{"id":"https://openalex.org/W2134641814","doi":"https://doi.org/10.1186/1471-2105-12-183","title":"Normalization and centering of array-based heterologous genome hybridization based on divergent control probes","display_name":"Normalization and centering of array-based heterologous genome hybridization based on divergent control probes","publication_year":2011,"publication_date":"2011-05-21","ids":{"openalex":"https://openalex.org/W2134641814","doi":"https://doi.org/10.1186/1471-2105-12-183","mag":"2134641814","pmid":"https://pubmed.ncbi.nlm.nih.gov/21600029"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-183","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-183","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-183","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-183","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064908440","display_name":"Brian J. Darby","orcid":"https://orcid.org/0000-0002-9788-2593"},"institutions":[{"id":"https://openalex.org/I189590672","display_name":"Kansas State University","ror":"https://ror.org/05p1j8758","country_code":"US","type":"education","lineage":["https://openalex.org/I189590672"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Brian J Darby","raw_affiliation_strings":["Ecological Genomics Institute, Division of Biology, Kansas State University, Manhattan, KS 66506, USA","Ecological Genomics Institute, Division of Biology, Kansas State University, Manhattan, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ecological Genomics Institute, Division of Biology, Kansas State University, Manhattan, KS 66506, USA","institution_ids":["https://openalex.org/I189590672"]},{"raw_affiliation_string":"Ecological Genomics Institute, Division of Biology, Kansas State University, Manhattan, USA","institution_ids":["https://openalex.org/I189590672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103183161","display_name":"Kenneth L. Jones","orcid":"https://orcid.org/0000-0002-7735-7935"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]},{"id":"https://openalex.org/I189590672","display_name":"Kansas State University","ror":"https://ror.org/05p1j8758","country_code":"US","type":"education","lineage":["https://openalex.org/I189590672"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kenneth L Jones","raw_affiliation_strings":["Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, 80045, USA","Ecological Genomics Institute, Division of Biology, Kansas State University, Manhattan, KS, 66506, USA","Ecological Genomics Institute, Division of Biology, Kansas State University, Manhattan, USA","Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, 80045, USA","institution_ids":["https://openalex.org/I921990950"]},{"raw_affiliation_string":"Ecological Genomics Institute, Division of Biology, Kansas State University, Manhattan, KS, 66506, USA","institution_ids":["https://openalex.org/I189590672"]},{"raw_affiliation_string":"Ecological Genomics Institute, Division of Biology, Kansas State University, Manhattan, USA","institution_ids":["https://openalex.org/I189590672"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, USA","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003575856","display_name":"David A. Wheeler","orcid":"https://orcid.org/0000-0002-9056-6299"},"institutions":[{"id":"https://openalex.org/I189590672","display_name":"Kansas State University","ror":"https://ror.org/05p1j8758","country_code":"US","type":"education","lineage":["https://openalex.org/I189590672"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Wheeler","raw_affiliation_strings":["Ecological Genomics Institute, Division of Biology, Kansas State University, Manhattan, KS, 66506, USA","Ecological Genomics Institute, Division of Biology, Kansas State University, Manhattan, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ecological Genomics Institute, Division of Biology, Kansas State University, Manhattan, KS, 66506, USA","institution_ids":["https://openalex.org/I189590672"]},{"raw_affiliation_string":"Ecological Genomics Institute, Division of Biology, Kansas State University, Manhattan, USA","institution_ids":["https://openalex.org/I189590672"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003404451","display_name":"Michael A. Herman","orcid":"https://orcid.org/0000-0001-6796-1568"},"institutions":[{"id":"https://openalex.org/I189590672","display_name":"Kansas State University","ror":"https://ror.org/05p1j8758","country_code":"US","type":"education","lineage":["https://openalex.org/I189590672"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael A Herman","raw_affiliation_strings":["Ecological Genomics Institute, Division of Biology, Kansas State University, Manhattan, KS, 