{"id":"https://openalex.org/W2034246811","doi":"https://doi.org/10.1186/1471-2105-12-320","title":"A regression system for estimation of errors introduced by confocal imaging into gene expression data in situ","display_name":"A regression system for estimation of errors introduced by confocal imaging into gene expression data in situ","publication_year":2011,"publication_date":"2011-08-04","ids":{"openalex":"https://openalex.org/W2034246811","doi":"https://doi.org/10.1186/1471-2105-12-320","mag":"2034246811","pmid":"https://pubmed.ncbi.nlm.nih.gov/21816093"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-320","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-320","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-320","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-320","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048711176","display_name":"Ekaterina Myasnikova","orcid":"https://orcid.org/0000-0001-6301-1012"},"institutions":[{"id":"https://openalex.org/I212220629","display_name":"Peter the Great St. Petersburg Polytechnic University","ror":"https://ror.org/02x91aj62","country_code":"RU","type":"education","lineage":["https://openalex.org/I212220629"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Ekaterina Myasnikova","raw_affiliation_strings":["Department of Computational Biology, Center for Advanced Studies, St.Petersburg State Polytechnical University, St.Petersburg, 195251, Russia. myasnikova@spbcas.ru","Department of Computational Biology, Center for Advanced Studies, St. Petersburg State Polytechnical University, St. Petersburg, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Biology, Center for Advanced Studies, St.Petersburg State Polytechnical University, St.Petersburg, 195251, Russia. myasnikova@spbcas.ru","institution_ids":["https://openalex.org/I212220629"]},{"raw_affiliation_string":"Department of Computational Biology, Center for Advanced Studies, St. Petersburg State Polytechnical University, St. Petersburg, Russia","institution_ids":["https://openalex.org/I212220629"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046574147","display_name":"Svetlana Surkova","orcid":"https://orcid.org/0000-0002-9016-4732"},"institutions":[{"id":"https://openalex.org/I212220629","display_name":"Peter the Great St. Petersburg Polytechnic University","ror":"https://ror.org/02x91aj62","country_code":"RU","type":"education","lineage":["https://openalex.org/I212220629"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Svetlana Surkova","raw_affiliation_strings":["Department of Computational Biology, Center for Advanced Studies, St.Petersburg State Polytechnical University, St.Petersburg, 195251, Russia","Department of Computational Biology, Center for Advanced Studies, St. Petersburg State Polytechnical University, St. Petersburg, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Biology, Center for Advanced Studies, St.Petersburg State Polytechnical University, St.Petersburg, 195251, Russia","institution_ids":["https://openalex.org/I212220629"]},{"raw_affiliation_string":"Department of Computational Biology, Center for Advanced Studies, St. Petersburg State Polytechnical University, St. Petersburg, Russia","institution_ids":["https://openalex.org/I212220629"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050094919","display_name":"Grigory Stein","orcid":"https://orcid.org/0000-0003-0455-9031"},"institutions":[{"id":"https://openalex.org/I4210104940","display_name":"Institute of Cytology","ror":"https://ror.org/01p3q4q56","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210104940","https://openalex.org/I4210129690"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Grigory Stein","raw_affiliation_strings":["Confocal Microscopy and Image Processing Group, Institute of Cytology RAS, St.Petersburg, 194064, Russia","Confocal Microscopy and Image Processing Group, Institute of Cytology RAS, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Confocal Microscopy and Image Processing Group, Institute of Cytology RAS, St.Petersburg, 194064, Russia","institution_ids":["https://openalex.org/I4210104940"]},{"raw_affiliation_string":"Confocal Microscopy and Image Processing Group, Institute of Cytology RAS, Russia","institution_ids":["https://openalex.org/I4210104940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053438171","display_name":"Ivan A. Pisarev","orcid":"https://orcid.org/0000-0001-9548-3946"},"institutions":[{"id":"https://openalex.org/I212220629","display_name":"Peter the Great St. Petersburg Polytechnic University","ror":"https://ror.org/02x91aj62","country_code":"RU","type":"education","lineage":["https://openalex.org/I212220629"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Andrei Pisarev","raw_affiliation_strings":["Department of Computational Biology, Center for Advanced Studies, St.Petersburg State Polytechnical University, St.Petersburg, 195251, Russia","Department of Computational Biology, Center for Advanced Studies, St. Petersburg