{"id":"https://openalex.org/W2086104943","doi":"https://doi.org/10.1186/1471-2105-12-175","title":"Toward an interactive article: integrating journals and biological databases","display_name":"Toward an interactive article: integrating journals and biological databases","publication_year":2011,"publication_date":"2011-05-19","ids":{"openalex":"https://openalex.org/W2086104943","doi":"https://doi.org/10.1186/1471-2105-12-175","mag":"2086104943","pmid":"https://pubmed.ncbi.nlm.nih.gov/21595960"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-175","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-175","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-175","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-175","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028444948","display_name":"Arun Rangarajan","orcid":null},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Arun Rangarajan","raw_affiliation_strings":["Division of Biology, California Institute of Technology, Pasadena, CA 91125, USA","Division of Biology California Institute of Technology, Pasadena, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biology, California Institute of Technology, Pasadena, CA 91125, USA","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Division of Biology California Institute of Technology, Pasadena, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043320353","display_name":"Tim Schedl","orcid":"https://orcid.org/0000-0003-2148-2996"},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tim Schedl","raw_affiliation_strings":["Department of Genetics, Washington University School of Medicine, Saint Louis, MO, 63110, USA","Department of Genetics, Washington University, School of Medicine, Saint Louis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Washington University School of Medicine, Saint Louis, MO, 63110, USA","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"Department of Genetics, Washington University, School of Medicine, Saint Louis, USA","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034022440","display_name":"Karen Yook","orcid":"https://orcid.org/0000-0002-4457-6787"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Karen Yook","raw_affiliation_strings":["Division of Biology, California Institute of Technology, Pasadena, CA, 91125, USA","Division of Biology California Institute of Technology, Pasadena, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biology, California Institute of Technology, Pasadena, CA, 91125, USA","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Division of Biology California Institute of Technology, Pasadena, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111902938","display_name":"Juancarlos Chan","orcid":"https://orcid.org/0000-0002-7259-8107"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Juancarlos Chan","raw_affiliation_strings":["Division of Biology, California Institute of Technology, Pasadena, CA, 91125, USA","Division of Biology California Institute of Technology, Pasadena, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biology, California Institute of Technology, Pasadena, CA, 91125, USA","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Division of Biology California Institute of Technology, Pasadena, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073700395","display_name":"Stephen Haenel","orcid":null},"institutions":[{"id":"https://openalex.org/I2802713531","display_name":"Pilgrim Psychiatric Center","ror":"https://ror.org/047s4cx41","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2802713531"]},{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen Haenel","raw_affiliation_strings":["Dartmouth Journal Services, Pilgrim Five, Suite 5, 5 Pilgrim Park Road, Waterbury, VT, 05676, USA","Dartmouth Journal Services, Waterbury, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dartmouth Journal Services, Pilgrim Five, Suite 5, 5 Pilgrim Park Road, Waterbury, VT, 05676, USA","institution_ids":["https://openalex.org/I2802713531"]},{"raw_affiliation_string":"Dartmouth Journal Services, Waterbury, USA","institution_ids":["https://openalex.org/I107672454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052243027","display_name":"Lolly Otis","orcid":null},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]},{"id":"https://openalex.org/I2802713531","display_name":"Pilgrim Psychiatric Center","ror":"https://ror.org/047s4cx41","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2802713531"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lolly Otis","raw_affiliation_strings":["Dartmouth Journal Services, Pilgrim Five, Suite 5, 5 Pilgrim Park Road, Waterbury, VT, 05676, USA","Dartmouth Journal Services, Waterbury, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dartmouth Journal Services, Pilgrim Five, Suite 5, 5 Pilgrim Park Road, Waterbury, VT, 05676, USA","institution_ids":["https://openalex.org/I2802713531"]},{"raw_affiliation_string":"Dartmouth Journal Services, Waterbury, USA","institution_ids":["https://openalex.org/I107672454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078489746","display_name":"Sharon Faelten","orcid":null},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]},{"id":"https://openalex.org/I2802713531","display_name":"Pilgrim Psychiatric