{"id":"https://openalex.org/W2050263604","doi":"https://doi.org/10.1186/1471-2105-12-435","title":"PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries","display_name":"PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries","publication_year":2011,"publication_date":"2011-11-09","ids":{"openalex":"https://openalex.org/W2050263604","doi":"https://doi.org/10.1186/1471-2105-12-435","mag":"2050263604","pmid":"https://pubmed.ncbi.nlm.nih.gov/22070195"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-435","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-435","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-435","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-435","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063632942","display_name":"Adriano Barbosa-Silva","orcid":"https://orcid.org/0000-0002-5260-2607"},"institutions":[{"id":"https://openalex.org/I205582932","display_name":"Max Delbr\u00fcck Center","ror":"https://ror.org/04p5ggc03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I205582932"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Adriano Barbosa-Silva","raw_affiliation_strings":["Computational Biology and Data Mining Group, Max Delbr\u00fcck Center for Molecular Medicine, Robert-R\u00f6ssle-Strasse, 10, D-13125, Berlin, Germany. adriano.barbosa@mdc-berlin.de","Computational Biology and Data Mining Group, Max Delbr\u00fcck Center for Molecular Medicine., Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology and Data Mining Group, Max Delbr\u00fcck Center for Molecular Medicine, Robert-R\u00f6ssle-Strasse, 10, D-13125, Berlin, Germany. adriano.barbosa@mdc-berlin.de","institution_ids":["https://openalex.org/I205582932"]},{"raw_affiliation_string":"Computational Biology and Data Mining Group, Max Delbr\u00fcck Center for Molecular Medicine., Berlin, Germany","institution_ids":["https://openalex.org/I205582932"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055724941","display_name":"Jean\u2212Fred Fontaine","orcid":"https://orcid.org/0000-0002-1101-4091"},"institutions":[{"id":"https://openalex.org/I205582932","display_name":"Max Delbr\u00fcck Center","ror":"https://ror.org/04p5ggc03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I205582932"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jean-Fred Fontaine","raw_affiliation_strings":["Computational Biology and Data Mining Group, Max Delbr\u00fcck Center for Molecular Medicine., Robert-R\u00f6ssle-Strasse. 10, D-13125, Berlin, Germany","Computational Biology and Data Mining Group, Max Delbr\u00fcck Center for Molecular Medicine., Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology and Data Mining Group, Max Delbr\u00fcck Center for Molecular Medicine., Robert-R\u00f6ssle-Strasse. 10, D-13125, Berlin, Germany","institution_ids":["https://openalex.org/I205582932"]},{"raw_affiliation_string":"Computational Biology and Data Mining Group, Max Delbr\u00fcck Center for Molecular Medicine., Berlin, Germany","institution_ids":["https://openalex.org/I205582932"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059970061","display_name":"Elisa Donnard","orcid":"https://orcid.org/0000-0002-8834-8110"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]},{"id":"https://openalex.org/I196064397","display_name":"Ludwig Cancer Research","ror":"https://ror.org/05923xh51","country_code":"BE","type":"nonprofit","lineage":["https://openalex.org/I196064397","https://openalex.org/I4210150094"]},{"id":"https://openalex.org/I4210130541","display_name":"Instituto Paulo Gontijo","ror":"https://ror.org/03h8wyx14","country_code":"BR","type":"nonprofit","lineage":["https://openalex.org/I4210130541"]}],"countries":["BE","BR"],"is_corresponding":false,"raw_author_name":"Elisa R Donnard","raw_affiliation_strings":["Laborat\u00f3rio de Biodados, Dpto. de Bioqu\u00edmica e Imunologia, ICB - UFMG., 31270-901, Belo Horizonte, MG, Brazil","S\u00e3o Paulo Branch, Ludwig Institute for Cancer Research, 01323-903, S\u00e3o Paulo, SP, Brazil","Laborat\u00f3rio de Biodados, Dpto. de Bioqu\u00edmica e Imunologia, ICB - UFMG., Belo Horizonte, Brazil","S\u00e3o Paulo Branch, Ludwig Institute for Cancer Research, S\u00e3o Paulo, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio de Biodados, Dpto. de Bioqu\u00edmica e Imunologia, ICB - UFMG., 31270-901, Belo Horizonte, MG, Brazil","institution_ids":["https://openalex.org/I110200422"]},{"raw_affiliation_string":"S\u00e3o Paulo Branch, Ludwig Institute for Cancer Research, 01323-903, S\u00e3o Paulo, SP, Brazil","institution_ids":["https://openalex.org/I196064397"]},{"raw_affiliation_string":"Laborat\u00f3rio de Biodados, Dpto. de Bioqu\u00edmica e Imunologia, ICB - UFMG., Belo Horizonte, Brazil","institution_ids":["https://openalex.org/I110200422"]},{"raw_affiliation_string":"S\u00e3o Paulo Branch, Ludwig Institute for Cancer Research, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I4210130541"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020119631","display_name":"Fernanda Stussi","orcid":"https://orcid.org/0000-0003-3453-7335"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Fernanda Stussi","raw_affiliation_strings":["Laborat\u00f3rio de Biodados, Dpto. de Bioqu\u00edmica e Imunologia, ICB - UFMG., 31270-901, Belo Horizonte, MG, Brazil","Laborat\u00f3rio de Biodados, Dpto. de Bioqu\u00edmica e Imunologia, ICB - UFMG, Belo Horizonte, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio de Biodados, Dpto. de Bioqu\u00edmica e Imunologia, ICB - UFMG., 31270-901, Belo Horizonte, MG, Brazil","institution_ids":["https://openalex.org/I110200422"]},{"raw_affiliation_string":"Laborat\u00f3rio