{"id":"https://openalex.org/W2143660537","doi":"https://doi.org/10.1186/1471-2105-12-213","title":"Identifier mapping performance for integrating transcriptomics and proteomics experimental results","display_name":"Identifier mapping performance for integrating transcriptomics and proteomics experimental results","publication_year":2011,"publication_date":"2011-05-27","ids":{"openalex":"https://openalex.org/W2143660537","doi":"https://doi.org/10.1186/1471-2105-12-213","mag":"2143660537","pmid":"https://pubmed.ncbi.nlm.nih.gov/21619611"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-213","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-213","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-213","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-213","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109883106","display_name":"Roger Day","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Roger S Day","raw_affiliation_strings":["Department of Biomedical Informatics, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA. day01@pitt.edu","Department of Biomedical Informatics, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15261, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA. day01@pitt.edu","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15261, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005635050","display_name":"Kevin McDade","orcid":"https://orcid.org/0000-0002-7754-508X"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin K McDade","raw_affiliation_strings":["Department of Biomedical Informatics, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15261, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15261, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004781857","display_name":"Uma Chandran","orcid":"https://orcid.org/0000-0002-0817-9880"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Uma R Chandran","raw_affiliation_strings":["Department of Biomedical Informatics, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15261, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15261, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069553041","display_name":"Alex Lisovich","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex Lisovich","raw_affiliation_strings":["Department of Biomedical Informatics, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15261, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15261, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080595928","display_name":"Thomas P. Conrads","orcid":"https://orcid.org/0000-0003-4742-3281"},"institutions":[{"id":"https://openalex.org/I116530498","display_name":"Inova Health System","ror":"https://ror.org/04mrb6c22","country_code":"US","type":"funder","lineage":["https://openalex.org/I116530498"]},{"id":"https://openalex.org/I2800468613","display_name":"Inova Fairfax Hospital","ror":"https://ror.org/0212h5y77","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I116530498","https://openalex.org/I2800468613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas P Conrads","raw_affiliation_strings":["Women's Health Integrated Research Center at Inova Health System, Inova Fairfax Hospital Campus, 3300 Gallows Road, Falls Church, VA, 22042, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Women's Health Integrated Research Center at Inova Health System, Inova Fairfax Hospital Campus, 3300 Gallows Road, Falls Church, VA, 22042, USA","institution_ids":["https://openalex.org/I116530498","https://openalex.org/I2800468613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060699409","display_name":"Brian L. Hood","orcid":"https://orcid.org/0000-0002-2398-487X"},"institutions":[{"id":"https://openalex.org/I116530498","display_name":"Inova Health System","ror":"https://ror.org/04mrb6c22","country_code":"US","type":"funder","lineage":["https://openalex.org/I116530498"]},{"id":"https://openalex.org/I2800468613","display_name":"Inova Fairfax Hospital","ror":"https://ror.org/0212h5y77","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I116530498","https://openalex.org/I2800468613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian L Hood","raw_affiliation_strings":["Women's Health Integrated Research Center at Inova Health System, Inova Fairfax Hospital Campus, 3300 Gallows Road, Falls Church, VA, 22042, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Women's Health Integrated Research Center at Inova Health System, Inova Fairfax Hospital Campus, 3300 Gallows Road, Falls Church, VA, 22042, USA","institution_ids":["https://openalex.org/I116530498","https://openalex.org/I2800468613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5097884589","display_name":"VS Kumar Kolli","orcid":null},"institutions":[{"id":"https://openalex.org/I1321217177","display_name":"Windber Research Institute","ror":"https://ror.org/03w8j7142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321217177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"VS Kumar Kolli","raw_affiliation_strings":["Windber Research Institute, 620 Seventh Street, Windber, PA, 15963, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Windber Research Institute, 620 Seventh Street, Windber, PA, 15963, USA","institution_ids":["https://openalex.org/I1321217177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083829480","display_name":"David Kirchner","orcid":null},"institutions":[{"id":"https://openalex.org/I1321217177","display_name":"Windber Research Institute","ror":"https://ror.org/03w8j7142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321217177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Kirchner","raw_affiliation_strings":["Windber Research Institute, 620 Seventh Street, Windber, PA, 15963, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Windber Research Institute, 620 Seventh Street, Windber, PA, 15963, USA","institution_ids":["https://openalex.org/I1321217177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041052534","display_name":"Traci Litzi","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Traci