{"id":"https://openalex.org/W2031553026","doi":"https://doi.org/10.1186/1471-2105-12-151","title":"PoPMuSiC 2.1: a web server for the estimation of protein stability changes upon mutation and sequence optimality","display_name":"PoPMuSiC 2.1: a web server for the estimation of protein stability changes upon mutation and sequence optimality","publication_year":2011,"publication_date":"2011-05-13","ids":{"openalex":"https://openalex.org/W2031553026","doi":"https://doi.org/10.1186/1471-2105-12-151","mag":"2031553026","pmid":"https://pubmed.ncbi.nlm.nih.gov/21569468"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-151","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-151","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-12-151.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-12-151.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091466337","display_name":"Yves Dehouck","orcid":"https://orcid.org/0000-0002-7401-104X"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Yves Dehouck","raw_affiliation_strings":["Bioinformatique g\u00e9nomique et structurale, Universit\u00e9 Libre de Bruxelles, Av, Fr, Roosevelt 50, CP165/61, 1050 Brussels, Belgium. ydehouck@ulb.ac.be","Bioinformatique g\u00e9nomique et structurale, Universit\u00e9 Libre de Bruxelles, Av, Fr, Roosevelt 50, CP165/61, 1050 Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatique g\u00e9nomique et structurale, Universit\u00e9 Libre de Bruxelles, Av, Fr, Roosevelt 50, CP165/61, 1050 Brussels, Belgium. ydehouck@ulb.ac.be","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Bioinformatique g\u00e9nomique et structurale, Universit\u00e9 Libre de Bruxelles, Av, Fr, Roosevelt 50, CP165/61, 1050 Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037585501","display_name":"Jean Marc Kwasigroch","orcid":null},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Jean Marc Kwasigroch","raw_affiliation_strings":["Bioinformatique g\u00e9nomique et structurale, Universit\u00e9 Libre de Bruxelles, Av. Fr. Roosevelt 50, CP165/61, 1050, Brussels, Belgium","Bioinformatique G\u00e9nomique et Structurale, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatique g\u00e9nomique et structurale, Universit\u00e9 Libre de Bruxelles, Av. Fr. Roosevelt 50, CP165/61, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Bioinformatique G\u00e9nomique et Structurale, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068948301","display_name":"Dimitri Gilis","orcid":"https://orcid.org/0000-0001-9009-9996"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Dimitri Gilis","raw_affiliation_strings":["Bioinformatique g\u00e9nomique et structurale, Universit\u00e9 Libre de Bruxelles, Av. Fr. Roosevelt 50, CP165/61, 1050, Brussels, Belgium","Bioinformatique G\u00e9nomique et Structurale, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatique g\u00e9nomique et structurale, Universit\u00e9 Libre de Bruxelles, Av. Fr. Roosevelt 50, CP165/61, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Bioinformatique G\u00e9nomique et Structurale, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073330873","display_name":"Marianne Rooman","orcid":"https://orcid.org/0000-0002-3810-7802"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Marianne Rooman","raw_affiliation_strings":["Bioinformatique g\u00e9nomique et structurale, Universit\u00e9 Libre de Bruxelles, Av. Fr. Roosevelt 50, CP165/61, 1050, Brussels, Belgium","Bioinformatique G\u00e9nomique et Structurale, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatique g\u00e9nomique et structurale, Universit\u00e9 Libre de Bruxelles, Av. Fr. Roosevelt 50, CP165/61, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Bioinformatique G\u00e9nomique et Structurale, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5091466337"],"corresponding_institution_ids":["https://openalex.org/I132053463"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":7.7792,"has_fulltext":true,"cited_by_count":568,"citation_normalized_percentile":{"value":0.98351559,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"12","issue":"1","first_page":"151","last_page":"151"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.8176000118255615,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.8176000118255615,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.04309999942779541,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11124","display_name":"Protein purification and stability","score":0.011300000362098217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.6895108222961426},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6676904559135437},{"id":"https://openalex.org/keywords/outlier","display_name":"Outlier","score":0.5905100703239441},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5533016324043274},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.5301773548126221},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.49911046028137207},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4747633934020996},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.42024242877960205},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3212372660636902},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30462217330932617},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