{"id":"https://openalex.org/W2153411099","doi":"https://doi.org/10.1186/1471-2105-12-330","title":"Randomization techniques for assessing the significance of gene periodicity results","display_name":"Randomization techniques for assessing the significance of gene periodicity results","publication_year":2011,"publication_date":"2011-08-09","ids":{"openalex":"https://openalex.org/W2153411099","doi":"https://doi.org/10.1186/1471-2105-12-330","mag":"2153411099","pmid":"https://pubmed.ncbi.nlm.nih.gov/21827656"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-330","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-330","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-330","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-330","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030352001","display_name":"Aleksi Kallio","orcid":"https://orcid.org/0000-0002-6278-5160"},"institutions":[{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210150043","display_name":"CSC - IT Center for Science (Finland)","ror":"https://ror.org/04m8m1253","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210150043"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Aleksi Kallio","raw_affiliation_strings":["Research Environment Services, CSC-IT Center for Science Ltd, P.O. Box 405, Espoo 02101, Finland. aleksi.kallio@helsinki.fi","Data Analysis Research Programme, Helsinki Institute for Information Technology HIIT, Helsinki, Finland","Department of Information and Computer Science, Aalto University, Espoo, Finland","Research Environment Services, CSC - IT Center for Science Ltd., Espoo, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Environment Services, CSC-IT Center for Science Ltd, P.O. Box 405, Espoo 02101, Finland. aleksi.kallio@helsinki.fi","institution_ids":["https://openalex.org/I4210150043"]},{"raw_affiliation_string":"Data Analysis Research Programme, Helsinki Institute for Information Technology HIIT, Helsinki, Finland","institution_ids":["https://openalex.org/I32943570"]},{"raw_affiliation_string":"Department of Information and Computer Science, Aalto University, Espoo, Finland","institution_ids":["https://openalex.org/I9927081"]},{"raw_affiliation_string":"Research Environment Services, CSC - IT Center for Science Ltd., Espoo, Finland","institution_ids":["https://openalex.org/I4210150043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051351455","display_name":"Niko Vuokko","orcid":null},"institutions":[{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Niko Vuokko","raw_affiliation_strings":["Data Analysis Research Programme, Helsinki Institute for Information Technology HIIT, Helsinki, Finland","Department of Information and Computer Science, Aalto University, P.O. Box 15400, Espoo, 00076, Finland","Department of Information and Computer Science, Aalto University, Espoo, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Data Analysis Research Programme, Helsinki Institute for Information Technology HIIT, Helsinki, Finland","institution_ids":["https://openalex.org/I32943570"]},{"raw_affiliation_string":"Department of Information and Computer Science, Aalto University, P.O. Box 15400, Espoo, 00076, Finland","institution_ids":["https://openalex.org/I9927081"]},{"raw_affiliation_string":"Department of Information and Computer Science, Aalto University, Espoo, Finland","institution_ids":["https://openalex.org/I9927081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059585472","display_name":"Markus Ojala","orcid":"https://orcid.org/0000-0002-7784-8179"},"institutions":[{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Markus Ojala","raw_affiliation_strings":["Data Analysis Research Programme, Helsinki Institute for Information Technology HIIT, Helsinki, Finland","Department of Information and Computer Science, Aalto University, P.O. Box 15400, Espoo, 00076, Finland","Department of Information and Computer Science, Aalto University, Espoo, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Data Analysis Research Programme, Helsinki Institute for Information Technology HIIT, Helsinki, Finland","institution_ids":["https://openalex.org/I32943570"]},{"raw_affiliation_string":"Department of Information and Computer Science, Aalto University, P.O. Box 15400, Espoo, 00076, Finland","institution_ids":["https://openalex.org/I9927081"]},{"raw_affiliation_string":"Department of Information and Computer Science, Aalto University, Espoo, Finland","institution_ids":["https://openalex.org/I9927081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054652878","display_name":"Niina Haiminen","orcid":"https://orcid.org/0000-0002-8663-1019"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Niina Haiminen","raw_affiliation_strings":["Data Analysis Research Programme, Helsinki Institute for Information Technology HIIT, Helsinki, Finland","Department of Computer Science, University of Helsinki, P.O. Box 68, Helsinki, 00014, Finland","Department of Computer Science, University of Helsinki, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Data Analysis Research Programme, Helsinki Institute for Information Technology HIIT, Helsinki, Finland","institution_ids":["https://openalex.org/I32943570"]},{"raw_affiliation_string":"Department of Computer Science, University of Helsinki, P.O. Box 68, Helsinki, 00014, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"Department of Computer Science, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013005096","display_name":"Heikki