{"id":"https://openalex.org/W2101601013","doi":"https://doi.org/10.1186/1471-2105-12-163","title":"Efficient alignment of pyrosequencing reads for re-sequencing applications","display_name":"Efficient alignment of pyrosequencing reads for re-sequencing applications","publication_year":2011,"publication_date":"2011-05-16","ids":{"openalex":"https://openalex.org/W2101601013","doi":"https://doi.org/10.1186/1471-2105-12-163","mag":"2101601013","pmid":"https://pubmed.ncbi.nlm.nih.gov/21672185"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-163","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-163","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-163","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-163","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058255492","display_name":"Francisco Fernandes","orcid":"https://orcid.org/0000-0003-2546-2669"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I203847022","display_name":"Instituto Polit\u00e9cnico de Lisboa","ror":"https://ror.org/04ea70f07","country_code":"PT","type":"education","lineage":["https://openalex.org/I203847022"]},{"id":"https://openalex.org/I4387152517","display_name":"Instituto Superior T\u00e9cnico","ror":"https://ror.org/03db2by73","country_code":null,"type":"education","lineage":["https://openalex.org/I141596103","https://openalex.org/I4387152517"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Francisco Fernandes","raw_affiliation_strings":["Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento, R. Alves Redol 9, 1000-029 Lisboa, Portugal","Instituto Superior T\u00e9cnico-Universidade T\u00e9cnica de Lisboa (IST/UTL), Lisboa, Portugal","Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento, R. Alves Redol 9, 1000-029 Lisboa, Portugal","institution_ids":[]},{"raw_affiliation_string":"Instituto Superior T\u00e9cnico-Universidade T\u00e9cnica de Lisboa (IST/UTL), Lisboa, Portugal","institution_ids":["https://openalex.org/I203847022","https://openalex.org/I4387152517"]},{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), Lisboa, Portugal","institution_ids":["https://openalex.org/I121345201"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111884857","display_name":"Paulo GS da Fonseca","orcid":null},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Paulo GS da Fonseca","raw_affiliation_strings":["Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), R. Alves Redol 9, 1000-029, Lisboa, Portugal","Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), R. Alves Redol 9, 1000-029, Lisboa, Portugal","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), Lisboa, Portugal","institution_ids":["https://openalex.org/I121345201"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027395190","display_name":"Lu\u00eds M. S.\u200bRusso","orcid":"https://orcid.org/0000-0002-1966-1808"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I4387152517","display_name":"Instituto Superior T\u00e9cnico","ror":"https://ror.org/03db2by73","country_code":null,"type":"education","lineage":["https://openalex.org/I141596103","https://openalex.org/I4387152517"]},{"id":"https://openalex.org/I203847022","display_name":"Instituto Polit\u00e9cnico de Lisboa","ror":"https://ror.org/04ea70f07","country_code":"PT","type":"education","lineage":["https://openalex.org/I203847022"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Luis MS Russo","raw_affiliation_strings":["Instituto Superior T\u00e9cnico-Universidade T\u00e9cnica de Lisboa (IST/UTL), Av. Rovisco Pais, 1049-001, Lisboa, Portugal","Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), R. Alves Redol 9, 1000-029, Lisboa, Portugal","Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), Lisboa, Portugal","Instituto Superior T\u00e9cnico-Universidade T\u00e9cnica de Lisboa (IST/UTL), Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"Instituto Superior T\u00e9cnico-Universidade T\u00e9cnica de Lisboa (IST/UTL), Av. Rovisco Pais, 1049-001, Lisboa, Portugal","institution_ids":["https://openalex.org/I4387152517"]},{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), R. Alves Redol 9, 1000-029, Lisboa, Portugal","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), Lisboa, Portugal","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"Instituto Superior T\u00e9cnico-Universidade T\u00e9cnica de Lisboa (IST/UTL), Lisboa, Portugal","institution_ids":["https://openalex.org/I203847022","https://openalex.org/I4387152517"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001327675","display_name":"Arlindo L. Oliveira","orcid":"https://orcid.org/0000-0001-8638-5594"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I4387152517","display_name":"Instituto Superior T\u00e9cnico","ror":"https://ror.org/03db2by73","country_code":null,"type":"education","lineage":["https://openalex.org/I141596103","https://openalex.org/I4387152517"]},{"id":"https://openalex.org/I203847022","display_name":"Instituto Polit\u00e9cnico de Lisboa","ror":"https://ror.org/04ea70f07","country_code":"PT","type":"education","lineage":["https://openalex.org/I203847022"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Arlindo