{"id":"https://openalex.org/W2084322556","doi":"https://doi.org/10.1186/1471-2105-12-109","title":"PheMaDB: A solution for storage, retrieval, and analysis of high throughput phenotype data","display_name":"PheMaDB: A solution for storage, retrieval, and analysis of high throughput phenotype data","publication_year":2011,"publication_date":"2011-04-20","ids":{"openalex":"https://openalex.org/W2084322556","doi":"https://doi.org/10.1186/1471-2105-12-109","mag":"2084322556","pmid":"https://pubmed.ncbi.nlm.nih.gov/21507258"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-12-109","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-109","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-109","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-109","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017790853","display_name":"Wenling E. Chang","orcid":null},"institutions":[{"id":"https://openalex.org/I44896327","display_name":"Mitre (United States)","ror":"https://ror.org/03ks2a131","country_code":"US","type":"company","lineage":["https://openalex.org/I44896327"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Wenling E Chang","raw_affiliation_strings":["Biotechnology, The MITRE Corporation, McLean, VA, USA. wchang@mitre.org","Biotechnology, The MITRE Corporation, McLean, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology, The MITRE Corporation, McLean, VA, USA. wchang@mitre.org","institution_ids":["https://openalex.org/I44896327"]},{"raw_affiliation_string":"Biotechnology, The MITRE Corporation, McLean, USA","institution_ids":["https://openalex.org/I44896327"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001969317","display_name":"Keri Sarver","orcid":null},"institutions":[{"id":"https://openalex.org/I44896327","display_name":"Mitre (United States)","ror":"https://ror.org/03ks2a131","country_code":"US","type":"company","lineage":["https://openalex.org/I44896327"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keri Sarver","raw_affiliation_strings":["Innovative Information Engineering and Biometrics, The MITRE Corporation, McLean, VA, USA","Innovative Information Engineering and Biometrics, The MITRE Corporation, McLean, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Innovative Information Engineering and Biometrics, The MITRE Corporation, McLean, VA, USA","institution_ids":["https://openalex.org/I44896327"]},{"raw_affiliation_string":"Innovative Information Engineering and Biometrics, The MITRE Corporation, McLean, USA","institution_ids":["https://openalex.org/I44896327"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009504777","display_name":"Brandon W. Higgs","orcid":"https://orcid.org/0000-0002-2951-0245"},"institutions":[{"id":"https://openalex.org/I44896327","display_name":"Mitre (United States)","ror":"https://ror.org/03ks2a131","country_code":"US","type":"company","lineage":["https://openalex.org/I44896327"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brandon W Higgs","raw_affiliation_strings":["Biotechnology, The MITRE Corporation, McLean, VA, USA","Biotechnology, The MITRE Corporation, McLean, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology, The MITRE Corporation, McLean, VA, USA","institution_ids":["https://openalex.org/I44896327"]},{"raw_affiliation_string":"Biotechnology, The MITRE Corporation, McLean, USA","institution_ids":["https://openalex.org/I44896327"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050672427","display_name":"Timothy D. Read","orcid":"https://orcid.org/0000-0001-8966-9680"},"institutions":[{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]},{"id":"https://openalex.org/I1312537475","display_name":"Naval Medical Research Command","ror":"https://ror.org/05f421b09","country_code":"US","type":"facility","lineage":["https://openalex.org/I1312537475","https://openalex.org/I1330347796","https://openalex.org/I3130687028","https://openalex.org/I4391768141"]},{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]},{"id":"https://openalex.org/I4210100506","display_name":"Jackson Foundation","ror":"https://ror.org/00jkq3860","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210100506"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Timothy D Read","raw_affiliation_strings":["Department of Medicine, Division of Infectious Disease and Department of Human Genetics, Emory University School of Medicine, Atlanta, GA, USA","Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, MD, USA","Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, USA","Department of Medicine, Division of Infectious Disease and Department of Human Genetics, Emory University School of Medicine, Atlanta, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, Division of Infectious Disease and Department of Human Genetics, Emory University School of Medicine, Atlanta, GA, USA","institution_ids":["https://openalex.org/I150468666"]},{"raw_affiliation_string":"Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, MD, USA","institution_ids":["https://openalex.org/I4210100506","https://openalex.org/I1312537475"]},{"raw_affiliation_string":"Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, USA","institution_ids":["https://openalex.org/I4210100506","https://openalex.org/I1312537475","https://openalex.org/I1280259254"]},{"raw_affiliation_string":"Department of Medicine, Division of Infectious Disease and Department of Human Genetics, Emory University School of Medicine, Atlanta, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062892519","display_name":"Nichole Nolan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210100506","display_name":"Jackson Foundation","ror":"https://ror.org/00jkq3860","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210100506"]},{"id":"https://openalex.org/I1312537475","display_name":"Naval Medical Research Command","ror":"https://ror.org/05f421b09","country_code":"US","type":"facility","lineage":["https://openalex.org/I1312537475","https://openalex.org/I1330347796","https://openalex.org/I3130687028","https://openalex.org/I4391768141"]},{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nichole ME