},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Maria F\u00e4lth","raw_affiliation_strings":["German Cancer Research Center, Cancer Genome Research, Im Neuenheimer Feld 460, 69120, Heidelberg, Germany","German Cancer Research Center, Cancer Genome Research, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"German Cancer Research Center, Cancer Genome Research, Im Neuenheimer Feld 460, 69120, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Research Center, Cancer Genome Research, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018616517","display_name":"Jan C. Brase","orcid":"https://orcid.org/0000-0002-1325-2528"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jan C Brase","raw_affiliation_strings":["German Cancer Research Center, Cancer Genome Research, Im Neuenheimer Feld 460, 69120, Heidelberg, Germany","German Cancer Research Center, Cancer Genome Research, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"German Cancer Research Center, Cancer Genome Research, Im Neuenheimer Feld 460, 69120, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Research Center, Cancer Genome Research, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023870399","display_name":"Daniela Wuttig","orcid":null},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniela Wuttig","raw_affiliation_strings":["German Cancer Research Center, Cancer Genome Research, Im Neuenheimer Feld 460, 69120, Heidelberg, Germany","German Cancer Research Center, Cancer Genome Research, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"German Cancer Research Center, Cancer Genome Research, Im Neuenheimer Feld 460, 69120, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Research Center, Cancer Genome Research, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066647108","display_name":"Ruprecht Kuner","orcid":null},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ruprecht Kuner","raw_affiliation_strings":["German Cancer Research Center, Cancer Genome Research, Im Neuenheimer Feld 460, 69120, Heidelberg, Germany","German Cancer Research Center, Cancer Genome Research, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"German Cancer Research Center, Cancer Genome Research, Im Neuenheimer Feld 460, 69120, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Research Center, Cancer Genome Research, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011534196","display_name":"Harald Binder","orcid":"https://orcid.org/0000-0002-5666-8662"},"institutions":[{"id":"https://openalex.org/I169724904","display_name":"Zimmer Biomet (Netherlands)","ror":"https://ror.org/034k8cv93","country_code":"NL","type":"company","lineage":["https://openalex.org/I169724904","https://openalex.org/I4210115238"]},{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I2801240073","display_name":"University Medical Center Freiburg","ror":"https://ror.org/03vzbgh69","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2801240073"]},{"id":"https://openalex.org/I4210094062","display_name":"University Medical Center of the Johannes Gutenberg University Mainz","ror":"https://ror.org/00q1fsf04","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210094062"]}],"countries":["DE","NL"],"is_corresponding":false,"raw_author_name":"Harald Binder","raw_affiliation_strings":["Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, 79104, Freiburg, Germany","Institute of Medical Biometry, Epidemiology and Informatics (IMBEI), Working Group Medical Biometry, University Medical Center Johannes Gutenberg University Mainz, 55101, Mainz, Germany","Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Freiburg, Germany","Institute of Medical Biometry, Epidemiology and Informatics (IMBEI), Working Group Medical Biometry, University Medical Center Johannes Gutenberg University Mainz, Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, 79104, Freiburg, Germany","institution_ids":["https://openalex.org/I2801240073"]},{"raw_affiliation_string":"Institute of Medical Biometry, Epidemiology and Informatics (IMBEI), Working Group Medical Biometry, University Medical Center Johannes Gutenberg University Mainz, 55101, Mainz, Germany","institution_ids":["https://openalex.org/I169724904","https://openalex.org/I4210094062","https://openalex.org/I197323543"]},{"raw_affiliation_string":"Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Freiburg, Germany","institution_ids":["https://openalex.org/I2801240073"]},{"raw_affiliation_string":"Institute of Medical Biometry, Epidemiology and Informatics (IMBEI), Working Group Medical Biometry, University Medical Center Johannes Gutenberg University Mainz, Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025249874","display_name":"Holger S\u00fcltmann","orcid":"https://orcid.org/0000-0002-5257-8600"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Holger S\u00fcltmann","raw_affiliation_strings":["German Cancer Research Center, Cancer Genome Research, Im Neuenheimer Feld 460, 69120, Heidelberg, Germany","German Cancer Research Center, Cancer Genome Research, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"German Cancer Research Center, Cancer Genome Research, Im Neuenheimer Feld 460, 69120, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Research Center, Cancer Genome Research, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017944645","display_name":"Tim Bei\u00dfbarth","orcid":"https://orcid.org/0000-0001-6509-2143"},"institutions":[{"id":"https://openalex.org/I4210116730","display_name":"Universit\u00e4tsmedizin G\u00f6ttingen","ror":"https://ror.org/021ft0n22","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210116730"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Tim Bei\u00dfbarth","raw_affiliation_strings":["Medical Statistics, University Medical Center G\u00f6ttingen, 37099, G\u00f6ttingen, Germany","Medical Statistics, University Medical Center G\u00f6ttingen, G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Statistics, University