State Polytechnical University, St. Petersburg, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Biology, Center for Advanced Studies, St.Petersburg State Polytechnical University, St.Petersburg, 195251, Russia","institution_ids":["https://openalex.org/I212220629"]},{"raw_affiliation_string":"Department of Computational Biology, Center for Advanced Studies, St. Petersburg State Polytechnical University, St. Petersburg, Russia","institution_ids":["https://openalex.org/I212220629"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067770825","display_name":"Maria Samsonova","orcid":"https://orcid.org/0000-0003-2530-0395"},"institutions":[{"id":"https://openalex.org/I212220629","display_name":"Peter the Great St. Petersburg Polytechnic University","ror":"https://ror.org/02x91aj62","country_code":"RU","type":"education","lineage":["https://openalex.org/I212220629"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Maria Samsonova","raw_affiliation_strings":["Department of Computational Biology, Center for Advanced Studies, St.Petersburg State Polytechnical University, St.Petersburg, 195251, Russia","Department of Computational Biology, Center for Advanced Studies, St. Petersburg State Polytechnical University, St. Petersburg, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Biology, Center for Advanced Studies, St.Petersburg State Polytechnical University, St.Petersburg, 195251, Russia","institution_ids":["https://openalex.org/I212220629"]},{"raw_affiliation_string":"Department of Computational Biology, Center for Advanced Studies, St. Petersburg State Polytechnical University, St. Petersburg, Russia","institution_ids":["https://openalex.org/I212220629"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5048711176"],"corresponding_institution_ids":["https://openalex.org/I212220629"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7051,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.80932634,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"12","issue":"1","first_page":"320","last_page":"320"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.5795999765396118,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.5795999765396118,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.1598999947309494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.026599999517202377,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/confocal","display_name":"Confocal","score":0.6277254819869995},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6186440587043762},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5910381078720093},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5173180103302002},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.46124619245529175},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.42970699071884155},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.42275458574295044},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.4181510806083679},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.22745898365974426},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.16353541612625122},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.11104792356491089}],"concepts":[{"id":"https://openalex.org/C136009344","wikidata":"https://www.wikidata.org/wiki/Q336201","display_name":"Confocal","level":2,"score":0.6277254819869995},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6186440587043762},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5910381078720093},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5173180103302002},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.46124619245529175},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.42970699071884155},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.42275458574295044},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.4181510806083679},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.22745898365974426},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.16353541612625122},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.11104792356491089},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001756","descriptor_name":"Blastoderm","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001756","descriptor_name":"Blastoderm","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001756","descriptor_name":"Blastoderm","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001756","descriptor_name":"Blastoderm","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-12-320","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-320","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-320","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21816093","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21816093","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:c3fdaa9789444784881c39b075733f49","is_oa":true,"landing_page_url":"https://doaj.org/article/c3fdaa9789444784881c39b075733f49","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 320 (2011)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3169536","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3169536","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-320","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-320","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-320","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7099999785423279,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[{"id":"https://openalex.org/G640898906","display_name":null,"funder_award_id":"R01 RR007801","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G7640301240","display_name":null,"funder_award_id":"RR07801","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G8375956775","display_name":null,"funder_award_id":"RR07801","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320321079","display_name":"Russian Foundation for Basic Research","ror":"https://ror.org/02mh1ke95"},{"id":"https://openalex.org/F4320331904","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2034246811.pdf","grobid_xml":"https://content.openalex.org/works/W2034246811.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W10991292","https://openalex.org/W1601798363","https://openalex.org/W1779718467","https://openalex.org/W1991927908","https://openalex.org/W2048089231","https://openalex.org/W2057230078","https://openalex.org/W2105293708","https://openalex.org/W2152929312","https://openalex.org/W2165346505"],"related_works":["https://openalex.org/W2016153552","https://openalex.org/W3102476392","https://openalex.org/W2045071200","https://openalex.org/W2027241547","https://openalex.org/W4297827670","https://openalex.org/W2017989033","https://openalex.org/W1983219023","https://openalex.org/W2133889213","https://openalex.org/W2077580985","https://openalex.org/W1966090424"],"abstract_inverted_index":{"BACKGROUND:":[0],"Accuracy":[1],"of":[2,20,35,45,54,62,69,88,91,111,158,168,191,236,260,285],"the":[3,28,36,42,51,76,80,84,106,109,113,118,127,137,141,154,176,194,205,234,239,254,261,266,271,286],"data":[4,77,138,195,240,274],"extracted":[5,78,139],"from":[6,79,140,161,242,276,298],"two-dimensional":[7],"confocal":[8,21,114,244],"images":[9,31,159,284],"is":[10,32,103,122,151,213,265],"limited":[11],"due":[12],"to":[13,26,49,232,268,282,292],"experimental":[14],"errors":[15,74,92,192,237,272],"that":[16],"arise":[17],"in":[18,30,136,193,200,204,238,273],"course":[19],"scanning.":[22],"The":[23,149,180,210],"common":[24],"way":[25],"reduce":[27],"noise":[29],"sequential":[33],"scanning":[34,129],"same":[37],"specimen":[38],"several":[39],"times":[40],"with":[41,117],"subsequent":[43],"averaging":[44],"multiple":[46],"frames.":[47],"Attempts":[48],"increase":[50],"dynamical":[52,288],"range":[53,289],"an":[55],"image":[56,143,174,245,255],"by":[57,126],"setting":[58],"too":[59],"high":[60,183],"values":[61],"microscope":[63,250],"PMT":[64,169],"parameters":[65,251],"may":[66],"cause":[67],"clipping":[68],"single":[70],"frames":[71],"and":[72,86,171,186,230,290],"introduce":[73],"into":[75],"averaged":[81,119,142],"images.":[82],"For":[83],"estimation":[85],"correction":[87,190],"this":[89],"kind":[90],"a":[93,146,216,227,243],"method":[94,107,212],"based":[95,246],"on":[96,153,196,247],"censoring":[97],"technique":[98],"(Myasnikova":[99],"et":[100],"al.,":[101],"2009)":[102],"used.":[104],"However,":[105],"requires":[108],"availability":[110],"all":[112,175],"scans":[115,177],"along":[116],"image,":[120],"which":[121],"normally":[123],"not":[124],"provided":[125],"standard":[128],"procedure.":[130],"RESULTS:":[131],"To":[132],"predict":[133,233],"error":[134],"size":[135],"we":[144],"developed":[145,262],"regression":[147,228],"system.":[148],"system":[150,181,229,264],"trained":[152],"learning":[155],"sample":[156],"composed":[157],"obtained":[160,241,275],"three":[162],"different":[163,166],"microscopes":[164],"at":[165,222],"combinations":[167],"parameters,":[170],"for":[172,189,253],"each":[173],"are":[178],"saved.":[179],"demonstrates":[182],"prediction":[184,211,263],"accuracy":[185],"was":[187],"applied":[188],"segmentation":[197],"gene":[198],"expression":[199],"Drosophila":[201],"blastoderm":[202],"stored":[203],"FlyEx":[206],"database":[207],"(http://urchin.spbcas.ru/flyex/,":[208],"http://flyex.uchicago.edu/flyex/).":[209],"realized":[214],"as":[215],"software":[217,231],"tool":[218],"CorrectPattern":[219],"freely":[220],"available":[221],"http://urchin.spbcas.ru/asp/2011/emm/.":[223],"CONCLUSIONS:":[224],"We":[225],"created":[226],"magnitude":[235],"information":[248,297],"about":[249],"used":[252],"acquisition.":[256],"An":[257],"important":[258],"advantage":[259],"possibility":[267],"accurately":[269],"correct":[270],"strongly":[277],"clipped":[278],"images,":[279],"thereby":[280],"allowing":[281],"obtain":[283],"higher":[287],"thus":[291],"extract":[293],"more":[294],"detailed":[295],"quantitative":[296],"them.":[299]},"counts_by_year":[{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