Mannila","orcid":null},"institutions":[{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Heikki Mannila","raw_affiliation_strings":["Data Analysis Research Programme, Helsinki Institute for Information Technology HIIT, Helsinki, Finland","Department of Information and Computer Science, Aalto University, P.O. Box 15400, Espoo, 00076, Finland","Department of Information and Computer Science, Aalto University, Espoo, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Data Analysis Research Programme, Helsinki Institute for Information Technology HIIT, Helsinki, Finland","institution_ids":["https://openalex.org/I32943570"]},{"raw_affiliation_string":"Department of Information and Computer Science, Aalto University, P.O. Box 15400, Espoo, 00076, Finland","institution_ids":["https://openalex.org/I9927081"]},{"raw_affiliation_string":"Department of Information and Computer Science, Aalto University, Espoo, Finland","institution_ids":["https://openalex.org/I9927081"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5030352001"],"corresponding_institution_ids":["https://openalex.org/I32943570","https://openalex.org/I4210150043","https://openalex.org/I9927081"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.7293,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.69529802,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"12","issue":"1","first_page":"330","last_page":"330"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9111999869346619,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9111999869346619,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.018699999898672104,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.01360000018030405,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.6416230201721191},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6051960587501526},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4952510893344879},{"id":"https://openalex.org/keywords/randomization","display_name":"Randomization","score":0.4944777488708496},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.48359745740890503},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.48011302947998047},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.37167078256607056},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36659902334213257},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2835969030857086},{"id":"https://openalex.org/keywords/clinical-trial","display_name":"Clinical trial","score":0.13004183769226074}],"concepts":[{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6416230201721191},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6051960587501526},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4952510893344879},{"id":"https://openalex.org/C204243189","wikidata":"https://www.wikidata.org/wiki/Q1363085","display_name":"Randomization","level":3,"score":0.4944777488708496},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.48359745740890503},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48011302947998047},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.37167078256607056},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36659902334213257},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2835969030857086},{"id":"https://openalex.org/C535046627","wikidata":"https://www.wikidata.org/wiki/Q30612","display_name":"Clinical trial","level":2,"score":0.13004183769226074}],"mesh":[{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010507","descriptor_name":"Periodicity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010507","descriptor_name":"Periodicity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010507","descriptor_name":"Periodicity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057906","descriptor_name":"Circadian Clocks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057906","descriptor_name":"Circadian Clocks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057906","descriptor_name":"Circadian Clocks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-12-330","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-330","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-330","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21827656","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21827656","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2201316","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3199764","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:352356b613ea481c80b8293b9195d744","is_oa":true,"landing_page_url":"https://doaj.org/article/352356b613ea481c80b8293b9195d744","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 330 (2011)","raw_type":"article"},{"id":"pmh:oai:helda.helsinki.fi:10138/162817","is_oa":true,"landing_page_url":"http://hdl.handle.net/10138/162817","pdf_url":null,"source":{"id":"https://openalex.org/S4210213322","display_name":"Ty\u00f6v\u00e4entutkimus Vuosikirja","issn_l":"0784-1272","issn":["0784-1272","1459-7780"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-330","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-330","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-330","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2153411099.pdf","grobid_xml":"https://content.openalex.org/works/W2153411099.