Medical Center G\u00f6ttingen, 37099, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I4210116730"]},{"raw_affiliation_string":"Medical Statistics, University Medical Center G\u00f6ttingen, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I4210116730"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5017944645","https://openalex.org/A5108990617"],"corresponding_institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210116730"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.9504,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.862525,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"12","issue":"1","first_page":"488","last_page":"488"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.7351999878883362,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.7351999878883362,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.05429999902844429,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.028200000524520874,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.5809511542320251},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5330599546432495},{"id":"https://openalex.org/keywords/prostate-cancer","display_name":"Prostate cancer","score":0.5259592533111572},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.47466233372688293},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47314488887786865},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4150211215019226},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3984903395175934},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3599092662334442},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35959339141845703},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3525981307029724},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3051399886608124},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2948812246322632},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17978355288505554},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12195590138435364}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.5809511542320251},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5330599546432495},{"id":"https://openalex.org/C2780192828","wikidata":"https://www.wikidata.org/wiki/Q181257","display_name":"Prostate cancer","level":3,"score":0.5259592533111572},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.47466233372688293},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47314488887786865},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4150211215019226},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3984903395175934},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3599092662334442},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35959339141845703},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3525981307029724},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3051399886608124},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2948812246322632},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17978355288505554},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12195590138435364}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018570","descriptor_name":"Risk Assessment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018570","descriptor_name":"Risk Assessment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018570","descriptor_name":"Risk Assessment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018570","descriptor_name":"Risk Assessment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-12-488","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-488","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-488","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22188670","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22188670","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:bcfc31728764443cbd23586459828901","is_oa":false,"landing_page_url":"https://doaj.org/article/bcfc31728764443cbd23586459828901","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 488 (2011)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2468451","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3471479","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:goescholar:1/7597","is_oa":true,"landing_page_url":"http://resolver.sub.uni-goettingen.de/purl?gs-1/7597","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journalArticle"},{"id":"pmh:oai:publications.goettingen-research-online.de:2/21309","is_oa":true,"landing_page_url":"https://resolver.sub.uni-goettingen.de/purl?gro-2/21309","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal_article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-488","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-488","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-488","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.46000000834465027}],"awards":[{"id":"https://openalex.org/G2894434351","display_name":null,"funder_award_id":"01GS0890","funder_id":"https://openalex.org/F4320325391","funder_display_name":"Federalno Ministarstvo Obrazovanja i Nauke"}],"funders":[{"id":"https://openalex.org/F4320310693","display_name":"Deutsches Krebsforschungszentrum","ror":"https://ror.org/04cdgtt98"},{"id":"https://openalex.org/F4320318756","display_name":"Universit\u00e4tsmedizin G\u00f6ttingen","ror":"https://ror.org/021ft0n22"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320322301","display_name":"Johannes Gutenberg-Universit\u00e4t Mainz","ror":"https://ror.org/023b0x485"},{"id":"https://openalex.org/F4320325391","display_name":"Federalno Ministarstvo Obrazovanja i