{"id":"https://openalex.org/W1976656799","doi":"https://doi.org/10.1186/1471-2105-12-376","title":"EnzymeDetector: an integrated enzyme function prediction tool and database","display_name":"EnzymeDetector: an integrated enzyme function prediction tool and database","publication_year":2011,"publication_date":"2011-09-23","ids":{"openalex":"https://openalex.org/W1976656799","doi":"https://doi.org/10.1186/1471-2105-12-376","mag":"1976656799","pmid":"https://pubmed.ncbi.nlm.nih.gov/21943292"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-376","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-376","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-376","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-376","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040726919","display_name":"Susanne Quester","orcid":null},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Susanne Quester","raw_affiliation_strings":["Institute of Bioinformatics and Biochemistry, Technische Universit\u00e4t Braunschweig, Braunschweig, Germany. S.Quester@tu-bs.de","Institute of Bioinformatics and Biochemistry, Technische Universit\u00e4t Braunschweig, 38106, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Biochemistry, Technische Universit\u00e4t Braunschweig, Braunschweig, Germany. S.Quester@tu-bs.de","institution_ids":["https://openalex.org/I94509681"]},{"raw_affiliation_string":"Institute of Bioinformatics and Biochemistry, Technische Universit\u00e4t Braunschweig, 38106, Germany","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043042218","display_name":"Dietmar Schomburg","orcid":"https://orcid.org/0000-0002-3354-822X"},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dietmar Schomburg","raw_affiliation_strings":["Institute of Bioinformatics and Biochemistry, Technische Universit\u00e4t Braunschweig, Langer Kamp 19b, 38106, Braunschweig, Germany","Institute of Bioinformatics and Biochemistry, Technische Universit\u00e4t Braunschweig, 38106, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Biochemistry, Technische Universit\u00e4t Braunschweig, Langer Kamp 19b, 38106, Braunschweig, Germany","institution_ids":["https://openalex.org/I94509681"]},{"raw_affiliation_string":"Institute of Bioinformatics and Biochemistry, Technische Universit\u00e4t Braunschweig, 38106, Germany","institution_ids":["https://openalex.org/I94509681"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.7298,"has_fulltext":true,"cited_by_count":54,"citation_normalized_percentile":{"value":0.83443307,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"12","issue":"1","first_page":"376","last_page":"376"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.7178999781608582,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.7178999781608582,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.0544000007212162,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.0421999990940094,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5396324396133423},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49835872650146484},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4826374650001526},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.47690343856811523},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4051000475883484},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23566004633903503},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12671411037445068},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.10532772541046143},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06396821141242981}],"concepts":[{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5396324396133423},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49835872650146484},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4826374650001526},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.47690343856811523},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4051000475883484},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23566004633903503},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12671411037445068},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.10532772541046143},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06396821141242981}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-12-376","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-376","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-376","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21943292","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21943292","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:f639f6ad1dd345cba6400459a1a75ab2","is_oa":true,"landing_page_url":"https://doaj.org/article/f639f6ad1dd345cba6400459a1a75ab2","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 376 (2011)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2223579","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3224133","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-376","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-376","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-376","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320322958","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1976656799.pdf","grobid_xml":"https://content.openalex.org/works/W1976656799.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1905004247","https://openalex.org/W1994787881","https://openalex.org/W2009977236","https://openalex.org/W2060797027","https://openalex.org/W2070517644","https://openalex.org/W2085836956","https://openalex.org/W2087730228","https://openalex.org/W2102429534","https://openalex.org/W2110612352","https://openalex.org/W2111209586","https://openalex.org/W2111220881","https://openalex.org/W2111619115","https://openalex.org/W2125546020","https://openalex.org/W2127640118","https://openalex.org/W2128601422","https://openalex.org/W2142678478","https://openalex.org/W2148000475","https://openalex.org/W2150700412","https://openalex.org/W2155954664","https://openalex.org/W2159482845","https://openalex.org/W2160375677","https://openalex.org/W2164760520","https://openalex.org/W2165674132","https://openalex.org/W2171437346","https://openalex.org/W2612240612","https://openalex.org/W4233060585","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,140,174,204],"ability":[2],"to":[3,146],"accurately":[4],"predict":[5],"enzymatic":[6],"functions":[7,83],"is":[8,98],"an":[9],"essential":[10],"prerequisite":[11],"for":[12,135,154],"the":[13,19,59,63,70,80,85,130,144,155,168,193],"interpretation":[14],"of":[15,23,62,129,138,177,192,199],"cellular":[16],"functions,":[17],"and":[18,21,43,53,78,89,116,126,152,167,211],"reconstruction":[20],"analysis":[22],"metabolic":[24],"models.":[25],"Several":[26],"biological":[27],"databases":[28,39,88,194],"exist":[29],"that":[30,187],"provide":[31,40],"such":[32],"information.":[33,184],"However,":[34],"in":[35,58,189,208],"many":[36],"cases":[37],"these":[38],"partly":[41],"different":[42,156],"inconsistent":[44],"genome":[45,137],"annotations.":[46],"DESCRIPTION:":[47],"We":[48],"analysed":[49],"nine":[50],"prokaryotic":[51],"genomes":[52],"found":[54],"about":[55],"70%":[56],"inconsistencies":[57],"enzyme":[60,82,109,132],"predictions":[61],"main":[64,86],"annotation":[65,71,87,170,180],"resources.":[66],"Therefore,":[67],"we":[68],"implemented":[69],"pipeline":[72],"EnzymeDetector.":[73],"This":[74,97],"tool":[75],"automatically":[76],"compares":[77],"evaluates":[79],"assigned":[81],"from":[84,111],"supplements":[90],"them":[91],"with":[92,148],"its":[93],"own":[94],"function":[95,133],"prediction.":[96],"based":[99],"on":[100,105,117],"a":[101,124,136,209],"sequence":[102,118],"similarity":[103],"analysis,":[104],"manually":[106],"created":[107],"organism-specific":[108],"information":[110],"BRENDA":[112],"(Braunschweig":[113],"Enzyme":[114],"Database),":[115],"pattern":[119],"searches.":[120],"CONCLUSIONS:":[121],"EnzymeDetector":[122],"provides":[123,182],"fast":[125],"comprehensive":[127],"overview":[128],"available":[131],"annotations":[134],"interest.":[139],"web":[141],"interface":[142],"allows":[143],"user":[145],"work":[147],"customisable":[149],"weighting":[150],"schemes":[151],"cut-offs":[153],"prediction":[157],"methods.":[158],"These":[159],"customised":[160],"quality":[161],"criteria":[162],"can":[163,171,195,212],"easily":[164],"be":[165,172,196,213],"applied,":[166],"resulting":[169],"downloaded.":[173],"summarised":[175],"view":[176],"all":[178],"used":[179],"sources":[181],"up-to-date":[183],"Annotation":[185],"errors":[186],"occur":[188],"only":[190],"one":[191],"recognised":[197],"(because":[198],"their":[200],"low":[201],"relevance":[202],"score).":[203],"results":[205],"are":[206],"stored":[207],"database":[210],"accessed":[214],"at":[215],"http://enzymedetector.tu-bs.de.":[216]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":4}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
