{"id":"https://openalex.org/W1967642442","doi":"https://doi.org/10.1186/1471-2105-12-456","title":"Unintended consequences of existential quantifications in biomedical ontologies","display_name":"Unintended consequences of existential quantifications in biomedical ontologies","publication_year":2011,"publication_date":"2011-11-24","ids":{"openalex":"https://openalex.org/W1967642442","doi":"https://doi.org/10.1186/1471-2105-12-456","mag":"1967642442","pmid":"https://pubmed.ncbi.nlm.nih.gov/22115278"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-456","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-456","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-456","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-456","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039035898","display_name":"Martin Boeker","orcid":"https://orcid.org/0000-0003-2972-2042"},"institutions":[{"id":"https://openalex.org/I2801240073","display_name":"University Medical Center Freiburg","ror":"https://ror.org/03vzbgh69","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2801240073"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Martin Boeker","raw_affiliation_strings":["Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Freiburg, Germany. martin.boeker@uniklinik-freiburg.de","Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, , Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Freiburg, Germany. martin.boeker@uniklinik-freiburg.de","institution_ids":["https://openalex.org/I2801240073"]},{"raw_affiliation_string":"Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, , Germany","institution_ids":["https://openalex.org/I2801240073"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036109045","display_name":"Ilinca Tudose","orcid":"https://orcid.org/0000-0003-1995-5985"},"institutions":[{"id":"https://openalex.org/I2801240073","display_name":"University Medical Center Freiburg","ror":"https://ror.org/03vzbgh69","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2801240073"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ilinca Tudose","raw_affiliation_strings":["Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Germany","Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, , Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Germany","institution_ids":["https://openalex.org/I2801240073"]},{"raw_affiliation_string":"Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, , Germany","institution_ids":["https://openalex.org/I2801240073"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044072805","display_name":"Janna Hastings","orcid":"https://orcid.org/0000-0002-3469-4923"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Janna Hastings","raw_affiliation_strings":["Chemoinformatics and Metabolism, European Bioinformatics Institute, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"Chemoinformatics and Metabolism, European Bioinformatics Institute, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049157539","display_name":"Daniel Schober","orcid":"https://orcid.org/0000-0001-8014-6648"},"institutions":[{"id":"https://openalex.org/I2801240073","display_name":"University Medical Center Freiburg","ror":"https://ror.org/03vzbgh69","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2801240073"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel Schober","raw_affiliation_strings":["Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Germany","Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, , Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Germany","institution_ids":["https://openalex.org/I2801240073"]},{"raw_affiliation_string":"Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, , Germany","institution_ids":["https://openalex.org/I2801240073"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101773732","display_name":"Stefan Schulz","orcid":"https://orcid.org/0000-0001-7222-3287"},"institutions":[{"id":"https://openalex.org/I2801240073","display_name":"University Medical Center Freiburg","ror":"https://ror.org/03vzbgh69","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2801240073"]},{"id":"https://openalex.org/I15766117","display_name":"University of Graz","ror":"https://ror.org/01faaaf77","country_code":"AT","type":"education","lineage":["https://openalex.org/I15766117"]},{"id":"https://openalex.org/I202276237","display_name":"Medical University of Graz","ror":"https://ror.org/02n0bts35","country_code":"AT","type":"education","lineage":["https://openalex.org/I202276237"]}],"countries":["AT","DE"],"is_corresponding":false,"raw_author_name":"Stefan Schulz","raw_affiliation_strings":["Institute for Medical Informatics, Statistics and Documentation, Medical University of Graz, Austria","Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Germany","Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, , Germany","Institute for Medical Informatics, Statistics and Documentation, Medical University of Graz, , Austria"],"affiliations":[{"raw_affiliation_string":"Institute for Medical Informatics, Statistics and Documentation, Medical University of Graz, Austria","institution_ids":["https://openalex.org/I202276237"]},{"raw_affiliation_string":"Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Germany","institution_ids":["https://openalex.org/I2801240073"]},{"raw_affiliation_string":"Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, , Germany","institution_ids":["https://openalex.org/I2801240073"]},{"raw_affiliation_string":"Institute for Medical Informatics, Statistics and Documentation, Medical University of Graz, , Austria","institution_ids":["https://openalex.org/I15766117"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5039035898"],"corresponding_institution_ids":["https://openalex.org/I2801240073"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1385,"currency":"EUR","value_usd":1493},"fwci":1.334,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.78859407,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"12","issue":"1","first_page":"456","last_page":"456"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7807782888412476},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.7354325652122498},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7280137538909912},{"id":"https://openalex.org/keywords/web-ontology-language","display_name":"Web Ontology Language","score":0.6028488874435425},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5163825750350952},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.4956110715866089},{"id":"https://openalex.org/keywords/ontology-components","display_name":"Ontology components","score":0.4868716299533844},{"id":"https://openalex.org/keywords/semantic-web-rule-language","display_name":"Semantic Web Rule Language","score":0.4231472313404083},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.41486528515815735},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3700488805770874},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.36442387104034424},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3442550599575043},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3356819152832031},{"id":"https://openalex.org/keywords/owl-s","display_name":"OWL-S","score":0.3206324577331543},{"id":"https://openalex.org/keywords/social-semantic-web","display_name":"Social