66506, USA","Ecological Genomics Institute, Division of Biology, Kansas State University, Manhattan, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ecological Genomics Institute, Division of Biology, Kansas State University, Manhattan, KS, 66506, USA","institution_ids":["https://openalex.org/I189590672"]},{"raw_affiliation_string":"Ecological Genomics Institute, Division of Biology, Kansas State University, Manhattan, USA","institution_ids":["https://openalex.org/I189590672"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5064908440"],"corresponding_institution_ids":["https://openalex.org/I189590672"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.14198016,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"12","issue":"1","first_page":"183","last_page":"183"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.21119999885559082,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.21119999885559082,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.20010000467300415,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.15690000355243683,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.7306246757507324},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6318767070770264},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5529343485832214},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4734202027320862},{"id":"https://openalex.org/keywords/heterologous","display_name":"Heterologous","score":0.45085400342941284},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4330942928791046},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.220350980758667}],"concepts":[{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.7306246757507324},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6318767070770264},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5529343485832214},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4734202027320862},{"id":"https://openalex.org/C2780115692","wikidata":"https://www.wikidata.org/wiki/Q5747302","display_name":"Heterologous","level":3,"score":0.45085400342941284},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4330942928791046},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.220350980758667},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002107","descriptor_name":"Caenorhabditis","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D002107","descriptor_name":"Caenorhabditis","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D002107","descriptor_name":"Caenorhabditis","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D002107","descriptor_name":"Caenorhabditis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002107","descriptor_name":"Caenorhabditis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002107","descriptor_name":"Caenorhabditis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009693","descriptor_name":"Nucleic Acid Hybridization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009693","descriptor_name":"Nucleic Acid Hybridization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009693","descriptor_name":"Nucleic Acid Hybridization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-12-183","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-183","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-183","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21600029","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21600029","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:digitalcommons.unl.edu:bioscifacpub-1680","is_oa":false,"landing_page_url":"https://digitalcommons.unl.edu/bioscifacpub/681","pdf_url":null,"source":{"id":"https://openalex.org/S4306513441","display_name":"Insecta mundi","issn_l":"0749-6737","issn":["0749-6737","1942-1354","1942-1362"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310316217","host_organization_name":"Center for Systematic Entomology","host_organization_lineage":["https://openalex.org/P4310316217"],"host_organization_lineage_names":["Center for Systematic Entomology"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications in the Biological Sciences","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:322a7bc7f3e84bb9a475612236eee08a","is_oa":true,"landing_page_url":"https://doaj.org/article/322a7bc7f3e84bb9a475612236eee08a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 183 (2011)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3125262","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3125262","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-183","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-183","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-183","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3291396225","display_name":"En-Gen: Ecological Genomics of Soil Nematode Community Responses: Model and Non-Model Approaches","funder_award_id":"0723862","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2134641814.pdf","grobid_xml":"https://content.openalex.org/works/W2134641814.