Litzi","raw_affiliation_strings":["Division of Gynecologic Oncology, Walter Reed Army Medical Center, Washington, D.C, 20307, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Gynecologic Oncology, Walter Reed Army Medical Center, Washington, D.C, 20307, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010088272","display_name":"G. Larry Maxwell","orcid":"https://orcid.org/0000-0001-9136-2231"},"institutions":[{"id":"https://openalex.org/I116530498","display_name":"Inova Health System","ror":"https://ror.org/04mrb6c22","country_code":"US","type":"funder","lineage":["https://openalex.org/I116530498"]},{"id":"https://openalex.org/I2800468613","display_name":"Inova Fairfax Hospital","ror":"https://ror.org/0212h5y77","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I116530498","https://openalex.org/I2800468613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G Larry Maxwell","raw_affiliation_strings":["Division of Gynecologic Oncology, Walter Reed Army Medical Center, Washington, D.C, 20307, USA","Women's Health Integrated Research Center at Inova Health System, Inova Fairfax Hospital Campus, 3300 Gallows Road, Falls Church, VA, 22042, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Gynecologic Oncology, Walter Reed Army Medical Center, Washington, D.C, 20307, USA","institution_ids":[]},{"raw_affiliation_string":"Women's Health Integrated Research Center at Inova Health System, Inova Fairfax Hospital Campus, 3300 Gallows Road, Falls Church, VA, 22042, USA","institution_ids":["https://openalex.org/I116530498","https://openalex.org/I2800468613"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5109883106"],"corresponding_institution_ids":["https://openalex.org/I170201317"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.7747,"has_fulltext":true,"cited_by_count":165,"citation_normalized_percentile":{"value":0.83382673,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"12","issue":"1","first_page":"213","last_page":"213"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.842199981212616,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.842199981212616,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.035100001841783524,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.030700000002980232,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.8073909282684326},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.7931021451950073},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.6962708234786987},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5998413562774658},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.5288159847259521},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5188978314399719},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.5109319090843201},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.47336694598197937},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4451519250869751},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38710707426071167},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35815683007240295},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.34238576889038086},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3256920576095581},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3078780174255371},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22205182909965515},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14011099934577942},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.13800010085105896},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.10795411467552185}],"concepts":[{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.8073909282684326},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.7931021451950073},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.6962708234786987},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5998413562774658},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5288159847259521},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5188978314399719},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.5109319090843201},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.47336694598197937},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4451519250869751},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38710707426071167},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35815683007240295},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.34238576889038086},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3256920576095581},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3078780174255371},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22205182909965515},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14011099934577942},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.13800010085105896},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.10795411467552185},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004717","descriptor_name":"Endometrium","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004717","descriptor_name":"Endometrium","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004717","descriptor_name":"Endometrium","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016889","descriptor_name":"Endometrial Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016889","descriptor_name":"Endometrial Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016889","descriptor_name":"Endometrial Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-12-213","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-213","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-213","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21619611","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21619611","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:d-scholarship.pitt.edu:30055","is_oa":false,"landing_page_url":"https://d-scholarship.pitt.edu/30055/7/licence.txt","pdf_url":null,"source":{"id":"https://openalex.org/S4306402375","display_name":"D-Scholarship@Pitt (University of Pittsburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170201317","host_organization_name":"University of Pittsburgh","host_organization_lineage":["https://openalex.org/I170201317"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:doaj.org/article:ce567e4bd2ec4f89a43c1dd2968b89b5","is_oa":false,"landing_page_url":"https://doaj.org/article/ce567e4bd2ec4f89a43c1dd2968b89b5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 213 (2011)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2140299","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3124437","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-213","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-213","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-213","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320338297","display_name":"Telemedicine and Advanced Technology Research Center","ror":"https://ror.org/014pvr265"},{"id":"https://openalex.org/F4320338478","display_name":"U.S. Army Medical Research Acquisition Activity","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2143660537.pdf","grobid_xml":"https://content.openalex.org/works/W2143660537.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1494853941","https://openalex.org/W1554944419","https://openalex.org/W1566333899","https://openalex.org/W1974026819","https://openalex.org/W1993166459","https://openalex.org/W2014481298","https://openalex.org/W2041852635","https://openalex.org/W2042363992","https://openalex.org/W2059572899","https://openalex.org/W2106176263","https://openalex.org/W2107363136","https://openalex.org/W2119908867","https://openalex.org/W2120061581","https://openalex.org/W2122683221","https://openalex.org/W2125323026","https://openalex.org/W2132244795","https://openalex.org/W2134650984","https://openalex.org/W2146994504","https://openalex.org/W2148115950","https://openalex.org/W2148911704","https://openalex.org/W2152960199","https://openalex.org/W2158217645","https://openalex.org/W2161271012","https://openalex.org/W2171033594","https://openalex.org/W4285719527","https://openalex.org/W6633649508"],"related_works":["https://openalex.org/W24553703","https://openalex.org/W4211000692","https://openalex.org/W2116726748","https://openalex.org/W2288906059","https://openalex.org/W2098932404","https://openalex.org/W4376862128","https://openalex.org/W4296966554","https://openalex.org/W2030530458","https://openalex.org/W2546159719","https://openalex.org/W2296132555"],"abstract_inverted_index":{"BACKGROUND:":[0],"Studies":[1],"integrating":[2],"transcriptomic":[3],"data":[4,7,36,77,266],"with":[5,200],"proteomic":[6],"can":[8,19],"illuminate":[9],"the":[10,23,29,32,42,47,86,140,158,162,172,184,208,220,223],"proteome":[11],"more":[12],"clearly":[13],"than":[14],"either":[15],"separately.":[16],"Integromic":[17],"studies":[18],"deepen":[20],"understanding":[21],"of":[22,54,64,66,123,143,155,174,190,197,222],"dynamic":[24],"complex":[25],"regulatory":[26],"relationship":[27],"between":[28,41],"transcriptome":[30],"and":[31,72,116,127,182,212,230],"proteome.":[33],"Integrating":[34],"these":[35],"dictates":[37],"a":[38,82,152,194,217],"reliable":[39],"mapping":[40,102,105,148,159,189,224,262],"identifier":[43,67,101],"nomenclature":[44,68],"resultant":[45],"from":[46,146],"two":[48,234],"high-throughput":[49],"platforms.":[50],"However,":[51],"this":[52],"kind":[53],"analysis":[55],"is":[56],"well":[57,211],"known":[58],"to":[59,109,170,249,254],"be":[60],"hampered":[61],"by":[62],"lack":[63],"standardization":[65],"among":[69,157],"proteins,":[70],"genes,":[71],"microarray":[73],"probe":[74],"sets.":[75],"Therefore":[76],"integration":[78],"may":[79],"also":[80],"play":[81],"role":[83],"in":[84,258],"critiquing":[85],"fallible":[87],"gene":[88],"identifications":[89,112],"that":[90,187],"both":[91],"platforms":[92],"emit.":[93],"RESULTS:":[94],"We":[95,150],"compared":[96,139,183],"three":[97],"freely":[98],"available":[99],"internet-based":[100],"resources":[103,185,227],"for":[104,207,264],"UniProt":[106],"accessions":[107],"(ACCs)":[108],"Affymetrix":[110],"probesets":[111],"(IDs):":[113],"DAVID,":[114],"EnVision,":[115],"NetAffx.":[117],"Liquid":[118],"chromatography-tandem":[119],"mass":[120],"spectrometry":[121],"analyses":[122],"91":[124],"endometrial":[125],"cancer":[126],"7":[128],"noncancer":[129],"samples":[130],"generated":[131],"11,879":[132],"distinct":[133],"ACCs.":[134],"For":[135],"each":[136,147,175],"ACC,":[137],"we":[138,178],"retrieval":[141],"sets":[142],"probeset":[144],"IDs":[145],"resource.":[149],"confirmed":[151],"high":[153],"level":[154],"discrepancy":[156],"resources.":[160,225],"On":[161],"same":[163],"samples,":[164],"mRNA":[165],"expression":[166],"was":[167],"available.":[168],"Therefore,":[169],"evaluate":[171],"quality":[173],"ACC-to-probeset":[176],"match,":[177],"calculated":[179],"proteome-transcriptome":[180],"correlations,":[181],"presuming":[186],"better":[188],"identifiers":[191],"should":[192],"generate":[193],"higher":[195],"proportion":[196],"mapped":[198],"pairs":[199],"strong":[201],"inter-platform":[202],"correlations.":[203],"A":[204],"mixture":[205],"model":[206],"correlations":[209],"fitted":[210],"supported":[213],"regression":[214],"analysis,":[215],"providing":[216],"window":[218],"into":[219],"performance":[221,239],"The":[226,244],"have":[228],"added":[229],"dropped":[231],"matches":[232],"over":[233],"years,":[235],"but":[236],"their":[237],"overall":[238],"has":[240],"not":[241],"changed.":[242],"CONCLUSIONS:":[243],"methods":[245],"presented":[246],"here":[247],"serve":[248],"achieve":[250],"concrete":[251],"context-specific":[252],"insight,":[253],"support":[255],"well-informed":[256],"decisions":[257],"choosing":[259],"an":[260],"ID":[261],"strategy":[263],"\"omic\"":[265],"merging.":[267]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":27},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":73},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":6},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":2}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}