2746816873550415},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.18068930506706238},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14583677053451538},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10004696249961853},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.09237155318260193},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08663731813430786}],"concepts":[{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.6895108222961426},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6676904559135437},{"id":"https://openalex.org/C79337645","wikidata":"https://www.wikidata.org/wiki/Q779824","display_name":"Outlier","level":2,"score":0.5905100703239441},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5533016324043274},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.5301773548126221},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.49911046028137207},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4747633934020996},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.42024242877960205},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3212372660636902},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30462217330932617},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2746816873550415},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.18068930506706238},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14583677053451538},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10004696249961853},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.09237155318260193},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08663731813430786},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-12-151","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-151","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-12-151.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21569468","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21569468","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3113940","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3113940","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:dipot.ulb.ac.be:2013/92196","is_oa":true,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/92196","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC bioinformatics, 12","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:1bcf005251e845c6aae2681425540445","is_oa":true,"landing_page_url":"https://doaj.org/article/1bcf005251e845c6aae2681425540445","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 151 (2011)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-151","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-151","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-12-151.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.47999998927116394,"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321390","display_name":"Fonds De La Recherche Scientifique - FNRS","ror":"https://ror.org/03q83t159"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2031553026.pdf","grobid_xml":"https://content.openalex.org/works/W2031553026.grobid-xml"},"referenced_works_count":73,"referenced_works":["https://openalex.org/W156668974","https://openalex.org/W1571577887","https://openalex.org/W1625910593","https://openalex.org/W1964640688","https://openalex.org/W1968733906","https://openalex.org/W1971255156","https://openalex.org/W1992085649","https://openalex.org/W1997143265","https://openalex.org/W2003890287","https://openalex.org/W2005862188","https://openalex.org/W2015341379","https://openalex.org/W2015674908","https://openalex.org/W2019574765","https://openalex.org/W2025670719","https://openalex.org/W2026370952","https://openalex.org/W2029999655","https://openalex.org/W2032089739","https://openalex.org/W2032626077","https://openalex.org/W2055497972","https://openalex.org/W2056618461","https://openalex.org/W2057271915","https://openalex.org/W2069337540","https://openalex.org/W2074002527","https://openalex.org/W2078866107","https://openalex.org/W2079318633","https://openalex.org/W2079934277","https://openalex.org/W2085657257","https://openalex.org/W2090799488","https://openalex.org/W2092189458","https://openalex.org/W2092387745","https://openalex.org/W2093847279","https://openalex.org/W2101301747","https://openalex.org/W2102524821","https://openalex.org/W2108367936","https://openalex.org/W2115503115","https://openalex.org/W2116607732","https://openalex.org/W2118468592","https://openalex.org/W2119288062","https://openalex.org/W2121519777","https://openalex.org/W2122536720","https://openalex.org/W2124307758","https://openalex.org/W2125677968","https://openalex.org/W2126311442","https://openalex.org/W2126491689","https://openalex.org/W2127981150","https://openalex.org/W2128037544","https://openalex.org/W2130479394","https://openalex.org/W2131302950","https://openalex.org/W2132395520","https://openalex.org/W2132540199","https://openalex.org/W2133425057","https://openalex.org/W2134759124","https://openalex.org/W2135118987","https://openalex.org/W2135374184","https://openalex.org/W2135503340","https://openalex.org/W2135769863","https://openalex.org/W2136447744","https://openalex.org/W2136513422","https://openalex.org/W2145317354","https://openalex.org/W2145953