{"id":"https://openalex.org/W1990675829","doi":"https://doi.org/10.1186/1471-2105-12-341","title":"Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature","display_name":"Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature","publication_year":2011,"publication_date":"2011-08-17","ids":{"openalex":"https://openalex.org/W1990675829","doi":"https://doi.org/10.1186/1471-2105-12-341","mag":"1990675829","pmid":"https://pubmed.ncbi.nlm.nih.gov/21846404"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-341","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-341","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-341","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-341","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100448121","display_name":"Wen Zhang","orcid":"https://orcid.org/0000-0001-5221-2628"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wen Zhang","raw_affiliation_strings":["School of Computer, Wuhan University, Wuhan 430072, China. zhangwen@whu.edu.cn","School of computer, Wuhan University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Wuhan University, Wuhan 430072, China. zhangwen@whu.edu.cn","institution_ids":["https://openalex.org/I37461747"]},{"raw_affiliation_string":"School of computer, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014672057","display_name":"Yi Xiong","orcid":"https://orcid.org/0000-0003-2910-6725"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Xiong","raw_affiliation_strings":["School of Computer, Wuhan University, Wuhan, 430072, China","School of computer, Wuhan University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Wuhan University, Wuhan, 430072, China","institution_ids":["https://openalex.org/I37461747"]},{"raw_affiliation_string":"School of computer, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059200688","display_name":"Meng Zhao","orcid":"https://orcid.org/0000-0001-6883-865X"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meng Zhao","raw_affiliation_strings":["School of Computer, Wuhan University, Wuhan, 430072, China","School of computer, Wuhan University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Wuhan University, Wuhan, 430072, China","institution_ids":["https://openalex.org/I37461747"]},{"raw_affiliation_string":"School of computer, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043300518","display_name":"Hua Zou","orcid":"https://orcid.org/0000-0002-3641-2686"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hua Zou","raw_affiliation_strings":["School of Computer, Wuhan University, Wuhan, 430072, China","School of computer, Wuhan University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Wuhan University, Wuhan, 430072, China","institution_ids":["https://openalex.org/I37461747"]},{"raw_affiliation_string":"School of computer, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076672260","display_name":"Xinghuo Ye","orcid":null},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinghuo Ye","raw_affiliation_strings":["School of Computer, Wuhan University, Wuhan, 430072, China","School of computer, Wuhan University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Wuhan University, Wuhan, 430072, China","institution_ids":["https://openalex.org/I37461747"]},{"raw_affiliation_string":"School of computer, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100446290","display_name":"Juan Liu","orcid":"https://orcid.org/0000-0001-9344-7415"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Juan Liu","raw_affiliation_strings":["School of Computer, Wuhan University, Wuhan, 430072, China","School of computer, Wuhan University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Wuhan University, Wuhan, 430072, China","institution_ids":["https://openalex.org/I37461747"]},{"raw_affiliation_string":"School of computer, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100446290","https://openalex.org/A5100448121"],"corresponding_institution_ids":["https://openalex.org/I37461747"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":4.7443,"has_fulltext":true,"cited_by_count":109,"citation_normalized_percentile":{"value":0.96085356,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"12","issue":"1","first_page":"341","last_page":"341"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9842000007629395,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9842000007629395,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.007600000128149986,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.0015999999595806003,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.9737310409545898},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6208454370498657},{"id":"https://openalex.org/keywords/epitope-mapping","display_name":"Epitope