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1491263250","https://openalex.org/W1503524769","https://openalex.org/W2017535462","https://openalex.org/W2024737268","https://openalex.org/W2033934032","https://openalex.org/W2055117508","https://openalex.org/W2081309365","https://openalex.org/W2083171334","https://openalex.org/W2089020240","https://openalex.org/W2090415636","https://openalex.org/W2097194713","https://openalex.org/W2100932027","https://openalex.org/W2107490733","https://openalex.org/W2109972881","https://openalex.org/W2119539687","https://openalex.org/W2120865735","https://openalex.org/W2124389094","https://openalex.org/W2126087085","https://openalex.org/W2130021473","https://openalex.org/W2134066223","https://openalex.org/W2135995702","https://openalex.org/W2138397256","https://openalex.org/W2138610208","https://openalex.org/W2151566419","https://openalex.org/W2152430289","https://openalex.org/W2156898053","https://openalex.org/W2162266792","https://openalex.org/W2165641912","https://openalex.org/W4255852734"],"related_works":["https://openalex.org/W1992910799","https://openalex.org/W2589516793","https://openalex.org/W2029961897","https://openalex.org/W2411899306","https://openalex.org/W2220795605","https://openalex.org/W3141373385","https://openalex.org/W1986607702","https://openalex.org/W2141539342","https://openalex.org/W2012867442","https://openalex.org/W2002869663"],"abstract_inverted_index":{"BACKGROUND:":[0],"Hybridization":[1],"of":[2,33,69,75,108,112,155,192,226,250],"heterologous":[3,62,86],"(non-specific)":[4],"nucleic":[5,227],"acids":[6,228],"onto":[7],"arrays":[8],"designed":[9],"for":[10,20,55,81,96,105,120,207],"model-organisms":[11],"has":[12],"been":[13],"proposed":[14],"as":[15,40,134,136],"a":[16,79,109,201,221],"viable":[17],"genomic":[18],"resource":[19],"estimating":[21],"sequence":[22,141,185,244],"variation":[23],"and":[24,57,77,101,130,144,167,218],"gene":[25],"expression":[26],"in":[27,189,220],"non-model":[28,210],"organisms.":[29],"However,":[30],"conventional":[31],"methods":[32],"normalization":[34,138,150],"that":[35,64,176,223],"assume":[36],"equivalent":[37],"distributions":[38],"(such":[39],"quantile":[41,149],"normalization)":[42],"are":[43,92],"inappropriate":[44],"when":[45],"applied":[46],"to":[47,83,116,127,132,187,203,246],"non-specific":[48],"(heterologous)":[49],"hybridization.":[50],"We":[51],"propose":[52],"an":[53],"algorithm":[54],"normalizing":[56],"centering":[58],"intensity":[59,179,237],"data":[60,213],"from":[61],"hybridization":[63,87,225,236],"makes":[65],"no":[66],"prior":[67],"assumptions":[68],"distribution,":[70],"reduces":[71],"the":[72,106,153,171,253],"false":[73,156],"appearance":[74],"homology,":[76],"provides":[78],"way":[80,202,222],"researchers":[82],"confirm":[84],"whether":[85],"is":[88],"suitable.":[89],"RESULTS:":[90],"Data":[91],"normalized":[93,217],"by":[94,103],"adjusting":[95,104],"Gibbs":[97],"free":[98],"energy":[99],"binding,":[100],"centered":[102,219],"median":[107],"common":[110],"set":[111],"control":[113],"probes":[114],"assumed":[115],"be":[117,133,200,215,240],"equivalently":[118],"dissimilar":[119],"all":[121],"species.":[122],"This":[123],"procedure":[124],"was":[125,180],"compared":[126],"existing":[128],"approaches":[129],"found":[131,175],"successful":[135,147],"Loess":[137],"at":[139,151,252],"detecting":[140],"variations":[142],"(deletions)":[143],"even":[145],"more":[146],"than":[148],"reducing":[152],"accumulation":[154],"positive":[157],"probe":[158,177,194,254],"matches":[159],"between":[160],"two":[161],"related":[162,209],"nematode":[163],"species,":[164],"Caenorhabditis":[165],"elegans":[166],"C.":[168],"briggsae.":[169],"Despite":[170],"improvements,":[172],"we":[173],"still":[174],"fluorescence":[178],"too":[181],"poorly":[182],"correlated":[183,242],"with":[184,229,243],"similarity":[186,245],"result":[188],"reliable":[190,248],"detection":[191],"matching":[193],"sequence.":[195,231],"CONCLUSIONS:":[196],"Cross-species":[197],"hybridizations":[198],"can":[199],"adapt":[204],"genome-enabled":[205],"tools":[206],"closely":[208],"organisms,":[211],"but":[212],"must":[214],"appropriately":[216],"accommodates":[224],"diverged":[230],"For":[232],"short,":[233],"25-mer":[234],"probes,":[235],"alone":[238],"may":[239],"insufficiently":[241],"allow":[247],"inference":[249],"homology":[251],"level.":[255]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