L Oliveira","raw_affiliation_strings":["Instituto Superior T\u00e9cnico-Universidade T\u00e9cnica de Lisboa (IST/UTL), Av. Rovisco Pais, 1049-001, Lisboa, Portugal","Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), R. Alves Redol 9, 1000-029, Lisboa, Portugal","Instituto Superior T\u00e9cnico-Universidade T\u00e9cnica de Lisboa (IST/UTL), Lisboa, Portugal","Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"Instituto Superior T\u00e9cnico-Universidade T\u00e9cnica de Lisboa (IST/UTL), Av. Rovisco Pais, 1049-001, Lisboa, Portugal","institution_ids":["https://openalex.org/I4387152517"]},{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), R. Alves Redol 9, 1000-029, Lisboa, Portugal","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"Instituto Superior T\u00e9cnico-Universidade T\u00e9cnica de Lisboa (IST/UTL), Lisboa, Portugal","institution_ids":["https://openalex.org/I203847022","https://openalex.org/I4387152517"]},{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), Lisboa, Portugal","institution_ids":["https://openalex.org/I121345201"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083766796","display_name":"Ana T. Freitas","orcid":"https://orcid.org/0000-0002-2997-5990"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I4387152517","display_name":"Instituto Superior T\u00e9cnico","ror":"https://ror.org/03db2by73","country_code":null,"type":"education","lineage":["https://openalex.org/I141596103","https://openalex.org/I4387152517"]},{"id":"https://openalex.org/I203847022","display_name":"Instituto Polit\u00e9cnico de Lisboa","ror":"https://ror.org/04ea70f07","country_code":"PT","type":"education","lineage":["https://openalex.org/I203847022"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Ana T Freitas","raw_affiliation_strings":["Instituto Superior T\u00e9cnico-Universidade T\u00e9cnica de Lisboa (IST/UTL), Av. Rovisco Pais, 1049-001, Lisboa, Portugal","Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), R. Alves Redol 9, 1000-029, Lisboa, Portugal","Instituto Superior T\u00e9cnico-Universidade T\u00e9cnica de Lisboa (IST/UTL), Lisboa, Portugal","Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"Instituto Superior T\u00e9cnico-Universidade T\u00e9cnica de Lisboa (IST/UTL), Av. Rovisco Pais, 1049-001, Lisboa, Portugal","institution_ids":["https://openalex.org/I4387152517"]},{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), R. Alves Redol 9, 1000-029, Lisboa, Portugal","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"Instituto Superior T\u00e9cnico-Universidade T\u00e9cnica de Lisboa (IST/UTL), Lisboa, Portugal","institution_ids":["https://openalex.org/I203847022","https://openalex.org/I4387152517"]},{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), Lisboa, Portugal","institution_ids":["https://openalex.org/I121345201"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5058255492"],"corresponding_institution_ids":["https://openalex.org/I121345201","https://openalex.org/I203847022","https://openalex.org/I4387152517"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7982,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.71678912,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"12","issue":"1","first_page":"163","last_page":"163"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.9799000024795532,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pyrosequencing","display_name":"Pyrosequencing","score":0.7723786234855652},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.695757269859314},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6386083960533142},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.558111310005188},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.53227698802948},{"id":"https://openalex.org/keywords/massive-parallel-sequencing","display_name":"Massive parallel sequencing","score":0.504353404045105},{"id":"https://openalex.org/keywords/hybrid-genome-assembly","display_name":"Hybrid genome assembly","score":0.47678685188293457},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.45535707473754883},{"id":"https://openalex.org/keywords/turnaround-time","display_name":"Turnaround time","score":0.4501672387123108},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4433676600456238},{"id":"https://openalex.org/keywords/massively-parallel","display_name":"Massively parallel","score":0.4275825023651123},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.3865205645561218},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32478269934654236},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.26186132431030273},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24904808402061462},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.22530722618103027},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.12344318628311157},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11686387658119202},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1100492775440216},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.0973334014415741}],"concepts":[{"id":"https://openalex.org/C125009961","wikidata":"https://www.wikidata.org/wiki/Q2342248","display_name":"Pyrosequencing","level":3,"score":0.7723786234855652},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.695757269859314},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6386083960533142},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.558111310005188},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.53227698802948},{"id":"https://openalex.org/C192800701","wikidata":"https://www.wikidata.org/wiki/Q6784807","display_name":"Massive