{"id":"https://openalex.org/W2129511910","doi":"https://doi.org/10.1186/1471-2105-12-293","title":"FAAST: Flow-space Assisted Alignment Search Tool","display_name":"FAAST: Flow-space Assisted Alignment Search Tool","publication_year":2011,"publication_date":"2011-07-19","ids":{"openalex":"https://openalex.org/W2129511910","doi":"https://doi.org/10.1186/1471-2105-12-293","mag":"2129511910"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-293","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-293","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-293","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-293","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063107732","display_name":"Fredrik Lysholm","orcid":null},"institutions":[{"id":"https://openalex.org/I4210103991","display_name":"Swedish e-Science Research Centre","ror":"https://ror.org/01e59yk92","country_code":"SE","type":"facility","lineage":["https://openalex.org/I4210103991"]},{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Fredrik Lysholm","raw_affiliation_strings":["IFM Bioinformatics and SeRC (Swedish e-Science Research Centre), Link\u00f6ping University, S-581 83, Link\u00f6ping, Sweden","IFM Bioinformatics and SeRC (Swedish e-Science Research Centre), Link\u00f6ping University, Link\u00f6ping, Sweden"],"affiliations":[{"raw_affiliation_string":"IFM Bioinformatics and SeRC (Swedish e-Science Research Centre), Link\u00f6ping University, S-581 83, Link\u00f6ping, Sweden","institution_ids":["https://openalex.org/I102134673","https://openalex.org/I4210103991"]},{"raw_affiliation_string":"IFM Bioinformatics and SeRC (Swedish e-Science Research Centre), Link\u00f6ping University, Link\u00f6ping, Sweden","institution_ids":["https://openalex.org/I4210103991","https://openalex.org/I102134673"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006437281","display_name":"Bj\u00f6rn Andersson","orcid":"https://orcid.org/0000-0002-4624-0259"},"institutions":[{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Bj\u00f6rn Andersson","raw_affiliation_strings":["Department of Cell and Molecular Biology, Science for Life Laboratory, Karolinska Institutet, S-171 77, Stockholm, Sweden","Department of Cell and Molecular Biology, Science for Life Laboratory, Karolinska Institutet, Stockholm, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Cell and Molecular Biology, Science for Life Laboratory, Karolinska Institutet, S-171 77, Stockholm, Sweden","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I28166907"]},{"raw_affiliation_string":"Department of Cell and Molecular Biology, Science for Life Laboratory, Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I28166907"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052620448","display_name":"Bengt Persson","orcid":"https://orcid.org/0000-0003-3165-5344"},"institutions":[{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I4210103991","display_name":"Swedish e-Science Research Centre","ror":"https://ror.org/01e59yk92","country_code":"SE","type":"facility","lineage":["https://openalex.org/I4210103991"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Bengt Persson","raw_affiliation_strings":["Department of Cell and Molecular Biology, Science for Life Laboratory, Karolinska Institutet, S-171 77, Stockholm, Sweden","IFM Bioinformatics and SeRC (Swedish e-Science Research Centre), Link\u00f6ping University, S-581 83, Link\u00f6ping, Sweden","IFM Bioinformatics and SeRC (Swedish e-Science Research Centre), Link\u00f6ping University, Link\u00f6ping, Sweden","Department of Cell and Molecular Biology, Science for Life Laboratory, Karolinska Institutet, Stockholm, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Cell and Molecular Biology, Science for Life Laboratory, Karolinska Institutet, S-171 77, Stockholm, Sweden","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I28166907"]},{"raw_affiliation_string":"IFM Bioinformatics and SeRC (Swedish e-Science Research Centre), Link\u00f6ping University, S-581 83, Link\u00f6ping, Sweden","institution_ids":["https://openalex.org/I102134673","https://openalex.org/I4210103991"]},{"raw_affiliation_string":"IFM Bioinformatics and SeRC (Swedish e-Science Research Centre), Link\u00f6ping University, Link\u00f6ping, Sweden","institution_ids":["https://openalex.org/I4210103991","https://openalex.org/I102134673"]},{"raw_affiliation_string":"Department of Cell and Molecular Biology, Science for Life Laboratory, Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I28166907"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5063107732"],"corresponding_institution_ids":["https://openalex.org/I102134673","https://openalex.org/I4210103991"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.0624,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.76386821,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"12","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11879","display_name":"Protist diversity and phylogeny","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.722890317440033},{"id":"https://openalex.org/keywords/pyrosequencing","display_name":"Pyrosequencing","score":0.6113511323928833},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5089724063873291},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.5039781928062439},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5016374588012695},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.4803272783756256},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.42756152153015137},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.39925065636634827},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.37596264481544495},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23312309384346008},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18635928630828857},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12488752603530884},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08904615044593811}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.722890317440033},{"id":"https://openalex.org/C125009961","wikidata":"https://www.wikidata.org/wiki/Q2342248","display_name":"Pyrosequencing","level":3,"score":0.6113511323928833},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5089724063873291},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.5039781928062439},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5016374588012695},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.4803272783756256},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.42756152153015137},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.39925065636634827},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.37596264481544495},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23312309384346008},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18635928630828857},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12488752603530884},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08904615044593811},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-12-293","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-293","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-293","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:DiVA.org:liu-70511","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:liu:diva-70511","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article in journal"},{"id":"pmh:oai:doaj.org/article:46ce3951d59c4810910f185869435180","is_oa":true,"landing_page_url":"https://doaj.org/article/46ce3951d59c4810910f185869435180","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 293 (2011)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2237463","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3228549","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-293","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-293","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-293","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.8600000143051147}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322225","display_name":"Link\u00f6pings Universitet","ror":"https://ror.org/05ynxx418"},{"id":"https://openalex.org/F4320322315","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691"},{"id":"https://openalex.org/F4320322581","display_name":"Vetenskapsr\u00e5det","ror":"https://ror.org/03zttf063"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2129511910.pdf","grobid_xml":"https://content.openalex.org/works/W2129511910.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W2013258751","https://openalex.org/W2015292449","https://openalex.org/W2029195137","https://openalex.org/W2045419533","https://openalex.org/W2055043387","https://openalex.org/W2068448872","https://openalex.org/W2068453849","https://openalex.org/W2069992928","https://openalex.org/W2074231493","https://openalex.org/W2087064593","https://openalex.org/W2090087224","https://openalex.org/W2128114769","https://openalex.org/W2142619120","https://openalex.org/W2153993827","https://openalex.org/W2158714788"],"related_works":["https://openalex.org/W2467173323","https://openalex.org/W3183986862","https://openalex.org/W2555315841","https://openalex.org/W2596471045","https://openalex.org/W2389726847","https://openalex.org/W3047758698","https://openalex.org/W2389094034","https://openalex.org/W2350198651","https://openalex.org/W2124984338","https://openalex.org/W2129511910"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":19},{"year":2022,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":2}],"updated_date":"2026-03-09T08:58:05.943551","created_date":"2025-10-10T00:00:00"}
