{"id":"https://openalex.org/W2155598445","doi":"https://doi.org/10.1186/1471-2105-12-150","title":"A user-friendly web portal for T-Coffee on supercomputers","display_name":"A user-friendly web portal for T-Coffee on supercomputers","publication_year":2011,"publication_date":"2011-05-12","ids":{"openalex":"https://openalex.org/W2155598445","doi":"https://doi.org/10.1186/1471-2105-12-150","mag":"2155598445","pmid":"https://pubmed.ncbi.nlm.nih.gov/21569428"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-150","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-150","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-150","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-150","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001708745","display_name":"Josep Rius","orcid":"https://orcid.org/0000-0003-2783-6230"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Josep Rius","raw_affiliation_strings":["Department of Computer Science and Industrial Engineering, University of Lleida, C/Jaume II 69, E-25001 Lleida, Spain. jrius@diei.udl.cat","Department of Computer Science and Industrial Engineering, University of Lleida, C/Jaume II 69, E-25001, Lleida, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Industrial Engineering, University of Lleida, C/Jaume II 69, E-25001 Lleida, Spain. jrius@diei.udl.cat","institution_ids":["https://openalex.org/I15766328"]},{"raw_affiliation_string":"Department of Computer Science and Industrial Engineering, University of Lleida, C/Jaume II 69, E-25001, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068472593","display_name":"Fernando Cores","orcid":"https://orcid.org/0000-0003-2910-6709"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Fernando Cores","raw_affiliation_strings":["Department of Computer Science and Industrial Engineering, University of Lleida, C/Jaume II 69, E-25001, Lleida, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Industrial Engineering, University of Lleida, C/Jaume II 69, E-25001, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070309620","display_name":"Francesc Solsona","orcid":"https://orcid.org/0000-0002-4830-9184"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Francesc Solsona","raw_affiliation_strings":["Department of Computer Science and Industrial Engineering, University of Lleida, C/Jaume II 69, E-25001, Lleida, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Industrial Engineering, University of Lleida, C/Jaume II 69, E-25001, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053639270","display_name":"Jano van Hemert","orcid":"https://orcid.org/0000-0003-0834-7079"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jano I van Hemert","raw_affiliation_strings":["UK National e-Science Centre, University of Edinburgh, 10 Crichton Street, EH8 9AB, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UK National e-Science Centre, University of Edinburgh, 10 Crichton Street, EH8 9AB, Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017271222","display_name":"Jos Koetsier","orcid":null},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jos Koetsier","raw_affiliation_strings":["UK National e-Science Centre, University of Edinburgh, 10 Crichton Street, EH8 9AB, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UK National e-Science Centre, University of Edinburgh, 10 Crichton Street, EH8 9AB, Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058332830","display_name":"C\u00e9dric Notredame","orcid":"https://orcid.org/0000-0003-1461-0988"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Cedric Notredame","raw_affiliation_strings":["Centre For Genomic Regulation (Pompeu Fabra University), C/Doctor Aiguader 88, 08003, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre For Genomic Regulation (Pompeu Fabra University), C/Doctor Aiguader 88, 08003, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5001708745"],"corresponding_institution_ids":["https://openalex.org/I15766328"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.2434,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.56496531,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"12","issue":"1","first_page":"150","last_page":"150"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.19329999387264252,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.19329999387264252,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.1867000013589859,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.11580000072717667,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8378749489784241},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6813138127326965},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.5347586870193481},{"id":"https://openalex.org/keywords/user-friendly","display_name":"User Friendly","score":0.4752635359764099},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4496123492717743},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.43772467970848083},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.4308936893939972},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.35896551609039307},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.33973586559295654}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8378749489784241},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6813138127326965},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.5347586870193481},{"id":"https://openalex.org/C61437842","wikidata":"https://www.wikidata.org/wiki/Q281291","display_name":"User