Center","ror":"https://ror.org/047s4cx41","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2802713531"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sharon Faelten","raw_affiliation_strings":["Dartmouth Journal Services, Pilgrim Five, Suite 5, 5 Pilgrim Park Road, Waterbury, VT, 05676, USA","Dartmouth Journal Services, Waterbury, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dartmouth Journal Services, Pilgrim Five, Suite 5, 5 Pilgrim Park Road, Waterbury, VT, 05676, USA","institution_ids":["https://openalex.org/I2802713531"]},{"raw_affiliation_string":"Dartmouth Journal Services, Waterbury, USA","institution_ids":["https://openalex.org/I107672454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045401848","display_name":"Tracey DePellegrin-Connelly","orcid":null},"institutions":[{"id":"https://openalex.org/I2801578167","display_name":"Genetics Society of America","ror":"https://ror.org/05xvyz406","country_code":"US","type":"other","lineage":["https://openalex.org/I2801578167"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tracey DePellegrin-Connelly","raw_affiliation_strings":["Genetics Society of America, 9650 Rockville Pike, Bethesda, MD, 20814-3998, USA","Genetics Society of America, Bethesda, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genetics Society of America, 9650 Rockville Pike, Bethesda, MD, 20814-3998, USA","institution_ids":["https://openalex.org/I2801578167"]},{"raw_affiliation_string":"Genetics Society of America, Bethesda, USA","institution_ids":["https://openalex.org/I2801578167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060128463","display_name":"Ruth Isaacson","orcid":"https://orcid.org/0000-0002-4321-6608"},"institutions":[{"id":"https://openalex.org/I2801578167","display_name":"Genetics Society of America","ror":"https://ror.org/05xvyz406","country_code":"US","type":"other","lineage":["https://openalex.org/I2801578167"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruth Isaacson","raw_affiliation_strings":["Genetics Society of America, 9650 Rockville Pike, Bethesda, MD, 20814-3998, USA","Genetics Society of America, Bethesda, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genetics Society of America, 9650 Rockville Pike, Bethesda, MD, 20814-3998, USA","institution_ids":["https://openalex.org/I2801578167"]},{"raw_affiliation_string":"Genetics Society of America, Bethesda, USA","institution_ids":["https://openalex.org/I2801578167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076684723","display_name":"Marek S. Skrzypek","orcid":"https://orcid.org/0000-0001-6749-615X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marek S Skrzypek","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine, Stanford, CA, 94305, USA","Dept. of Genetics, Stanford University, School of Medicine, Stanford, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine, Stanford, CA, 94305, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Dept. of Genetics, Stanford University, School of Medicine, Stanford, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005252212","display_name":"Steven J Marygold","orcid":"https://orcid.org/0000-0003-2759-266X"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Steven J Marygold","raw_affiliation_strings":["Department of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK","Department of Genetics University of Cambridge, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Department of Genetics University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029885649","display_name":"Ray Stefancsik","orcid":"https://orcid.org/0000-0001-8314-2140"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Raymund Stefancsik","raw_affiliation_strings":["Department of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK","Department of Genetics University of Cambridge, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Department of Genetics University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058567429","display_name":"J. Michael Cherry","orcid":"https://orcid.org/0000-0001-9163-5180"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J Michael Cherry","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine, Stanford, CA, 94305, USA","Dept. of Genetics, Stanford University, School of Medicine, Stanford, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine, Stanford, CA, 94305, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Dept. of Genetics, Stanford University, School of Medicine, Stanford, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033624132","display_name":"Paul W. Sternberg","orcid":"https://orcid.org/0000-0002-7699-0173"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul W Sternberg","raw_affiliation_strings":["Division of Biology, California Institute of Technology, Pasadena, CA, 91125, USA","Howard Hughes Medical Institute, 4000 Jones Bridge Road, Chevy Chase, MD, 20815, USA","Howard Hughes Medical Institute, Chevy Chase, USA","Division of Biology, California Institute of Technology, Pasadena, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biology, California Institute of Technology, Pasadena, CA, 91125, USA","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Howard Hughes Medical Institute, 4000 Jones Bridge Road, Chevy Chase, MD, 20815, USA","institution_ids":["https://openalex.org/I1344073410"]},{"raw_affiliation_string":"Howard Hughes