mapping","score":0.5144896507263184},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.4947888255119324},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4901512563228607},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47685348987579346},{"id":"https://openalex.org/keywords/linear-epitope","display_name":"Linear epitope","score":0.4594358801841736},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.4545144736766815},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.42253583669662476},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36884650588035583},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32579368352890015},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3226620852947235},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19664910435676575}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.9737310409545898},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6208454370498657},{"id":"https://openalex.org/C2781241564","wikidata":"https://www.wikidata.org/wiki/Q1347450","display_name":"Epitope mapping","level":4,"score":0.5144896507263184},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.4947888255119324},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4901512563228607},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47685348987579346},{"id":"https://openalex.org/C78598654","wikidata":"https://www.wikidata.org/wiki/Q17140316","display_name":"Linear epitope","level":4,"score":0.4594358801841736},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.4545144736766815},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.42253583669662476},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36884650588035583},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32579368352890015},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3226620852947235},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19664910435676575},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-12-341","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-341","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-341","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21846404","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21846404","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:30019d5b1ddd4057ad589a327d25f35b","is_oa":true,"landing_page_url":"https://doaj.org/article/30019d5b1ddd4057ad589a327d25f35b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 341 (2011)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2239923","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3228550","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-341","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-341","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-341","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7400000095367432,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G3529230626","display_name":"\u57fa\u4e8e\u673a\u5668\u5b66\u4e60\u7684\u9ad8\u7cbe\u5ea6B\u7ec6\u80de\u8868\u4f4d\u9884\u6d4b\u6a21\u578b\u7814\u7a76","funder_award_id":"61103126","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G951282541","display_name":"3D\u57fa\u56e0\u8868\u8fbe\u6570\u636e\u4e2d\u8d1f\u76f8\u5173\u6a21\u5f0f\u7684\u6316\u6398\u53ca\u57fa\u56e0\u8c03\u63a7\u673a\u5236\u7684\u63a8\u5bfc","funder_award_id":"60970063","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321106","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1990675829.pdf","grobid_xml":"https://content.openalex.org/works/W1990675829.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1228613833","https://openalex.org/W1526839960","https://openalex.org/W1535117461","https://openalex.org/W1968361401","https://openalex.org/W1969842170","https://openalex.org/W1983113740","https://openalex.org/W1989275845","https://openalex.org/W1993568862","https://openalex.org/W2008708467","https://openalex.org/W2014744153","https://openalex.org/W2021495307","https://openalex.org/W2023021255","https://openalex.org/W2035014358","https://openalex.org/W2050625197","https://openalex.org/W2066609648","https://openalex.org/W2087202599","https://openalex.org/W2087937056","https://openalex.org/W2095104107","https://openalex.org/W2096445115","https://openalex.org/W2097874743","https://openalex.org/W2098037300","https://openalex.org/W2100617793","https://openalex.org/W2102046002","https://openalex.org/W2106150646","https://openalex.org/W2110298304","https://openalex.org/W2110474492","https://openalex.org/W2112743424","https://openalex.org/W2120204563","https://openalex.org/W2125866257","https://openalex.org/W2133990480","https://openalex.org/W2140468230","https://openalex.org/W2149458203","https://openalex.org/W2149984099","https://openalex.org/W2151460035","https://openalex.org/W2152116196","https://openalex.org/W2155015540","https://openalex.org/W2158781610","https://openalex.org/W2158899863","https://openalex.org/W2160397907","https://openalex.org/W2167