{"id":"https://openalex.org/W2016976521","doi":"https://doi.org/10.1186/1471-2105-12-257","title":"BioAssay Ontology (BAO): a semantic description of bioassays and high-throughput screening results","display_name":"BioAssay Ontology (BAO): a semantic description of bioassays and high-throughput screening results","publication_year":2011,"publication_date":"2011-06-24","ids":{"openalex":"https://openalex.org/W2016976521","doi":"https://doi.org/10.1186/1471-2105-12-257","mag":"2016976521","pmid":"https://pubmed.ncbi.nlm.nih.gov/21702939"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-257","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-257","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-257","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-257","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053042895","display_name":"Ubbo Visser","orcid":"https://orcid.org/0000-0002-1254-2566"},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ubbo Visser","raw_affiliation_strings":["Department of Computer Science, University of Miami, Coral Gables, FL, USA","Department of Computer Science, University of Miami, Coral Gables, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Miami, Coral Gables, FL, USA","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Department of Computer Science, University of Miami, Coral Gables, USA","institution_ids":["https://openalex.org/I145608581"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011850830","display_name":"Saminda Abeyruwan","orcid":null},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Saminda Abeyruwan","raw_affiliation_strings":["Department of Computer Science, University of Miami, Coral Gables, FL, USA","Department of Computer Science, University of Miami, Coral Gables, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Miami, Coral Gables, FL, USA","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Department of Computer Science, University of Miami, Coral Gables, USA","institution_ids":["https://openalex.org/I145608581"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001398376","display_name":"Uma D. Vempati","orcid":null},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Uma Vempati","raw_affiliation_strings":["Center for Computational Science, University of Miami, Miami, FL, USA","Center for Computational Science, University of Miami, Miami, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Science, University of Miami, Miami, FL, USA","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Center for Computational Science, University of Miami, Miami, USA","institution_ids":["https://openalex.org/I145608581"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110013942","display_name":"Robin P. Smith","orcid":null},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robin P Smith","raw_affiliation_strings":["Center for Computational Science, University of Miami, Miami, FL, USA","Center for Computational Science, University of Miami, Miami, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Science, University of Miami, Miami, FL, USA","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Center for Computational Science, University of Miami, Miami, USA","institution_ids":["https://openalex.org/I145608581"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062194249","display_name":"Vance Lemmon","orcid":"https://orcid.org/0000-0003-3550-7576"},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]},{"id":"https://openalex.org/I4210157890","display_name":"Neurological Surgery","ror":"https://ror.org/04r0gp612","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210157890"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vance Lemmon","raw_affiliation_strings":["Center for Computational Science, University of Miami, Miami, FL, USA","The Miami Project to Cure Paralysis, Department of Neurological Surgery, University of Miami, Miami, FL, USA","Center for Computational Science, University of Miami, Miami, USA","The Miami Project to Cure Paralysis, Department of Neurological Surgery, University of Miami, Miami, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Science, University of Miami, Miami, FL, USA","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"The Miami Project to Cure Paralysis, Department of Neurological Surgery, University of Miami, Miami, FL, USA","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Center for Computational Science, University of Miami, Miami, USA","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"The Miami Project to Cure Paralysis, Department of Neurological Surgery, University of Miami, Miami, USA","institution_ids":["https://openalex.org/I145608581","https://openalex.org/I4210157890"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013636406","display_name":"Stephan C. Sch\u00fcrer","orcid":"https://orcid.org/0000-0001-7180-0978"},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Stephan C Sch\u00fcrer","raw_affiliation_strings":["Center for Computational Science, University of Miami, Miami, FL, USA","Department of Molecular and Cellular Pharmacology, Miller School of Medicine, University of Miami, Miami, FL, USA","Department of Molecular and Cellular Pharmacology, Miller School of Medicine, University of Miami, Miami, USA","Center for Computational Science, University of Miami, Miami, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Science, University of Miami, Miami, FL, USA","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Department of Molecular and Cellular Pharmacology, Miller School of Medicine, University of Miami, Miami, FL, USA","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Department of Molecular and Cellular Pharmacology, Miller School of Medicine, University of Miami, Miami, USA","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Center for Computational Science, University of Miami, Miami, USA","institution_ids":["https://openalex.org/I145608581"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5013636406"],"corresponding_institution_ids":["https://openalex.org/I145608581"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":5.5866,"has_fulltext":true,"cited_by_count":132,"citation_normalized_percentile":{"value":0.96868323,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"12","issue":"1","first_page":"257","last_page":"257"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7896999716758728,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7896999716758728,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.053199999034404755,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.03139999881386757,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7845444679260254},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7777081727981567},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.5445161461830139},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5084501504898071},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.48623910546302795},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3779011368751526},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3597484827041626},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.26171934604644775}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7845444679260254},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7777081727981567},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.5445161461830139},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5084501504898071},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.48623910546302795},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3779011368751526},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3597484827041626},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.26171934604644775},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001681","descriptor_name":"Biological