Medical Institute, Chevy Chase, USA","institution_ids":["https://openalex.org/I1344073410"]},{"raw_affiliation_string":"Division of Biology, California Institute of Technology, Pasadena, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063280401","display_name":"Hans\u2010Michael M\u00fcller","orcid":"https://orcid.org/0000-0002-2384-7285"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hans-Michael M\u00fcller","raw_affiliation_strings":["Division of Biology, California Institute of Technology, Pasadena, CA, 91125, USA","Division of Biology California Institute of Technology, Pasadena, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biology, California Institute of Technology, Pasadena, CA, 91125, USA","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Division of Biology California Institute of Technology, Pasadena, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5028444948"],"corresponding_institution_ids":["https://openalex.org/I122411786"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7981,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.71573058,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"12","issue":"1","first_page":"175","last_page":"175"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9453999996185303,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9453999996185303,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.014999999664723873,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.006300000008195639,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7474413514137268},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6283895969390869},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.5589755177497864},{"id":"https://openalex.org/keywords/software-portability","display_name":"Software portability","score":0.5501096248626709},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.49906349182128906},{"id":"https://openalex.org/keywords/pace","display_name":"Pace","score":0.4681045711040497},{"id":"https://openalex.org/keywords/bridging","display_name":"Bridging (networking)","score":0.46108242869377136},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.42428058385849},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.421853244304657},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4172631502151489},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4007209539413452},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.2063927948474884}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7474413514137268},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6283895969390869},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.5589755177497864},{"id":"https://openalex.org/C63000827","wikidata":"https://www.wikidata.org/wiki/Q3080428","display_name":"Software portability","level":2,"score":0.5501096248626709},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.49906349182128906},{"id":"https://openalex.org/C2777526511","wikidata":"https://www.wikidata.org/wiki/Q691543","display_name":"Pace","level":2,"score":0.4681045711040497},{"id":"https://openalex.org/C174348530","wikidata":"https://www.wikidata.org/wiki/Q188635","display_name":"Bridging (networking)","level":2,"score":0.46108242869377136},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.42428058385849},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.421853244304657},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4172631502151489},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4007209539413452},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.2063927948474884},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-12-175","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-175","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-175","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21595960","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21595960","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:digitalcommons.wustl.edu:open_access_pubs-1366","is_oa":true,"landing_page_url":"https://digitalcommons.wustl.edu/open_access_pubs/359","pdf_url":"https://digitalcommons.wustl.edu/cgi/viewcontent.cgi?article=1366&context=open_access_pubs","source":{"id":"https://openalex.org/S4306400764","display_name":"Digital Commons@Becker (Washington University School of Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I204465549","host_organization_name":"Washington University in St. Louis","host_organization_lineage":["https://openalex.org/I204465549"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Open Access Publications","raw_type":"text"},{"id":"pmh:oai:authors.library.caltech.edu:24540","is_oa":true,"landing_page_url":"https://resolver.caltech.edu/CaltechAUTHORS:20110726-095513577","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:5d878681813e4f058fcd01e603ec4764","is_oa":true,"landing_page_url":"https://doaj.org/article/5d878681813e4f058fcd01e603ec4764","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 175 (2011)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3213741","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3213741","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/238517","is_oa":true,"landing_page_url":"http://www.dspace.cam.ac.uk/handle/1810/238517","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-175","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-175","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-175","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G4463229245","display_name":null,"funder_award_id":"HG002223","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G5004258832","display_name":null,"funder_award_id":"HG001315","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G852904867","display_name":null,"funder_award_id":"GM63310","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"},{"id":"https://openalex.org/F4320310400","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2086104943.pdf","grobid_xml":"https://content.openalex.org/works/W2086104943.