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W14845191","https://openalex.org/W1216394864","https://openalex.org/W1963916765","https://openalex.org/W1965138864","https://openalex.org/W1978196276","https://openalex.org/W2009449033","https://openalex.org/W2015701326","https://openalex.org/W2020561516","https://openalex.org/W2021903957","https://openalex.org/W2048570414","https://openalex.org/W2066586173","https://openalex.org/W2074089196","https://openalex.org/W2082094552","https://openalex.org/W2085507008","https://openalex.org/W2101347623","https://openalex.org/W2103453943","https://openalex.org/W2105381419","https://openalex.org/W2105494575","https://openalex.org/W2106547200","https://openalex.org/W2110065044","https://openalex.org/W2112047656","https://openalex.org/W2121044470","https://openalex.org/W2123902215","https://openalex.org/W2128397850","https://openalex.org/W2128909276","https://openalex.org/W2132261436","https://openalex.org/W2134384386","https://openalex.org/W2135597559","https://openalex.org/W2142460132","https://openalex.org/W2146393404","https://openalex.org/W2163917503","https://openalex.org/W2167098291","https://openalex.org/W2169352946","https://openalex.org/W2169935868","https://openalex.org/W2796856748","https://openalex.org/W4210309498","https://openalex.org/W4230792699","https://openalex.org/W4239632189","https://openalex.org/W4246168648","https://openalex.org/W4248064837","https://openalex.org/W4256170606","https://openalex.org/W4293076803"],"related_works":["https://openalex.org/W2520316949","https://openalex.org/W2120509628","https://openalex.org/W3215259711","https://openalex.org/W2348760775","https://openalex.org/W1978318333","https://openalex.org/W4361961354","https://openalex.org/W2974762004","https://openalex.org/W2157319076","https://openalex.org/W2064599068","https://openalex.org/W4361950035"],"abstract_inverted_index":{"BACKGROUND:":[0],"Modern":[1],"high-throughput":[2,72,318],"measurement":[3],"technologies":[4],"such":[5,40,149],"as":[6,41,150],"DNA":[7,310],"microarrays":[8,311],"and":[9,104,154,171,184,220,267,289,316],"next":[10],"generation":[11],"sequencers":[12],"produce":[13],"extensive":[14],"datasets.":[15],"With":[16],"large":[17,206],"datasets":[18],"the":[19,69,81,97,161,178,182,205,209,216,223,239,250],"emphasis":[20],"has":[21],"been":[22,126],"moving":[23],"from":[24,151,230],"traditional":[25],"statistical":[26,79,298],"tests":[27],"to":[28,101,111,195],"new":[29,135,317],"data":[30,73,87,229,334],"mining":[31,88,335],"methods":[32,89,219,278,319,336,351],"that":[33,59,160,326],"are":[34,169,246,287,320],"capable":[35,337],"of":[36,50,65,71,83,122,140,173,181,211,222,241,282,297,338],"detecting":[37],"complex":[38],"patterns,":[39],"clusters,":[42],"regulatory":[43],"networks,":[44],"or":[45],"time":[46,146],"series":[47,147],"periodicity.":[48,201],"Study":[49],"periodic":[51,283],"gene":[52,129,143,152,227,242,284],"expression":[53,144,285],"is":[54,61],"an":[55],"interesting":[56],"research":[57],"question":[58],"also":[60,203,346],"a":[62,134],"good":[63],"example":[64],"challenges":[66],"involved":[67],"in":[68,74,142,208],"analysis":[70],"general.":[75],"Unlike":[76],"for":[77,86,128,137,279,333,349,352],"classical":[78],"tests,":[80],"distribution":[82],"test":[84],"statistic":[85],"cannot":[90],"be":[91,109,192,331,347],"derived":[92],"analytically.":[93],"RESULTS:":[94],"We":[95,116,132,158,176,202],"describe":[96],"randomization":[98,119,218,253],"based":[99],"approach":[100,254],"significance":[102,139,166,281,299,353],"testing,":[103],"show":[105,234],"how":[106,188,235],"it":[107],"can":[108,191],"applied":[110],"detect":[112,196],"periodically":[113],"expressed":[114],"genes.":[115],"present":[117],"four":[118],"methods,":[120,186],"three":[121],"which":[123],"have":[124,312],"previously":[125],"used":[127,194],"cycle":[130,153,228,243],"data.":[131,251],"propose":[133],"method":[136,190,262],"testing":[138,167,224,261,280,292],"periodicity":[141],"short":[145],"data,":[148],"circadian":[155],"clock":[156],"studies.":[157],"argue":[159,325],"underlying":[162,303],"assumptions":[163],"behind":[164],"existing":[165,183],"approaches":[168],"problematic":[170],"some":[172],"them":[174],"unrealistic.":[175],"analyze":[177],"theoretical":[179],"properties":[180],"proposed":[185],"showing":[187],"our":[189],"robustly":[193],"genes":[197,245],"with":[198,256,300,340],"exceptionally":[199],"high":[200],"demonstrate":[204],"differences":[207],"number":[210,240],"significant":[212],"results":[213],"depending":[214],"on":[215,238],"chosen":[217],"parameters":[221],"framework.By":[225],"reanalyzing":[226],"various":[231],"sources,":[232],"we":[233,324],"previous":[236,274],"estimates":[237],"controlled":[244],"not":[247,327],"supported":[248],"by":[249],"Our":[252,291],"combined":[255],"widely":[257],"adopted":[258],"Benjamini-Hochberg":[259],"multiple":[260],"yields":[263],"better":[264],"predictive":[265,307],"power":[266],"produces":[268],"more":[269,301],"accurate":[270],"null":[271],"distributions":[272],"than":[273],"methods.":[275],"CONCLUSIONS:":[276],"Existing":[277],"patterns":[286],"simplistic":[288],"optimistic.":[290],"framework":[293],"allows":[294],"strict":[295],"levels":[296],"realistic":[302],"assumptions,":[304],"without":[305],"losing":[306],"power.":[308],"As":[309],"now":[313],"become":[314],"mainstream":[315],"rapidly":[321],"being":[322],"adopted,":[323],"only":[328],"there":[329,344],"will":[330,345],"need":[332,348],"coping":[339],"immense":[341],"datasets,":[342],"but":[343],"solid":[350],"testing.":[354]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