028","https://openalex.org/W2153613893","https://openalex.org/W2156205968","https://openalex.org/W2156606637","https://openalex.org/W2158889762","https://openalex.org/W2165181282","https://openalex.org/W2168749685","https://openalex.org/W2169546600","https://openalex.org/W2171610577","https://openalex.org/W2171741848","https://openalex.org/W2172034373","https://openalex.org/W2181723522","https://openalex.org/W2916078022","https://openalex.org/W4251926840"],"related_works":["https://openalex.org/W3006513224","https://openalex.org/W2046456988","https://openalex.org/W2357409937","https://openalex.org/W2978674666","https://openalex.org/W2074430941","https://openalex.org/W2145118195","https://openalex.org/W2107326055","https://openalex.org/W3118344282","https://openalex.org/W2117699649","https://openalex.org/W2146674646"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,282],"rational":[2,340],"design":[3],"of":[4,11,18,51,54,86,96,107,120,131,167,173,176,188,201,230,241,251,264,297],"modified":[5],"proteins":[6,28],"with":[7,183,301,336],"controlled":[8],"stability":[9,73,113,133,187,304],"is":[10,65,124,153,159,217,267,288],"extreme":[12],"importance":[13],"in":[14,21,40,80,115,140,145,156,180,224,339],"a":[15,66,83,141,148,249,258,295],"whole":[16],"range":[17],"applications,":[19],"notably":[20],"the":[22,52,60,71,93,97,129,132,171,174,181,186,189,225,228,239,302],"biotechnological":[23],"and":[24,111,158,227,255],"environmental":[25],"areas,":[26],"where":[27],"are":[29],"used":[30,194,318],"for":[31,209,276,291],"their":[32],"catalytic":[33,253],"or":[34,233,332],"other":[35],"functional":[36,234],"activities.":[37],"Future":[38],"breakthroughs":[39],"medical":[41],"research":[42],"may":[43,192],"also":[44,218,316],"be":[45,193,312,317,329],"expected":[46,219],"from":[47,136],"an":[48],"improved":[49],"understanding":[50],"effect":[53],"naturally":[55],"occurring":[56],"disease-causing":[57],"mutations":[58,79,139,300],"on":[59,92,306],"molecular":[61],"level.":[62],"RESULTS:":[63],"PoPMuSiC-2.1":[64,285],"web":[67,286],"server":[68,169,287],"that":[69,257],"predicts":[70],"thermodynamic":[72],"changes":[74,134],"caused":[75],"by":[76],"single":[77],"site":[78],"proteins,":[81],"using":[82],"linear":[84],"combination":[85],"statistical":[87],"potentials":[88],"whose":[89],"coefficients":[90],"depend":[91],"solvent":[94],"accessibility":[95],"mutated":[98],"residue.":[99],"PoPMuSiC":[100,157],"presents":[101],"good":[102],"prediction":[103,130,226],"performances":[104],"(correlation":[105],"coefficient":[106],"0.8":[108],"between":[109],"predicted":[110],"measured":[112],"changes,":[114],"cross":[116],"validation,":[117],"after":[118],"exclusion":[119],"10%":[121],"outliers).":[122],"It":[123,191,314],"moreover":[125],"very":[126,293],"fast,":[127],"allowing":[128],"resulting":[135],"all":[137],"possible":[138],"medium":[142],"size":[143],"protein":[144,235,341],"less":[146],"than":[147,261,279],"minute.":[149],"This":[150,213],"unique":[151],"functionality":[152,166],"user-friendly":[154],"implemented":[155],"particularly":[160,206],"easy":[161],"to":[162,185,195,220,248,319,324],"exploit.":[163],"Another":[164],"new":[165,243],"our":[168],"concerns":[170],"estimation":[172],"optimality":[175,215],"each":[177],"amino":[178],"acid":[179],"sequence,":[182],"respect":[184],"structure.":[190],"detect":[196,320],"structural":[197,232,265,325],"weaknesses,":[198,326],"i.e.":[199],"clusters":[200],"non-optimal":[202],"residues,":[203],"which":[204,307,327],"represent":[205],"interesting":[207],"sites":[208,272],"introducing":[210],"targeted":[211],"mutations.":[212],"sequence":[214,321],"data":[216],"have":[221,273],"significant":[222],"implications":[223],"analysis":[229],"particular":[231],"regions.":[236],"To":[237],"illustrate":[238],"interest":[240],"this":[242],"functionality,":[244],"we":[245],"apply":[246],"it":[247],"dataset":[250],"known":[252],"sites,":[254],"show":[256],"much":[259],"larger":[260],"average":[262],"concentration":[263],"weaknesses":[266],"detected,":[268],"quantifying":[269],"how":[270],"these":[271],"been":[274],"optimized":[275],"function":[277],"rather":[278],"stability.":[280],"CONCLUSION:":[281],"freely":[283],"available":[284],"highly":[289],"useful":[290],"identifying":[292],"rapidly":[294],"list":[296],"possibly":[298],"relevant":[299],"desired":[303],"properties,":[305],"subsequent":[308],"experimental":[309],"studies":[310],"can":[311,315],"focused.":[313],"regions":[322],"corresponding":[323],"could":[328],"functionally":[330],"important":[331],"structurally":[333],"delicate":[334],"regions,":[335],"obvious":[337],"applications":[338],"design.":[342]},"counts_by_year":[{"year":2026,"cited_by_count":23},{"year":2025,"cited_by_count":41},{"year":2024,"cited_by_count":59},{"year":2023,"cited_by_count":53},{"year":2022,"cited_by_count":38},{"year":2021,"cited_by_count":60},{"year":2020,"cited_by_count":59},{"year":2019,"cited_by_count":45},{"year":2018,"cited_by_count":25},{"year":2017,"cited_by_count":28},{"year":2016,"cited_by_count":41},{"year":2015,"cited_by_count":32},{"year":2014,"cited_by_count":24},{"year":2013,"cited_by_count":23},{"year":2012,"cited_by_count":15}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