de Biodados, Dpto. de Bioqu\u00edmica e Imunologia, ICB - UFMG, Belo Horizonte, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059977137","display_name":"Jos\u00e9 Miguel Ortega","orcid":"https://orcid.org/0000-0003-1132-1910"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"J Miguel Ortega","raw_affiliation_strings":["Laborat\u00f3rio de Biodados, Dpto. de Bioqu\u00edmica e Imunologia, ICB - UFMG., 31270-901, Belo Horizonte, MG, Brazil","Laborat\u00f3rio de Biodados, Dpto. de Bioqu\u00edmica e Imunologia, ICB - UFMG, Belo Horizonte, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio de Biodados, Dpto. de Bioqu\u00edmica e Imunologia, ICB - UFMG., 31270-901, Belo Horizonte, MG, Brazil","institution_ids":["https://openalex.org/I110200422"]},{"raw_affiliation_string":"Laborat\u00f3rio de Biodados, Dpto. de Bioqu\u00edmica e Imunologia, ICB - UFMG, Belo Horizonte, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010178662","display_name":"Miguel A. Andrade\u2010Navarro","orcid":"https://orcid.org/0000-0001-6650-1711"},"institutions":[{"id":"https://openalex.org/I205582932","display_name":"Max Delbr\u00fcck Center","ror":"https://ror.org/04p5ggc03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I205582932"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Miguel A Andrade-Navarro","raw_affiliation_strings":["Computational Biology and Data Mining Group, Max Delbr\u00fcck Center for Molecular Medicine., Robert-R\u00f6ssle-Strasse. 10, D-13125, Berlin, Germany","Computational Biology and Data Mining Group, Max Delbr\u00fcck Center for Molecular Medicine., Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology and Data Mining Group, Max Delbr\u00fcck Center for Molecular Medicine., Robert-R\u00f6ssle-Strasse. 10, D-13125, Berlin, Germany","institution_ids":["https://openalex.org/I205582932"]},{"raw_affiliation_string":"Computational Biology and Data Mining Group, Max Delbr\u00fcck Center for Molecular Medicine., Berlin, Germany","institution_ids":["https://openalex.org/I205582932"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5063632942"],"corresponding_institution_ids":["https://openalex.org/I205582932"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.9953,"has_fulltext":true,"cited_by_count":54,"citation_normalized_percentile":{"value":0.8620863,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"12","issue":"1","first_page":"435","last_page":"435"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8705999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8705999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.11840000003576279,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.0010000000474974513,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7391220331192017},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.6121998429298401},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5152342915534973},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5082771182060242},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4931335151195526},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.47828182578086853},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4472643733024597},{"id":"https://openalex.org/keywords/web-resource","display_name":"Web resource","score":0.44465896487236023},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.44390150904655457},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.43399834632873535},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.42567914724349976},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37235474586486816},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.35592639446258545},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3531617224216461},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15513166785240173},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15461280941963196}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7391220331192017},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.6121998429298401},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5152342915534973},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5082771182060242},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4931335151195526},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.47828182578086853},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4472643733024597},{"id":"https://openalex.org/C65603577","wikidata":"https://www.wikidata.org/wiki/Q3427877","display_name":"Web resource","level":2,"score":0.44465896487236023},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.44390150904655457},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.43399834632873535},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.42567914724349976},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37235474586486816},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.35592639446258545},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3531617224216461},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15513166785240173},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15461280941963196},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-12-435","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-435","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-435","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22070195","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22070195","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:edoc.mdc-berlin.de:11902","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400224","display_name":"MDC