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1604959358","https://openalex.org/W1987522618","https://openalex.org/W1998712940","https://openalex.org/W2032445314","https://openalex.org/W2053673723","https://openalex.org/W2061111406","https://openalex.org/W2096285464","https://openalex.org/W2097056536","https://openalex.org/W2100008677","https://openalex.org/W2100627415","https://openalex.org/W2103108559","https://openalex.org/W2113439138","https://openalex.org/W2124617249","https://openalex.org/W2157641143","https://openalex.org/W2157870551","https://openalex.org/W2530257681"],"related_works":["https://openalex.org/W107105315","https://openalex.org/W1584537303","https://openalex.org/W1872724644","https://openalex.org/W2750549761","https://openalex.org/W4388155270","https://openalex.org/W28826848","https://openalex.org/W2122272819","https://openalex.org/W4367156293","https://openalex.org/W2130894091","https://openalex.org/W2994151208"],"abstract_inverted_index":{"BACKGROUND:":[0],"Journal":[1],"articles":[2,149,297,313],"and":[3,15,39,51,67,113,117,120,150,190,195,199,276,278,337,345],"databases":[4,40,304],"are":[5,92,197,235,255,315],"two":[6],"major":[7],"modes":[8],"of":[9,22,29,57,115,122,183,323],"communication":[10],"in":[11,54,177,282,299,311,339],"the":[12,27,35,44,47,55,107,111,118,151,166,227,243],"biological":[13],"sciences,":[14],"thus":[16],"integrating":[17],"these":[18,100],"critical":[19],"resources":[20],"is":[21,125,222],"urgent":[23],"importance":[24],"to":[25,71,88,129,224,238,252,268,289,301,341],"increase":[26],"pace":[28],"discovery.":[30],"Projects":[31],"focused":[32],"on":[33,43],"bridging":[34],"gap":[36],"between":[37,110],"journals":[38],"have":[41,52,138],"been":[42,266,280],"rise":[45],"over":[46,180],"last":[48],"five":[49],"years":[50],"resulted":[53],"development":[56],"automated":[58,76],"tools":[59,77,336],"that":[60,81,91,145,221,247,314],"can":[61],"recognize":[62],"entities":[63,70,90,164,194,230,246],"within":[64],"a":[65,72,126,133,140,160,169,202,206,218,285,324],"document":[66],"link":[68,254],"those":[69],"relevant":[73],"database.":[74,244],"Unfortunately,":[75],"cannot":[78],"resolve":[79,251],"ambiguities":[80,101,196],"arise":[82],"from":[83,95,165,179,215,333],"one":[84,96,253],"term":[85],"being":[86],"used":[87],"signify":[89],"quite":[93],"distinct":[94],"another.":[97],"Instead,":[98],"resolving":[99],"requires":[102],"some":[103],"manual":[104,123,207,325],"oversight.":[105],"Finding":[106],"right":[108],"balance":[109],"speed":[112],"portability":[114],"automation":[116],"accuracy":[119],"flexibility":[121],"effort":[124],"crucial":[127],"goal":[128],"making":[130],"text":[131],"markup":[132,174],"successful":[134],"venture.":[135],"RESULTS:":[136],"We":[137],"established":[139],"journal":[141,148],"article":[142],"mark-up":[143],"pipeline":[144,158,175,234,264,295,309,331],"links":[146,178,288],"GENETICS":[147,300],"model":[152,302],"organism":[153,303],"database":[154,167,203],"(MOD)":[155],"WormBase.":[156,307],"This":[157,263],"uses":[159],"lexicon":[161],"built":[162],"with":[163,213,287,318],"as":[168,306],"first":[170],"step.":[171],"The":[172,321],"entity":[173],"results":[176,310,338],"nine":[181],"classes":[182],"objects":[184],"including":[185],"genes,":[186],"proteins,":[187],"alleles,":[188],"phenotypes":[189],"anatomical":[191],"terms.":[192],"New":[193,229],"discovered":[198,231],"resolved":[200,256],"by":[201,226,257],"curator":[204,241],"through":[205,232],"quality":[208,326],"control":[209,327],"(QC)":[210],"step,":[211],"along":[212],"help":[214],"authors":[216],"via":[217],"web":[219],"form":[220],"provided":[223],"them":[225],"journal.":[228],"this":[233,330],"immediately":[236],"sent":[237],"an":[239,260],"appropriate":[240],"at":[242],"Ambiguous":[245],"do":[248],"not":[249],"automatically":[250],"hand":[258],"ensuring":[259],"accurate":[261],"link.":[262],"has":[265,279],"extended":[267],"other":[269,334],"databases,":[270],"namely":[271],"Saccharomyces":[272],"Genome":[273],"Database":[274],"(SGD)":[275],"FlyBase,":[277],"implemented":[281],"marking":[283],"up":[284],"paper":[286],"multiple":[290],"databases.":[291,346],"CONCLUSIONS:":[292],"Our":[293,308],"semi-automated":[294],"hyperlinks":[296],"published":[298],"such":[305],"interactive":[312],"data":[316],"rich":[317],"high":[319],"accuracy.":[320],"use":[322],"step":[328],"sets":[329],"apart":[332],"hyperlinking":[335],"benefits":[340],"authors,":[342],"journals,":[343],"readers":[344]},"counts_by_year":[{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":4}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