Nolan","raw_affiliation_strings":["Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, MD, USA","Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, MD, USA","institution_ids":["https://openalex.org/I4210100506","https://openalex.org/I1312537475"]},{"raw_affiliation_string":"Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, USA","institution_ids":["https://openalex.org/I4210100506","https://openalex.org/I1312537475","https://openalex.org/I1280259254"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017467718","display_name":"Carol Chapman","orcid":null},"institutions":[{"id":"https://openalex.org/I4210100506","display_name":"Jackson Foundation","ror":"https://ror.org/00jkq3860","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210100506"]},{"id":"https://openalex.org/I1312537475","display_name":"Naval Medical Research Command","ror":"https://ror.org/05f421b09","country_code":"US","type":"facility","lineage":["https://openalex.org/I1312537475","https://openalex.org/I1330347796","https://openalex.org/I3130687028","https://openalex.org/I4391768141"]},{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carol E Chapman","raw_affiliation_strings":["Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, MD, USA","Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, MD, USA","institution_ids":["https://openalex.org/I4210100506","https://openalex.org/I1312537475"]},{"raw_affiliation_string":"Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, USA","institution_ids":["https://openalex.org/I4210100506","https://openalex.org/I1312537475","https://openalex.org/I1280259254"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070837489","display_name":"Kimberly A. Bishop\u2010Lilly","orcid":"https://orcid.org/0000-0002-5744-8493"},"institutions":[{"id":"https://openalex.org/I1312537475","display_name":"Naval Medical Research Command","ror":"https://ror.org/05f421b09","country_code":"US","type":"facility","lineage":["https://openalex.org/I1312537475","https://openalex.org/I1330347796","https://openalex.org/I3130687028","https://openalex.org/I4391768141"]},{"id":"https://openalex.org/I4210100506","display_name":"Jackson Foundation","ror":"https://ror.org/00jkq3860","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210100506"]},{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kimberly A Bishop-Lilly","raw_affiliation_strings":["Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, MD, USA","Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, MD, USA","institution_ids":["https://openalex.org/I4210100506","https://openalex.org/I1312537475"]},{"raw_affiliation_string":"Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, USA","institution_ids":["https://openalex.org/I4210100506","https://openalex.org/I1312537475","https://openalex.org/I1280259254"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012510264","display_name":"Shanmuga Sozhamannan","orcid":"https://orcid.org/0000-0002-6762-7874"},"institutions":[{"id":"https://openalex.org/I4210100506","display_name":"Jackson Foundation","ror":"https://ror.org/00jkq3860","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210100506"]},{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]},{"id":"https://openalex.org/I1312537475","display_name":"Naval Medical Research Command","ror":"https://ror.org/05f421b09","country_code":"US","type":"facility","lineage":["https://openalex.org/I1312537475","https://openalex.org/I1330347796","https://openalex.org/I3130687028","https://openalex.org/I4391768141"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shanmuga Sozhamannan","raw_affiliation_strings":["Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, MD, USA","Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, MD, USA","institution_ids":["https://openalex.org/I4210100506","https://openalex.org/I1312537475"]},{"raw_affiliation_string":"Naval Medical Research Center, Biological Defense Research Directorate, Silver Spring, MD, USA and Henry M. Jackson Foundation, Rockville, USA","institution_ids":["https://openalex.org/I4210100506","https://openalex.org/I1312537475","https://openalex.org/I1280259254"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5017790853"],"corresponding_institution_ids":["https://openalex.org/I44896327"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.0642,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.76108255,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"12","issue":"1","first_page":"109","last_page":"109"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.5924000144004822,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.5924000144004822,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.025699999183416367,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.023900000378489494,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6945645213127136},{"id":"https://openalex.org/keywords/replicate","display_name":"Replicate","score":0.6560527086257935},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5731210708618164},{"id":"https://openalex.org/keywords/outlier","display_name":"Outlier","score":0.47650375962257385},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4496845602989197},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.42168277502059937},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.4178014397621155},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3283390998840332},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32719600200653076},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19179362058639526},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1843680739402771},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.12233003973960876},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0861177146434784}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6945645213127136},{"id":"https://openalex.org/C2781162219","wikidata":"https://www.wikidata.org/wiki/Q26250693","display_name":"Replicate","level":2,"score":0.6560527086257935},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5731210708618164},{"id":"https://openalex.org/C79337645","wikidata":"https://www.wikidata.org/wiki/Q779824","display_name":"Outlier","level":2,"score":0.47650375962257385},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4496845602989197},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.42168277502059937},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.4178014397621155},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3283390998840332},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32719600200653076},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19179362058639526},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1843680739402771},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.12233003973960876},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0861177146434784},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001408","descriptor_name":"Bacillus