Repository (Max-Delbrueck-Center for Molecular Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:9090741fc82641e8ba9796d575d7d81f","is_oa":false,"landing_page_url":"https://doaj.org/article/9090741fc82641e8ba9796d575d7d81f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 435 (2011)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2238112","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3228910","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:orbilu.uni.lu:10993/26645","is_oa":true,"landing_page_url":"http://orbilu.uni.lu/handle/10993/26645","pdf_url":null,"source":{"id":"https://openalex.org/S4306401815","display_name":"Open Repository and Bibliography (University of Luxembourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I186903577","host_organization_name":"University of Luxembourg","host_organization_lineage":["https://openalex.org/I186903577"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC bioinformatics, 12, 435. England (2011).","raw_type":null}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-435","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-435","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-435","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5600000023841858}],"awards":[],"funders":[{"id":"https://openalex.org/F4320311323","display_name":"Ottawa Hospital Research Institute","ror":"https://ror.org/03c62dg59"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2050263604.pdf","grobid_xml":"https://content.openalex.org/works/W2050263604.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1527671059","https://openalex.org/W1550258693","https://openalex.org/W1972275086","https://openalex.org/W1978501763","https://openalex.org/W1983719539","https://openalex.org/W1985516721","https://openalex.org/W1996002274","https://openalex.org/W1998154529","https://openalex.org/W2032887160","https://openalex.org/W2036832250","https://openalex.org/W2037210357","https://openalex.org/W2040223842","https://openalex.org/W2050894133","https://openalex.org/W2065878937","https://openalex.org/W2096525273","https://openalex.org/W2099393019","https://openalex.org/W2100927775","https://openalex.org/W2103320915","https://openalex.org/W2104768328","https://openalex.org/W2107005506","https://openalex.org/W2107580398","https://openalex.org/W2108706252","https://openalex.org/W2111627817","https://openalex.org/W2111776022","https://openalex.org/W2113613985","https://openalex.org/W2115159360","https://openalex.org/W2120535580","https://openalex.org/W2120736575","https://openalex.org/W2127657192","https://openalex.org/W2134249758","https://openalex.org/W2136992683","https://openalex.org/W2138842411","https://openalex.org/W2148395543","https://openalex.org/W2152698860","https://openalex.org/W2161062388","https://openalex.org/W2161377381","https://openalex.org/W2162965868","https://openalex.org/W2166474856","https://openalex.org/W2400350205","https://openalex.org/W2943896283","https://openalex.org/W4213060373","https://openalex.org/W4240231372","https://openalex.org/W4244606935"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W1996655143","https://openalex.org/W3094927943","https://openalex.org/W2100046112","https://openalex.org/W54129904","https://openalex.org/W2350668434","https://openalex.org/W2066232588","https://openalex.org/W2769306272","https://openalex.org/W2952639490","https://openalex.org/W2056182651"],"abstract_inverted_index":{"BACKGROUND:":[0],"Biological":[1],"function":[2],"is":[3,56,164],"greatly":[4],"dependent":[5],"on":[6,77],"the":[7,18,23,31,41,47,103,134,154],"interactions":[8,34,50,86,120],"of":[9,33,43,49,79,106,119,124,156],"proteins":[10,13,38],"with":[11,74],"other":[12],"and":[14,37,58,131,152],"genes.":[15],"Abstracts":[16],"from":[17,121],"biomedical":[19],"literature":[20],"stored":[21],"in":[22,63,145,149,153],"NCBI's":[24],"PubMed":[25,125],"database":[26],"can":[27],"be":[28],"used":[29],"for":[30,84],"derivation":[32],"between":[35],"genes":[36],"by":[39,128],"identifying":[40],"co-occurrences":[42],"their":[44],"terms.":[45],"Often,":[46],"amount":[48],"obtained":[51],"through":[52],"such":[53,96,107],"an":[54],"approach":[55],"large":[57],"may":[59],"mix":[60],"processes":[61],"occurring":[62],"different":[64],"contexts.":[65],"Current":[66],"tools":[67],"do":[68],"not":[69],"allow":[70],"studying":[71],"these":[72],"data":[73,108],"a":[75,82,89,93,112,117,122,129,165],"focus":[76],"concepts":[78],"relevance":[80],"to":[81,88,92,138,159],"user,":[83,130],"example,":[85],"related":[87],"disease":[90,151],"or":[91],"biological":[94],"mechanism":[95],"as":[97],"protein":[98,147],"aggregation.":[99],"RESULTS:":[100],"To":[101],"help":[102],"concept-oriented":[104],"exploration":[105],"we":[109],"developed":[110],"PESCADOR,":[111],"web":[113,168],"tool":[114],"that":[115],"extracts":[116],"network":[118,136],"set":[123],"abstracts":[126],"given":[127],"allows":[132],"filtering":[133],"interaction":[135],"according":[137],"user-defined":[139],"concepts.":[140],"We":[141],"illustrate":[142],"its":[143],"use":[144],"exploring":[146],"aggregation":[148],"neurodegenerative":[150],"expansion":[155],"pathways":[157],"associated":[158],"colon":[160],"cancer.":[161],"CONCLUSIONS:":[162],"PESCADOR":[163],"platform":[166],"independent":[167],"resource":[169],"available":[170],"at:":[171],"http://cbdm.mdc-berlin.de/tools/pescador/":[172]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":5},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":5}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2016-06-24T00:00:00"}
