{"id":"https://openalex.org/W2091259397","doi":"https://doi.org/10.1186/1471-2105-12-191","title":"A Network of SCOP Hidden Markov Models and Its Analysis","display_name":"A Network of SCOP Hidden Markov Models and Its Analysis","publication_year":2011,"publication_date":"2011-05-23","ids":{"openalex":"https://openalex.org/W2091259397","doi":"https://doi.org/10.1186/1471-2105-12-191","mag":"2091259397","pmid":"https://pubmed.ncbi.nlm.nih.gov/21635719"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-191","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-191","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-191","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-191","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100741568","display_name":"Liqing Zhang","orcid":"https://orcid.org/0000-0001-7597-8503"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Liqing Zhang","raw_affiliation_strings":["Department of Computer Science, Virginia Tech, Blacksburg, VA 24061, USA. lqzhang@cs.vt.edu","Department of Computer Science, Virginia Tech, Blacksburg, VA, 24061, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Tech, Blacksburg, VA 24061, USA. lqzhang@cs.vt.edu","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Department of Computer Science, Virginia Tech, Blacksburg, VA, 24061, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068161656","display_name":"Layne T. Watson","orcid":"https://orcid.org/0000-0003-2009-107X"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Layne T Watson","raw_affiliation_strings":["Department of Computer Science, Virginia Tech, Blacksburg, VA, 24061, USA","Department of Mathematics, Virginia Tech, Blacksburg, VA, 24061, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Tech, Blacksburg, VA, 24061, USA","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Department of Mathematics, Virginia Tech, Blacksburg, VA, 24061, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057291575","display_name":"Lenwood S. Heath","orcid":"https://orcid.org/0000-0003-1608-431X"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lenwood S Heath","raw_affiliation_strings":["Department of Computer Science, Virginia Tech, Blacksburg, VA, 24061, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Tech, Blacksburg, VA, 24061, USA","institution_ids":["https://openalex.org/I859038795"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100741568"],"corresponding_institution_ids":["https://openalex.org/I859038795"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":2990,"currency":"USD","value_usd":2990},"fwci":0.1246,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.51564561,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"12","issue":"1","first_page":"191","last_page":"191"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.39160001277923584,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.39160001277923584,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.31369999051094055,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.05490000173449516,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.5512415766716003},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5350028276443481},{"id":"https://openalex.org/keywords/markov-model","display_name":"Markov model","score":0.49040794372558594},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.490057110786438},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48470211029052734},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.4690198302268982},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4219546616077423},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3547953963279724},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3508196473121643},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28998708724975586},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.23573821783065796},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2224532961845398},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11595067381858826},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09586521983146667}],"concepts":[{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.5512415766716003},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5350028276443481},{"id":"https://openalex.org/C163836022","wikidata":"https://www.wikidata.org/wiki/Q6771326","display_name":"Markov model","level":3,"score":0.49040794372558594},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.490057110786438},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48470211029052734},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.4690198302268982},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4219546616077423},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3547953963279724},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3508196473121643},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28998708724975586},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.23573821783065796},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2224532961845398},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11595067381858826},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09586521983146667},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-12-191","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-191","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-191","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21635719","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21635719","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3119068","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3119068","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:642fadad25694915a32fa9201eb3c72e","is_oa":false,"landing_page_url":"https://doaj.org/article/642fadad25694915a32fa9201eb3c72e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 