{"id":"https://openalex.org/W2061017626","doi":"https://doi.org/10.1186/1471-2105-12-325","title":"How the gene ontology evolves","display_name":"How the gene ontology evolves","publication_year":2011,"publication_date":"2011-08-05","ids":{"openalex":"https://openalex.org/W2061017626","doi":"https://doi.org/10.1186/1471-2105-12-325","mag":"2061017626","pmid":"https://pubmed.ncbi.nlm.nih.gov/21819553"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-325","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-325","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-325","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-325","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027303084","display_name":"Sabina Leonelli","orcid":"https://orcid.org/0000-0002-7815-6609"},"institutions":[{"id":"https://openalex.org/I23923803","display_name":"University of Exeter","ror":"https://ror.org/03yghzc09","country_code":"GB","type":"education","lineage":["https://openalex.org/I23923803"]},{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Sabina Leonelli","raw_affiliation_strings":["ESRC Centre for Genomics in Society, University of Exeter, EX4 4PJ Exeter, UK. s.leonelli@exeter.ac.uk","ESRC Centre for Genomics in Society, University of Exeter, Exeter, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ESRC Centre for Genomics in Society, University of Exeter, EX4 4PJ Exeter, UK. s.leonelli@exeter.ac.uk","institution_ids":["https://openalex.org/I23923803","https://openalex.org/I4210151791"]},{"raw_affiliation_string":"ESRC Centre for Genomics in Society, University of Exeter, Exeter, UK","institution_ids":["https://openalex.org/I23923803","https://openalex.org/I4210151791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084833749","display_name":"Alexander D. Diehl","orcid":"https://orcid.org/0000-0001-9990-8331"},"institutions":[{"id":"https://openalex.org/I4210149000","display_name":"Jacobs Institute","ror":"https://ror.org/04c00sd86","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210149000"]},{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander D Diehl","raw_affiliation_strings":["The Jacobs Neurological Institute, University at Buffalo School of Medicine and Biomedical Sciences, 100 High Street, Buffalo, NY, 14203, USA","The Jacobs Neurological Institute, University at Buffalo School of Medicine and Biomedical Sciences, Buffalo, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jacobs Neurological Institute, University at Buffalo School of Medicine and Biomedical Sciences, 100 High Street, Buffalo, NY, 14203, USA","institution_ids":["https://openalex.org/I4210149000"]},{"raw_affiliation_string":"The Jacobs Neurological Institute, University at Buffalo School of Medicine and Biomedical Sciences, Buffalo, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028991602","display_name":"Karen Christie","orcid":"https://orcid.org/0000-0001-5501-853X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Karen R Christie","raw_affiliation_strings":["Department of Genetics, Stanford University, 1501 S. California Ave, Palo Alto, CA, 94304-5577, USA","Department of Genetics, Stanford University, Palo Alto, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, 1501 S. California Ave, Palo Alto, CA, 94304-5577, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Genetics, Stanford University, Palo Alto, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024953209","display_name":"Midori A. Harris","orcid":"https://orcid.org/0000-0003-4148-4606"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Midori A Harris","raw_affiliation_strings":["EMBL--European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","EMBL\u2010European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EMBL--European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"EMBL\u2010European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069866481","display_name":"Jane Lomax","orcid":"https://orcid.org/0000-0001-8865-4321"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jane Lomax","raw_affiliation_strings":["EMBL--European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","EMBL\u2010European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EMBL--European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"EMBL\u2010European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5027303084"],"corresponding_institution_ids":["https://openalex.org/I23923803","https://openalex.org/I4210151791"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":2.7956,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.91196841,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"12","issue":"1","first_page":"325","last_page":"325"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8740000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8740000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.04179999977350235,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.0414000004529953,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8288353681564331},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.7677748799324036},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6524144411087036},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.608587920665741},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.5942302942276001},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5410628914833069},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.5087226033210754},{"id":"https://openalex.org/keywords/scope","display_name":"Scope (computer science)","score":0.4999070167541504},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.4968891441822052},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.49521079659461975},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.4783341884613037},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.44824087619781494},{"id":"https://openalex.org/keywords/meaning","display_name":"Meaning (existential)","score":0.44574180245399475},{"id":"https://openalex.org/keywords/knowledge-representation-and-reasoning","display_name":"Knowledge representation and reasoning","score":0.4209800958633423},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4114094376564026},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.376188188791275},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3306993246078491},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.18200799822807312},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17864277958869934},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.13336482644081116},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.10353311896324158},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09433972835540771}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8288353681564331},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.7677748799324036},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6524144411087036},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.608587920665741},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.5942302942276001},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5410628914833069},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.5087226033210754},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.4999070167541504},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.4968891441822052},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.49521079659461975},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.4783341884613037},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.44824087619781494},{"id":"https://openalex.org/C2780876879","wikidata":"https://www.wikidata.org/wiki/Q3054749","display_name":"Meaning (existential)","level":2,"score":0.44574180245399475},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.4209800958633423},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4114094376564026},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.376188188791275},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3306993246078491},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.18200799822807312},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17864277958869934},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.13336482644081116},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.10353311896324158},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09433972835540771},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005823","descriptor_name":"Genetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005823","descriptor_name":"Genetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005823","descriptor_name":"Genetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1186/1471-2105-12-325","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-325","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-325","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21819553","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21819553","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2173816","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3166943","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:e3ecad241834417c9eb2dff2681dfd99","is_oa":true,"landing_page_url":"https://doaj.org/article/e3ecad241834417c9eb2dff2681dfd99","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 325 (2011)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/29685860","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/How_the_Gene_Ontology_Evolves/29685860","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:ore.exeter.ac.uk:10871/9244","is_oa":true,"landing_page_url":"http://hdl.handle.net/10871/9244","pdf_url":null,"source":{"id":"https://openalex.org/S4306401998","display_name":"Open Research Exeter (University of Exeter)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I23923803","host_organization_name":"University of Exeter","host_organization_lineage":["https://openalex.org/I23923803"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/305060","is_oa":true,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/305060","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"doi:10.17863/cam.52142","is_oa":true,"landing_page_url":"https://doi.org/10.17863/cam.52142","pdf_url":null,"source":{"id":"https://openalex.org/S7407050737","display_name":"Apollo","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-325","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-325","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-325","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1726331997","display_name":null,"funder_award_id":"ES/F024738/1","funder_id":"https://openalex.org/F4320334630","funder_display_name":"Economic and Social Research Council"},{"id":"https://openalex.org/G2216474362","display_name":"ESRC Centre for Genomics in Society (Egenis)","funder_award_id":"ES/F024738/1","funder_id":"https://openalex.org/F4320334630","funder_display_name":"Economic and Social Research Council"},{"id":"https://openalex.org/G7617805653","display_name":null,"funder_award_id":"P41 HG22073","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320334630","display_name":"Economic and Social Research Council","ror":"https://ror.org/03n0ht308"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2061017626.pdf","grobid_xml":"https://content.openalex.org/works/W2061017626.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W587240861","https://openalex.org/W1236321187","https://openalex.org/W1527927437","https://openalex.org/W1969271108","https://openalex.org/W2074512572","https://openalex.org/W2082460216","https://openalex.org/W2091729411","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2109783063","https://openalex.org/W2113142309","https://openalex.org/W2115064050","https://openalex.org/W2117844868","https://openalex.org/W2135967338","https://openalex.org/W2155630797","https://openalex.org/W2157261429","https://openalex.org/W2419637786","https://openalex.org/W2604823638","https://openalex.org/W2916147039","https://openalex.org/W4234895322","https://openalex.org/W4247469419"],"related_works":["https://openalex.org/W26549824","https://openalex.org/W2732632690","https://openalex.org/W1506177826","https://openalex.org/W72173000","https://openalex.org/W2726617685","https://openalex.org/W2357775360","https://openalex.org/W2365397974","https://openalex.org/W2376385420","https://openalex.org/W2066281582","https://openalex.org/W2396086199"],"abstract_inverted_index":{"BACKGROUND:":[0],"Maintaining":[1],"a":[2,143,151],"bio-ontology":[3],"in":[4,38,64,84,135,197,201,205],"the":[5,36,42,65,68,75,78,97,100,111,114,132,140,163,198],"long":[6],"term":[7],"requires":[8,162],"improving":[9],"and":[10,103,109,173,182,209],"updating":[11],"its":[12],"contents":[13],"so":[14],"that":[15,95,191],"it":[16,188],"adequately":[17],"captures":[18],"what":[19],"is":[20,87,180,189],"known":[21],"about":[22],"biological":[23],"phenomena.":[24],"This":[25,129],"paper":[26],"illustrates":[27,131],"how":[28,85,177],"these":[29],"processes":[30,123],"are":[31,58,203],"carried":[32],"out,":[33],"by":[34,125],"studying":[35],"ways":[37],"which":[39,161],"curators":[40,193],"at":[41],"Gene":[43],"Ontology":[44,146],"have":[45],"hitherto":[46],"incorporated":[47],"new":[48,93],"knowledge":[49,155,179],"into":[50,168],"their":[51,104],"resource.":[52],"RESULTS:":[53],"Five":[54],"types":[55],"of":[56,70,77,80,99,113,116,142,154,165,171,176],"circumstances":[57],"singled":[59],"out":[60],"as":[61,157],"warranting":[62],"changes":[63],"ontology:":[66],"(1)":[67],"emergence":[69],"anomalies":[71],"within":[72],"GO;":[73,81],"(2)":[74],"extension":[76,112],"scope":[79],"(3)":[82],"divergence":[83],"terminology":[86],"used":[88,102,118],"across":[89],"user":[90],"communities;":[91],"(4)":[92],"discoveries":[94],"change":[96],"meaning":[98],"terms":[101],"relations":[105,117],"to":[106,119,139,149],"each":[107],"other;":[108],"(5)":[110],"range":[115],"link":[120],"entities":[121],"or":[122],"described":[124],"GO":[126],"terms.":[127],"CONCLUSION:":[128],"study":[130],"difficulties":[133],"involved":[134,204],"applying":[136],"general":[137,166],"standards":[138],"development":[141],"specific":[144,169],"ontology.":[145],"curation":[147],"aims":[148],"produce":[150],"faithful":[152],"representation":[153],"domains":[156],"they":[158],"keep":[159],"developing,":[160],"translation":[164],"guidelines":[167],"representations":[170],"reality":[172],"an":[174],"understanding":[175],"scientific":[178,199],"produced":[181],"constantly":[183],"updated.":[184],"In":[185],"this":[186],"context,":[187],"important":[190],"trained":[192],"with":[194],"technical":[195],"expertise":[196],"field(s)":[200],"question":[202],"supervising":[206],"ontology":[207],"shifts":[208],"identifying":[210],"inaccuracies.":[211]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":10}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