Nauke","ror":"https://ror.org/0355d0s55"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2116745900.pdf","grobid_xml":"https://content.openalex.org/works/W2116745900.grobid-xml"},"referenced_works_count":81,"referenced_works":["https://openalex.org/W410897752","https://openalex.org/W830005325","https://openalex.org/W1533335653","https://openalex.org/W1546952499","https://openalex.org/W1554944419","https://openalex.org/W1580788756","https://openalex.org/W1906461790","https://openalex.org/W1968630106","https://openalex.org/W1979300931","https://openalex.org/W1986546598","https://openalex.org/W1989160450","https://openalex.org/W1989590372","https://openalex.org/W1990072751","https://openalex.org/W2000491596","https://openalex.org/W2004005279","https://openalex.org/W2006253576","https://openalex.org/W2008945738","https://openalex.org/W2013783925","https://openalex.org/W2021733365","https://openalex.org/W2022667041","https://openalex.org/W2024046085","https://openalex.org/W2025266808","https://openalex.org/W2026570544","https://openalex.org/W2028868106","https://openalex.org/W2034280056","https://openalex.org/W2036224487","https://openalex.org/W2039656279","https://openalex.org/W2040615655","https://openalex.org/W2050869737","https://openalex.org/W2052074020","https://openalex.org/W2052196460","https://openalex.org/W2052825782","https://openalex.org/W2068241138","https://openalex.org/W2070571588","https://openalex.org/W2073116379","https://openalex.org/W2073404525","https://openalex.org/W2095619968","https://openalex.org/W2099234024","https://openalex.org/W2099607215","https://openalex.org/W2105632406","https://openalex.org/W2105882193","https://openalex.org/W2106787323","https://openalex.org/W2106831595","https://openalex.org/W2107239547","https://openalex.org/W2107633226","https://openalex.org/W2109972881","https://openalex.org/W2110065044","https://openalex.org/W2112021759","https://openalex.org/W2112076978","https://openalex.org/W2116100742","https://openalex.org/W2116224763","https://openalex.org/W2117923417","https://openalex.org/W2118352309","https://openalex.org/W2119862467","https://openalex.org/W2120456037","https://openalex.org/W2120865735","https://openalex.org/W2127314075","https://openalex.org/W2128985829","https://openalex.org/W2130979840","https://openalex.org/W2134955300","https://openalex.org/W2135046866","https://openalex.org/W2136340483","https://openalex.org/W2139792080","https://openalex.org/W2149199519","https://openalex.org/W2149298154","https://openalex.org/W2154947819","https://openalex.org/W2156909104","https://openalex.org/W2163563958","https://openalex.org/W2911964244","https://openalex.org/W3099478002","https://openalex.org/W3147894994","https://openalex.org/W4205597722","https://openalex.org/W4230674625","https://openalex.org/W4241876622","https://openalex.org/W4245024447","https://openalex.org/W4250236131","https://openalex.org/W4253628963","https://openalex.org/W4253934678","https://openalex.org/W4293241248","https://openalex.org/W4399576652","https://openalex.org/W6630345745"],"related_works":["https://openalex.org/W2115093090","https://openalex.org/W2076984982","https://openalex.org/W2047434558","https://openalex.org/W2144261578","https://openalex.org/W1551232230","https://openalex.org/W2008557144","https://openalex.org/W2073764144","https://openalex.org/W2396105383","https://openalex.org/W2118558281","https://openalex.org/W3009964329"],"abstract_inverted_index":{"BACKGROUND:":[0],"One":[1],"of":[2,24,78,103,142,235,241,257,268],"the":[3,75,86,118,146,153,163,175,182,217,233,236,269,275],"main":[4],"goals":[5],"in":[6,34,57,109,178,220,255,274],"cancer":[7,35,191],"studies":[8,80],"including":[9],"high-throughput":[10],"microRNA":[11],"(miRNA)":[12],"and":[13,19,30,45,55,83,130,167,200,243,260],"mRNA":[14,29,67,82,131,201,242],"data":[15,104,132,192,224,246],"is":[16,91,186,272],"to":[17,39,64,97,111,127,157,173,180],"find":[18,112],"assess":[20],"prognostic":[21],"signatures":[22,70],"capable":[23],"predicting":[25],"clinical":[26,41,210,252],"outcome.":[27],"Both":[28],"miRNA":[31,48,69,84,129,199,244],"expression":[32,202,245],"changes":[33],"diseases":[36],"are":[37,62,139],"described":[38],"reflect":[40],"characteristics":[42],"like":[43],"staging":[44],"prognosis.":[46],"Furthermore,":[47],"abundance":[49],"can":[50],"directly":[51],"affect":[52],"target":[53,154],"transcripts":[54],"translation":[56],"tumor":[58],"cells.":[59],"Prediction":[60],"models":[61],"trained":[63],"identify":[65],"either":[66],"or":[68,99],"for":[71,94],"patient":[72,88,196],"stratification.":[73],"With":[74],"increasing":[76],"number":[77],"microarray":[79],"collecting":[81],"from":[85],"same":[87],"cohort":[89],"there":[90],"a":[92,113,124,159,189],"need":[93],"statistical":[95],"methods":[96],"integrate":[98],"fuse":[100,128],"both":[101,223],"kinds":[102],"into":[105,133,247],"one":[106,134,248],"prediction":[107,135,155,228,249,254,258],"model":[108,250],"order":[110,179],"combined":[114],"signature":[115],"that":[116,216],"improves":[117,251],"prediction.":[119,183],"RESULTS:":[120],"Here,":[121],"we":[122,144],"propose":[123],"new":[125],"method":[126,185,271],"model.":[136],"Since":[137],"miRNAs":[138,166],"known":[140],"regulators":[141],"mRNAs":[143],"used":[145,172,208],"correlations":[147],"between":[148,165],"them":[149],"as":[150,152,209,230,232],"well":[151,231],"information":[156],"build":[158],"bipartite":[160,218],"graph":[161,170,219],"representing":[162],"relations":[164],"mRNAs.":[168],"This":[169],"was":[171,207],"guide":[174],"feature":[176,237,262],"selection":[177],"improve":[181,227],"The":[184,204,264],"illustrated":[187],"on":[188],"prostate":[190],"set":[193],"comprising":[194],"98":[195],"samples":[197],"with":[198,222],"data.":[203],"biochemical":[205],"relapse":[206],"endpoint.":[211],"It":[212],"could":[213,226],"be":[214],"shown":[215],"combination":[221],"sets":[225],"performance":[229],"stability":[234],"selection.":[238,263],"CONCLUSIONS:":[239],"Fusion":[240],"outcome":[253],"terms":[256],"error":[259],"stable":[261],"R":[265],"source":[266],"code":[267],"proposed":[270],"available":[273],"supplement.":[276]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":5}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