anthracis","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001408","descriptor_name":"Bacillus anthracis","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001408","descriptor_name":"Bacillus anthracis","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001408","descriptor_name":"Bacillus anthracis","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D001408","descriptor_name":"Bacillus anthracis","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D001408","descriptor_name":"Bacillus anthracis","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D001408","descriptor_name":"Bacillus anthracis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001408","descriptor_name":"Bacillus anthracis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001408","descriptor_name":"Bacillus anthracis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046228","descriptor_name":"Microarray Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046228","descriptor_name":"Microarray Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046228","descriptor_name":"Microarray Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-12-109","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-109","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-109","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21507258","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21507258","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:690e09a05c1449379981947e91b978b2","is_oa":true,"landing_page_url":"https://doaj.org/article/690e09a05c1449379981947e91b978b2","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 12, Iss 1, p 109 (2011)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3097161","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3097161","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-12-109","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-12-109","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-12-109","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4000000059604645,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306078","display_name":"U.S. Department of Defense","ror":"https://ror.org/0447fe631"},{"id":"https://openalex.org/F4320309029","display_name":"George Mason University","ror":"https://ror.org/02jqj7156"},{"id":"https://openalex.org/F4320332186","display_name":"Defense Threat Reduction Agency","ror":"https://ror.org/04tz64554"},{"id":"https://openalex.org/F4320332923","display_name":"U.S. Navy","ror":"https://ror.org/03ar0mv07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2084322556.pdf","grobid_xml":"https://content.openalex.org/works/W2084322556.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W1967383680","https://openalex.org/W1979722126","https://openalex.org/W2006691557","https://openalex.org/W2123099637","https://openalex.org/W2616754551"],"related_works":["https://openalex.org/W4254851101","https://openalex.org/W3171007296","https://openalex.org/W22115721","https://openalex.org/W2211931904","https://openalex.org/W2065444835","https://openalex.org/W2321234655","https://openalex.org/W2952773340","https://openalex.org/W2470062578","https://openalex.org/W2981861370","https://openalex.org/W3200375535"],"abstract_inverted_index":{"BACKGROUND:":[0],"OmniLog\u2122":[1,51,73,176],"phenotype":[2,163,187],"microarrays":[3],"(PMs)":[4],"have":[5],"the":[6,12,43,50,72,79,117,182],"capability":[7],"to":[8,20,37,41,81,110,162],"measure":[9],"and":[10,29,68,101,140,159,184],"compare":[11],"growth":[13,23,113,134],"responses":[14],"of":[15,22,35,46,71,85,96,116,165,186],"biological":[16],"samples":[17],"upon":[18],"exposure":[19],"hundreds":[21],"conditions":[24],"such":[25,120],"as":[26],"different":[27],"metabolites":[28],"antibiotics":[30],"over":[31],"a":[32,57,93,141],"time":[33],"course":[34],"hours":[36],"days.":[38],"In":[39],"order":[40],"manage":[42],"large":[44],"amount":[45],"data":[47,88,154],"produced":[48],"from":[49],"instrument,":[52],"PheMaDB":[53,63,77,103,168,179],"(Phenotype":[54],"Microarray":[55],"DataBase),":[56],"web-based":[58,146],"relational":[59],"database,":[60],"was":[61],"designed.":[62],"enables":[64],"efficient":[65],"storage,":[66],"retrieval":[67],"rapid":[69],"analysis":[70,89,108,126],"PM":[74,177],"data.":[75,178,188],"DESCRIPTION:":[76],"allows":[78,150],"user":[80],"quickly":[82],"identify":[83,111],"records":[84],"interest":[86],"for":[87,151,175,194],"by":[90],"filtering":[91],"with":[92],"hierarchical":[94],"ordering":[95],"Project,":[97],"Strain,":[98],"Phenotype,":[99],"Replicate,":[100],"Temperature.":[102],"then":[104],"provides":[105],"various":[106],"statistical":[107],"options":[109],"specific":[112],"pattern":[114],"characteristics":[115],"experimental":[118],"strains,":[119],"as:":[121],"outlier":[122],"analysis,":[123],"negative":[124],"controls":[125],"(signal/background":[127],"calibration),":[128],"bar":[129],"plots,":[130],"pearson's":[131],"correlation":[132],"matrix,":[133],"curve":[135],"profile":[136],"search,":[137],"k-means":[138],"clustering,":[139],"heat":[142],"map":[143],"plot.":[144],"This":[145],"database":[147],"management":[148],"system":[149,173],"both":[152],"easy":[153],"sharing":[155,185],"among":[156],"multiple":[157],"users":[158],"robust":[160],"tools":[161],"organisms":[164],"interest.":[166],"CONCLUSIONS:":[167],"is":[169,192],"an":[170],"open":[171],"source":[172,190],"standardized":[174],"could":[180],"facilitate":[181],"banking":[183],"The":[189],"code":[191],"available":[193],"download":[195],"at":[196],"http://phemadb.sourceforge.net.":[197]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":4}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