Assay","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001681","descriptor_name":"Biological Assay","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001681","descriptor_name":"Biological Assay","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-12-257","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-257","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-257","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21702939","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21702939","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:5b84ffce7ec54eba99becd77e85df74b","is_oa":false,"landing_page_url":"https://doaj.org/article/5b84ffce7ec54eba99becd77e85df74b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 257 (2011)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2157374","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3149580","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-257","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-257","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-257","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.49000000953674316,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309249","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2016976521.pdf","grobid_xml":"https://content.openalex.org/works/W2016976521.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W58140099","https://openalex.org/W109947125","https://openalex.org/W150870403","https://openalex.org/W153886719","https://openalex.org/W178112518","https://openalex.org/W192221291","https://openalex.org/W311418300","https://openalex.org/W852643139","https://openalex.org/W1487986258","https://openalex.org/W1522368393","https://openalex.org/W1529522905","https://openalex.org/W1549103420","https://openalex.org/W1576479172","https://openalex.org/W1577231857","https://openalex.org/W1606656316","https://openalex.org/W1622055787","https://openalex.org/W1640748652","https://openalex.org/W1751493610","https://openalex.org/W1806244932","https://openalex.org/W1995213245","https://openalex.org/W1999773781","https://openalex.org/W2010386108","https://openalex.org/W2020541351","https://openalex.org/W2024243714","https://openalex.org/W2026743036","https://openalex.org/W2062558911","https://openalex.org/W2080886752","https://openalex.org/W2101751841","https://openalex.org/W2103017472","https://openalex.org/W2109464129","https://openalex.org/W2113142309","https://openalex.org/W2117682071","https://openalex.org/W2142240642","https://openalex.org/W2144303444","https://openalex.org/W2145465694","https://openalex.org/W2149378423","https://openalex.org/W2164947858","https://openalex.org/W2242459625","https://openalex.org/W2396067683","https://openalex.org/W2495199414","https://openalex.org/W3156599292","https://openalex.org/W4242385327","https://openalex.org/W4285719527","https://openalex.org/W6602499392"],"related_works":["https://openalex.org/W2403539072","https://openalex.org/W2610995041","https://openalex.org/W2354489606","https://openalex.org/W3104418915","https://openalex.org/W2360498695","https://openalex.org/W4386395399","https://openalex.org/W4386246514","https://openalex.org/W3203979266","https://openalex.org/W153599042","https://openalex.org/W2003333417"],"abstract_inverted_index":{"BACKGROUND:":[0],"High-throughput":[1],"screening":[2,66,128],"(HTS)":[3],"is":[4,26,51,179],"one":[5],"of":[6,18,36,61,91,145,163,174,216,234,271],"the":[7,16,77,83,87,92,120,143,172,183,214,232,263],"main":[8],"strategies":[9],"to":[10,30,44,71,81,96,104,113,123,212,241],"identify":[11],"novel":[12],"entry":[13],"points":[14],"for":[15,142,255,265],"development":[17],"small":[19],"molecule":[20],"chemical":[21],"probes":[22],"and":[23,25,59,65,75,79,85,107,127,148,150,168,204,258,262],"drugs":[24],"now":[27],"commonly":[28],"accessible":[29],"public":[31,45,88,98],"sector":[32,99],"research.":[33],"Large":[34],"amounts":[35],"data":[37,110,149,197],"generated":[38],"in":[39,208,221],"HTS":[40,63,100,109,125,146,165,260],"campaigns":[41],"are":[42,111,239,246],"submitted":[43],"repositories":[46],"such":[47],"as":[48,139,151],"PubChem,":[49],"which":[50],"growing":[52],"at":[53,182],"an":[54],"exponential":[55],"rate.":[56],"The":[57,134,177,223],"diversity":[58],"quantity":[60],"available":[62,180],"assays":[64,147],"results":[67,129,237],"pose":[68],"enormous":[69],"challenges":[70],"organizing,":[72],"standardizing,":[73],"integrating,":[74],"analyzing":[76,259],"datasets":[78,261],"thus":[80,251],"maximize":[82],"scientific":[84],"ultimately":[86],"health":[89],"impact":[90],"huge":[93],"investments":[94],"made":[95],"implement":[97],"capabilities.":[101],"Novel":[102],"approaches":[103],"organize,":[105],"standardize":[106],"access":[108],"required":[112],"address":[114],"these":[115],"challenges.":[116],"RESULTS:":[117],"We":[118],"developed":[119],"first":[121],"ontology":[122,178],"describe":[124],"experiments":[126],"using":[130],"expressive":[131],"description":[132],"logic.":[133],"BioAssay":[135],"Ontology":[136],"(BAO)":[137],"serves":[138],"a":[140,152,189,200,206,242],"foundation":[141],"standardization":[144],"semantic":[153,226],"knowledge":[154,167,219,268],"model.":[155],"In":[156],"this":[157,175],"paper":[158],"we":[159,169,194],"show":[160],"important":[161],"examples":[162,224],"formalizing":[164],"domain":[166,218],"point":[170],"out":[171],"advantages":[173],"approach.":[176],"online":[181],"NCBO":[184],"bioportal":[185],"http://bioportal.bioontology.org/ontologies/44531.":[186],"CONCLUSIONS:":[187],"After":[188],"large":[190],"manual":[191],"curation":[192],"effort,":[193],"loaded":[195],"BAO-mapped":[196],"triples":[198],"into":[199],"RDF":[201],"database":[202],"store":[203],"used":[205],"reasoner":[207],"several":[209],"case":[210],"studies":[211],"demonstrate":[213],"benefits":[215],"formalized":[217],"representation":[220],"BAO.":[222],"illustrate":[225],"querying":[227],"capabilities":[228],"where":[229],"BAO":[230,250],"enables":[231],"retrieval":[233],"inferred":[235],"search":[236],"that":[238],"relevant":[240],"given":[243],"query,":[244],"but":[245],"not":[247],"explicitly":[248],"defined.":[249],"opens":[252],"new":[253,267],"functionality":[254],"annotating,":[256],"querying,":[257],"potential":[264],"discovering":[266],"by":[269],"means":[270],"inference.":[272]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":19},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":16}],"updated_date":"2026-05-09T13:55:54.758798","created_date":"2025-10-10T00:00:00"}