Friendly","level":2,"score":0.4752635359764099},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4496123492717743},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.43772467970848083},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.4308936893939972},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.35896551609039307},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.33973586559295654},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-12-150","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-150","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-150","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21569428","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21569428","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:dnet:raudl_______::2d35aabbed64bb5dbabcc278692255d2","is_oa":true,"landing_page_url":"http://hdl.handle.net/10459.1/41533","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pure.ed.ac.uk:openaire/d70d8e9e-562d-49b7-8a23-fcb352983af4","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/d70d8e9e-562d-49b7-8a23-fcb352983af4","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Rius, J, Cores, F, Solsona, F, van Hemert, J I, Koetsier, J & Notredame, C 2011, 'A user-friendly web portal for T-Coffee on supercomputers', BMC Bioinformatics, vol. 12, 150. https://doi.org/10.1186/1471-2105-12-150","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:743f99c8730542f2a2529e7cb56a2137","is_oa":false,"landing_page_url":"https://doaj.org/article/743f99c8730542f2a2529e7cb56a2137","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 150 (2011)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3112243","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3112243","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.ed.ac.uk:publications/d70d8e9e-562d-49b7-8a23-fcb352983af4","is_oa":false,"landing_page_url":"https://hdl.handle.net/20.500.11820/d70d8e9e-562d-49b7-8a23-fcb352983af4","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-150","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-150","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-150","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4300000071525574,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1763678859","display_name":"Intuitive Large-scale Image Processing for Biologists","funder_award_id":"BB/I001662/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G2946972273","display_name":null,"funder_award_id":"BB/I001662/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8382083128","display_name":null,"funder_award_id":"222664","funder_id":"https://openalex.org/F4320338366","funder_display_name":"FP7 Food, Agriculture and Fisheries, Biotechnology"}],"funders":[{"id":"https://openalex.org/F4320320309","display_name":"Joint Information Systems Committee","ror":"https://ror.org/01rv9gx86"},{"id":"https://openalex.org/F4320321600","display_name":"Departament d'Innovaci\u00f3, Universitats i Empresa, Generalitat de Catalunya","ror":"https://ror.org/01bg62x04"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320334631","display_name":"Natural Environment Research Council","ror":"https://ror.org/02b5d8509"},{"id":"https://openalex.org/F4320338366","display_name":"FP7 Food, Agriculture and Fisheries, Biotechnology","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2155598445.pdf","grobid_xml":"https://content.openalex.org/works/W2155598445.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1564285798","https://openalex.org/W2001134403","https://openalex.org/W2033339460","https://openalex.org/W2130625618","https://openalex.org/W2140872496","https://openalex.org/W2141885858","https://openalex.org/W2144362290","https://openalex.org/W2168614088","https://openalex.org/W2184539420","https://openalex.org/W2709625040","https://openalex.org/W3095583226","https://openalex.org/W3150974748","https://openalex.org/W4210323379"],"related_works":["https://openalex.org/W2372117511","https://openalex.org/W1983811306","https://openalex.org/W2365093105","https://openalex.org/W2371012949","https://openalex.org/W2117014006","https://openalex.org/W1513409726","https://openalex.org/W2292891061","https://openalex.org/W2970900071","https://openalex.org/W2348660882","https://openalex.org/W2369055061"],"abstract_inverted_index":{"BACKGROUND:":[0],"Parallel":[1],"T-Coffee":[2,11],"(PTC)":[3],"was":[4],"the":[5,10,29,33,63,73,121,159],"first":[6],"parallel":[7,160],"implementation":[8],"of":[9,32,52,54,62,66,75,118,153,162],"multiple":[12],"sequence":[13,35],"alignment":[14],"tool.":[15],"It":[16,37],"is":[17,26,106,125],"based":[18],"on":[19,41,93,138],"MPI":[20],"and":[21,91,120,175],"RMA":[22],"mechanisms.":[23],"Its":[24],"purpose":[25],"to":[27,47,128,131,135,148,155,173],"reduce":[28],"execution":[30,176],"time":[31,177],"large-scale":[34],"alignments.":[36],"can":[38,87],"be":[39,88,129,156,166],"run":[40],"distributed":[42],"memory":[43,174],"clusters":[44],"allowing":[45],"users":[46,65,147],"align":[48],"data":[49],"sets":[50],"consisting":[51],"hundreds":[53],"proteins":[55],"within":[56],"a":[57,94,99,107,115,150,169,183],"reasonable":[58],"time.":[59],"However,":[60],"most":[61],"potential":[64],"this":[67,81],"tool":[68,108],"are":[69],"not":[70],"familiar":[71],"with":[72],"use":[74],"grids":[76],"or":[77,134],"supercomputers.":[78],"RESULTS:":[79],"In":[80],"paper":[82],"we":[83],"show":[84],"how":[85],"PTC":[86,137,144],"easily":[89],"deployed":[90],"controlled":[92],"super":[95],"computer":[96],"architecture":[97],"using":[98,103],"web":[100,180],"portal":[101,145,181],"developed":[102],"Rapid.":[104],"Rapid":[105],"for":[109,114],"efficiently":[110],"generating":[111],"standardized":[112],"portlets":[113],"wide":[116],"range":[117],"applications":[119],"approach":[122],"described":[123],"here":[124],"generic":[126],"enough":[127],"applied":[130],"other":[132],"applications,":[133],"deploy":[136],"different":[139],"HPC":[140],"environments.":[141],"CONCLUSIONS:":[142],"The":[143,179],"allows":[146],"upload":[149],"large":[151],"number":[152],"sequences":[154],"aligned":[157,167],"by":[158,168],"version":[161],"TC":[163],"that":[164],"cannot":[165],"single":[170],"machine":[171],"due":[172],"constraints.":[178],"provides":[182],"user-friendly":[184],"solution.":[185]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2014,"cited_by_count":2}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