parallel sequencing","level":4,"score":0.504353404045105},{"id":"https://openalex.org/C113425843","wikidata":"https://www.wikidata.org/wiki/Q5953213","display_name":"Hybrid genome assembly","level":5,"score":0.47678685188293457},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.45535707473754883},{"id":"https://openalex.org/C176553487","wikidata":"https://www.wikidata.org/wiki/Q7855819","display_name":"Turnaround time","level":2,"score":0.4501672387123108},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4433676600456238},{"id":"https://openalex.org/C190475519","wikidata":"https://www.wikidata.org/wiki/Q544384","display_name":"Massively parallel","level":2,"score":0.4275825023651123},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.3865205645561218},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32478269934654236},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.26186132431030273},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24904808402061462},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.22530722618103027},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.12344318628311157},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11686387658119202},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1100492775440216},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0973334014415741},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-12-163","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-163","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-163","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21672185","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21672185","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:bb95a9b542284b5aa6f14c01906b8972","is_oa":true,"landing_page_url":"https://doaj.org/article/bb95a9b542284b5aa6f14c01906b8972","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 163 (2011)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3118166","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3118166","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-163","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-163","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-163","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5600000023841858}],"awards":[{"id":"https://openalex.org/G1299994043","display_name":null,"funder_award_id":"PIDDAC","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G3284537356","display_name":null,"funder_award_id":"SFRH/B","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5818630289","display_name":null,"funder_award_id":"SFRH/BD/","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6299983296","display_name":null,"funder_award_id":"PTDC/","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G724804869","display_name":null,"funder_award_id":"SFRH/","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2101601013.pdf","grobid_xml":"https://content.openalex.org/works/W2101601013.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W73181998","https://openalex.org/W938539187","https://openalex.org/W1548111976","https://openalex.org/W1990061958","https://openalex.org/W1990937720","https://openalex.org/W2005129098","https://openalex.org/W2013258751","https://openalex.org/W2035327151","https://openalex.org/W2088386938","https://openalex.org/W2097341408","https://openalex.org/W2103441770","https://openalex.org/W2107082304","https://openalex.org/W2119129391","https://openalex.org/W2124985265","https://openalex.org/W2128114769","https://openalex.org/W2128524432","https://openalex.org/W2130077037","https://openalex.org/W2138270253","https://openalex.org/W2142619120","https://openalex.org/W2151017710","https://openalex.org/W2160969485","https://openalex.org/W2161488606","https://openalex.org/W2164631357","https://openalex.org/W4247053599"],"related_works":["https://openalex.org/W1701825857","https://openalex.org/W2913125384","https://openalex.org/W2525551986","https://openalex.org/W2017435247","https://openalex.org/W2130077037","https://openalex.org/W2156542815","https://openalex.org/W82223681","https://openalex.org/W2934828429","https://openalex.org/W1820394219","https://openalex.org/W1966822396"],"abstract_inverted_index":{"The":[0],"proposed":[1],"methodology":[2],"was":[3],"implemented":[4],"in":[5],"a":[6],"software":[7],"tool":[8],"called":[9],"TAPyR--Tool":[10],"for":[11],"the":[12],"Alignment":[13],"of":[14],"Pyrosequencing":[15],"Reads--which":[16],"is":[17],"publicly":[18],"available":[19],"from":[20],"http://www.tapyr.net.":[21]},"counts_by_year":[{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