191 (2011)","raw_type":"article"},{"id":"pmh:oai:vtechworks.lib.vt.edu:10919/18807","is_oa":true,"landing_page_url":"http://hdl.handle.net/10919/18807","pdf_url":null,"source":{"id":"https://openalex.org/S4306400248","display_name":"VTechWorks (Virginia Tech)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I859038795","host_organization_name":"Virginia Tech","host_organization_lineage":["https://openalex.org/I859038795"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article - Refereed"},{"id":"pmh:oai:vtechworks.lib.vt.edu:10919/18809","is_oa":true,"landing_page_url":"http://hdl.handle.net/10919/18809","pdf_url":null,"source":{"id":"https://openalex.org/S4306400248","display_name":"VTechWorks (Virginia Tech)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I859038795","host_organization_name":"Virginia Tech","host_organization_lineage":["https://openalex.org/I859038795"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-191","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-191","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-191","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1523888516","display_name":null,"funder_award_id":"FA9550-","funder_id":"https://openalex.org/F4320338279","funder_display_name":"Air Force Office of Scientific Research"},{"id":"https://openalex.org/G6213765475","display_name":null,"funder_award_id":"FA8650-09-2-3938","funder_id":"https://openalex.org/F4320338294","funder_display_name":"Air Force Research Laboratory"},{"id":"https://openalex.org/G8289759875","display_name":null,"funder_award_id":"FA9550","funder_id":"https://openalex.org/F4320338294","funder_display_name":"Air Force Research Laboratory"},{"id":"https://openalex.org/G8839824311","display_name":null,"funder_award_id":"FA9550-09-1-0153","funder_id":"https://openalex.org/F4320338279","funder_display_name":"Air Force Office of Scientific Research"}],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320338279","display_name":"Air Force Office of Scientific Research","ror":"https://ror.org/011e9bt93"},{"id":"https://openalex.org/F4320338294","display_name":"Air Force Research Laboratory","ror":"https://ror.org/02e2egq70"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2091259397.pdf","grobid_xml":"https://content.openalex.org/works/W2091259397.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1513621883","https://openalex.org/W1684305122","https://openalex.org/W1875112053","https://openalex.org/W1971937094","https://openalex.org/W2085277871","https://openalex.org/W2099946731","https://openalex.org/W2115138247","https://openalex.org/W2128653811","https://openalex.org/W2136280642","https://openalex.org/W2145268834","https://openalex.org/W2155480785","https://openalex.org/W2163485494","https://openalex.org/W2486096428","https://openalex.org/W2915108429","https://openalex.org/W4238452917"],"related_works":["https://openalex.org/W1510894296","https://openalex.org/W2134386692","https://openalex.org/W2082284720","https://openalex.org/W2084326697","https://openalex.org/W2194396582","https://openalex.org/W2027903142","https://openalex.org/W2116722627","https://openalex.org/W2354322608","https://openalex.org/W2379938888","https://openalex.org/W2804608325"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,172],"Structural":[2],"Classification":[3],"of":[4,12,23,168,186,208],"Proteins":[5],"(SCOP)":[6],"database":[7,207],"uses":[8],"a":[9,62,95,114,129,136],"large":[10,166],"number":[11,167],"hidden":[13],"Markov":[14],"models":[15],"(HMMs)":[16],"to":[17,38,56,65,91,118,182],"represent":[18],"families":[19,73],"and":[20,71,74,93,102,164],"superfamilies":[21,75],"composed":[22],"proteins":[24],"that":[25,76,110],"presumably":[26],"share":[27],"the":[28,34,53,58,67,72,87,98,103,111,119,144,152,159,165,184,189,192,206],"same":[29,120,193],"evolutionary":[30],"origin.":[31],"However,":[32],"how":[33],"HMMs":[35,70,101,112,190],"are":[36,100],"related":[37],"one":[39],"another":[40],"has":[41],"not":[42],"been":[43],"examined":[44],"before.":[45],"RESULTS:":[46],"In":[47],"this":[48,140],"work,":[49],"taking":[50],"into":[51],"account":[52],"processes":[54],"used":[55],"build":[57],"HMMs,":[59],"we":[60,80],"propose":[61],"working":[63,141],"hypothesis":[64],"examine":[66],"relationships":[68],"between":[69,188],"they":[77],"represent.":[78],"Specifically,":[79],"perform":[81],"an":[82],"all-against-all":[83],"HMM":[84,145],"comparison":[85],"using":[86],"HHsearch":[88],"program":[89],"(similar":[90],"BLAST)":[92],"construct":[94],"network":[96,131,146],"where":[97],"nodes":[99],"edges":[104],"connect":[105],"similar":[106],"HMMs.":[107,209],"We":[108],"hypothesize":[109],"in":[113,178,197],"connected":[115,169],"component":[116],"belong":[117],"family":[121],"or":[122],"superfamily":[123],"more":[124,200],"often":[125],"than":[126],"expected":[127],"under":[128],"random":[130],"connection":[132],"model.":[133],"Results":[134],"show":[135],"pattern":[137],"consistent":[138],"with":[139],"hypothesis.":[142],"Moreover,":[143],"possesses":[147],"features":[148],"distinctly":[149],"different":[150],"from":[151],"previously":[153],"documented":[154],"biological":[155],"networks,":[156],"exemplified":[157],"by":[158],"exceptionally":[160],"high":[161],"clustering":[162],"coefficient":[163],"components.":[170],"CONCLUSIONS:":[171],"current":[173],"finding":[174],"may":[175,196],"provide":[176],"guidance":[177],"devising":[179],"computational":[180],"methods":[181],"reduce":[183],"degree":[185],"overlaps":[187],"representing":[191],"superfamilies,":[194],"which":[195],"turn":[198],"enable":[199],"efficient":[201],"large-scale":[202],"sequence":[203],"searches":[204],"against":[205]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