884443","https://openalex.org/W2171732889","https://openalex.org/W2196778533","https://openalex.org/W2424886262","https://openalex.org/W2911964244"],"related_works":["https://openalex.org/W3189724180","https://openalex.org/W2062700146","https://openalex.org/W4241031629","https://openalex.org/W4214932605","https://openalex.org/W2471846512","https://openalex.org/W2019166448","https://openalex.org/W2896840187","https://openalex.org/W1988043950","https://openalex.org/W2003373552","https://openalex.org/W2031358662"],"abstract_inverted_index":{"BACKGROUND:":[0],"Antigen-antibody":[1,20],"interactions":[2],"are":[3,29,37,67],"key":[4],"events":[5],"in":[6,51,58,338],"immune":[7,15],"system,":[8],"which":[9,124,166,218],"provide":[10],"important":[11],"clues":[12],"to":[13,94,135,156,189,226,240,256,354,371],"the":[14,22,26,33,59,77,82,96,106,110,121,158,168,176,181,190,198,220,227,243,248,258,270,274,282,308,315,320,327,334,339,358,365,373],"processes":[16],"and":[17,81,120,180,205,235,269,273,319],"responses.":[18],"In":[19,92,133],"interactions,":[21],"specific":[23],"sites":[24],"on":[25,101,247,364],"antigens":[27],"that":[28,185,288],"directly":[30],"bound":[31,317],"by":[32,265,300],"B-cell":[34,41,65,259,294],"produced":[35],"antibodies":[36],"well":[38],"known":[39],"as":[40,281],"epitopes.":[42,193,362],"The":[43,173,285],"identification":[44],"of":[45,54,84,112,117,146,151,162,170,192,197,223,229,312,324,360],"epitopes":[46,66,261,295,375],"is":[47,87,154,208,216,238,279,352],"a":[48,144,233,253,369],"hot":[49],"topic":[50],"bioinformatics":[52],"because":[53],"their":[55],"potential":[56],"use":[57],"epitope-based":[60],"drug":[61],"design.":[62],"Although":[63],"most":[64],"discontinuous":[68],"(or":[69],"conformational),":[70],"insufficient":[71],"effort":[72],"has":[73],"been":[74],"put":[75],"into":[76],"conformational":[78,260,293,361,374],"epitope":[79,131,206],"prediction,":[80],"performance":[83],"existing":[85],"methods":[86],"far":[88],"from":[89,262,376],"satisfaction.":[90],"RESULTS:":[91],"order":[93,134],"develop":[95,368],"high-accuracy":[97],"model,":[98],"we":[99,139,251,367],"focus":[100],"some":[102],"possible":[103],"aspects":[104],"concerning":[105],"prediction":[107,336,359],"performance,":[108],"including":[109],"impact":[111,169],"interior":[113,171,186],"residues,":[114,119],"different":[115],"contributions":[116,222],"adjacent":[118,212,224],"imbalanced":[122,244],"data":[123],"contain":[125],"much":[126],"more":[127],"non-epitope":[128,203],"residues":[129,187,225],"than":[130],"residues.":[132],"address":[136],"above":[137,249],"issues,":[138],"take":[140],"following":[141],"strategies.":[142],"Firstly,":[143],"concept":[145],"'thick":[147],"surface":[148,164,178,182],"patch'":[149,153],"instead":[150],"'surface":[152],"introduced":[155],"describe":[157],"local":[159],"spatial":[160],"context":[161],"each":[163],"residue,":[165],"considers":[167],"residue.":[172],"comparison":[174],"between":[175,202],"thick":[177],"patch":[179,183],"shows":[184],"contribute":[188],"recognition":[191],"Secondly,":[194],"statistical":[195],"significance":[196],"distance":[199,214],"distribution":[200],"difference":[201],"patches":[204,207],"observed,":[209],"thus":[210],"an":[211],"residue":[213],"feature":[215],"presented,":[217],"reflects":[219],"unequal":[221],"location":[228],"binding":[230],"sites.":[231],"Thirdly,":[232],"bootstrapping":[234],"voting":[236],"procedure":[237],"adopted":[239],"deal":[241],"with":[242,296,333],"dataset.":[245,330],"Based":[246,363],"ideas,":[250],"propose":[252],"new":[254],"method":[255,290,306,343,351],"identify":[257],"3D":[263,377],"structures":[264],"combining":[266],"conventional":[267],"features":[268],"proposed":[271],"feature,":[272],"random":[275],"forest":[276],"(RF)":[277],"algorithm":[278],"used":[280],"classification":[283],"engine.":[284],"experiments":[286],"show":[287],"our":[289,305,342],"can":[291],"predict":[292,372],"high":[297],"accuracy.":[298],"Evaluated":[299],"leave-one-out":[301],"cross":[302],"validation":[303],"(LOOCV),":[304],"achieves":[307],"mean":[309,321],"AUC":[310,322],"value":[311,323],"0.633":[313],"for":[314,326,357],"benchmark":[316,328],"dataset,":[318],"0.654":[325],"unbound":[329],"When":[331],"compared":[332],"state-of-the-art":[335],"models":[337],"independent":[340],"test,":[341],"demonstrates":[344],"comparable":[345],"or":[346],"better":[347],"performance.":[348],"CONCLUSIONS:":[349],"Our":[350],"demonstrated":[353],"be":[355],"effective":[356],"study,":[366],"tool":[370],"structures,":[378],"available":[379],"at":[380],"http://code.google.com/p/my-project-bpredictor/downloads/list.":[381]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":16},{"year":2013,"cited_by_count":13},{"year":2012,"cited_by_count":9}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