Semantic Web","score":0.2118476927280426},{"id":"https://openalex.org/keywords/semantic-analytics","display_name":"Semantic analytics","score":0.18777337670326233},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17181667685508728},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.10420513153076172},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09547305107116699}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7807782888412476},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.7354325652122498},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7280137538909912},{"id":"https://openalex.org/C101230327","wikidata":"https://www.wikidata.org/wiki/Q826165","display_name":"Web Ontology Language","level":3,"score":0.6028488874435425},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5163825750350952},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.4956110715866089},{"id":"https://openalex.org/C154210476","wikidata":"https://www.wikidata.org/wiki/Q7095057","display_name":"Ontology components","level":5,"score":0.4868716299533844},{"id":"https://openalex.org/C71695816","wikidata":"https://www.wikidata.org/wiki/Q3478367","display_name":"Semantic Web Rule Language","level":5,"score":0.4231472313404083},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.41486528515815735},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3700488805770874},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.36442387104034424},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3442550599575043},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3356819152832031},{"id":"https://openalex.org/C50382505","wikidata":"https://www.wikidata.org/wiki/Q2553356","display_name":"OWL-S","level":4,"score":0.3206324577331543},{"id":"https://openalex.org/C534406577","wikidata":"https://www.wikidata.org/wiki/Q7550843","display_name":"Social Semantic Web","level":3,"score":0.2118476927280426},{"id":"https://openalex.org/C148792806","wikidata":"https://www.wikidata.org/wiki/Q7449046","display_name":"Semantic analytics","level":4,"score":0.18777337670326233},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17181667685508728},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.10420513153076172},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09547305107116699},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000715","descriptor_name":"Anatomy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000715","descriptor_name":"Anatomy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000715","descriptor_name":"Anatomy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014981","descriptor_name":"Xenopus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014981","descriptor_name":"Xenopus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014981","descriptor_name":"Xenopus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-12-456","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-456","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-456","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22115278","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22115278","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:15cd4cc4309e465f84fcd54b612dcb98","is_oa":true,"landing_page_url":"https://doaj.org/article/15cd4cc4309e465f84fcd54b612dcb98","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 456 (2011)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2290693","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3280341","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:freidok.uni-freiburg.de:11840","is_oa":false,"landing_page_url":"https://freidok.uni-freiburg.de/data/11840","pdf_url":null,"source":{"id":"https://openalex.org/S4306401057","display_name":"FreiDok plus (Universit\u00e4tsbibliothek Freiburg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I161046081","host_organization_name":"University of Freiburg","host_organization_lineage":["https://openalex.org/I161046081"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics. 12 (2011), 456, DOI 10.1186/1471-2105-12-456, issn: 1471-2105","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-456","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-456","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-456","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5106512922","display_name":null,"funder_award_id":"Deutsche Forschungsgemeinschaft (DFG","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6024419964","display_name":null,"funder_award_id":"Deutsche Forschungsgemeinschaft (DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6052429835","display_name":null,"funder_award_id":"(DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1967642442.pdf","grobid_xml":"https://content.openalex.org/works/W1967642442.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W6183789","https://openalex.org/W72872960","https://openalex.org/W110386102","https://openalex.org/W1555563750","https://openalex.org/W1884111252","https://openalex.org/W1990890881","https://openalex.org/W2025399691","https://openalex.org/W2037789405","https://openalex.org/W2054470867","https://openalex.org/W2100490186","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2110183893","https://openalex.org/W2111701123","https://openalex.org/W2113142309","https://openalex.org/W2121939662","https://openalex.org/W2134418889","https://openalex.org/W2136961946","https://openalex.org/W2137999759","https://openalex.org/W2144573571","https://openalex.org/W2156023721","https://openalex.org/W2156622158","https://openalex.org/W2162385209","https://openalex.org/W2165570175","https://openalex.org/W2170610499","https://openalex.org/W2540149843","https://openalex.org/W4210765383","https://openalex.org/W4239696231","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2475889485","https://openalex.org/W1582258607","https://openalex.org/W2127110834","https://openalex.org/W2414527572","https://openalex.org/W4298913204","https://openalex.org/W200971","https://openalex.org/W17926982","https://openalex.org/W1970301183","https://openalex.org/W2401209741","https://openalex.org/W32608275"],"abstract_inverted_index":{"The":[0,30],"current":[1],"OWL":[2],"releases":[3],"of":[4],"OBO":[5],"Foundry":[6,8],"(and":[7],"candidate)":[9],"ontologies":[10,38],"contain":[11],"numerous":[12],"assertions":[13],"which":[14],"do":[15],"not":[16],"properly":[17],"describe":[18],"the":[19],"underlying":[20],"biological":[21],"reality,":[22],"or":[23],"are":[24],"ambiguous":[25],"and":[26,39,52],"difficult":[27],"to":[28,42],"interpret.":[29],"solution":[31],"is":[32],"a":[33,40],"better":[34],"anchoring":[35],"in":[36],"upper":[37],"restriction":[41],"relatively":[43],"few,":[44],"well":[45],"defined":[46],"relation":[47],"types":[48],"with":[49],"given":[50],"domain":[51],"range":[53],"constraints.":[54]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":6}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
