{"id":"https://openalex.org/W2066720838","doi":"https://doi.org/10.1186/1471-2105-11-s6-s15","title":"Next generation models for storage and representation of microbial biological annotation","display_name":"Next generation models for storage and representation of microbial biological annotation","publication_year":2010,"publication_date":"2010-10-01","ids":{"openalex":"https://openalex.org/W2066720838","doi":"https://doi.org/10.1186/1471-2105-11-s6-s15","mag":"2066720838","pmid":"https://pubmed.ncbi.nlm.nih.gov/20946598"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-s6-s15","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s6-s15","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S6-S15","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S6-S15","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042633311","display_name":"Daniel Quest","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Daniel J Quest","raw_affiliation_strings":["Biosciences Division, Oak Ridge National Laboratory, P.O. Box 2008, Oak Ridge, TN 37831-6420, USA. questdj@ornl.gov","Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biosciences Division, Oak Ridge National Laboratory, P.O. Box 2008, Oak Ridge, TN 37831-6420, USA. questdj@ornl.gov","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011194879","display_name":"Miriam Land","orcid":"https://orcid.org/0000-0001-7102-0031"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Miriam L Land","raw_affiliation_strings":["Biosciences Division, Oak Ridge National Laboratory, P.O. Box 2008, Oak Ridge, TN, 37831-6420, USA","Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biosciences Division, Oak Ridge National Laboratory, P.O. Box 2008, Oak Ridge, TN, 37831-6420, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046675967","display_name":"Thomas Brettin","orcid":"https://orcid.org/0000-0001-9301-9760"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas S Brettin","raw_affiliation_strings":["Biosciences Division, Oak Ridge National Laboratory, P.O. Box 2008, Oak Ridge, TN, 37831-6420, USA","Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biosciences Division, Oak Ridge National Laboratory, P.O. Box 2008, Oak Ridge, TN, 37831-6420, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068737378","display_name":"Robert W. Cottingham","orcid":"https://orcid.org/0000-0002-2775-3905"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert W Cottingham","raw_affiliation_strings":["Biosciences Division, Oak Ridge National Laboratory, P.O. Box 2008, Oak Ridge, TN, 37831-6420, USA","Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biosciences Division, Oak Ridge National Laboratory, P.O. Box 2008, Oak Ridge, TN, 37831-6420, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, USA","institution_ids":["https://openalex.org/I1289243028"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5042633311"],"corresponding_institution_ids":["https://openalex.org/I1289243028"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.2489,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.56150268,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"11","issue":"S6","first_page":"S15","last_page":"S15"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.862500011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.862500011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.03700000047683716,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.02879999950528145,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5702521204948425},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5131188035011292},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4740854501724243},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46868422627449036},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.44765153527259827},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3634977340698242},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35424456000328064},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20662254095077515},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12908193469047546}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5702521204948425},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5131188035011292},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4740854501724243},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46868422627449036},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.44765153527259827},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3634977340698242},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35424456000328064},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20662254095077515},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12908193469047546},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-11-s6-s15","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s6-s15","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S6-S15","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20946598","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20946598","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:osti.gov:1626276","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1626276","pdf_url":"https://www.osti.gov/servlets/purl/1626276","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3026362","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3026362","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-s6-s15","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s6-s15","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S6-S15","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1489425746","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1528409558","display_name":null,"funder_award_id":"No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1637692498","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G1645119126","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2757267231","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"},{"id":"https://openalex.org/G3049477530","display_name":null,"funder_award_id":"Contract No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3121793570","display_name":null,"funder_award_id":"00OR22725","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G4423657506","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G4957472368","display_name":null,"funder_award_id":". DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5726405315","display_name":null,"funder_award_id":"DE-AC05","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"},{"id":"https://openalex.org/G574648691","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320337547","funder_display_name":"Laboratory Directed Research and Development"},{"id":"https://openalex.org/G6129992089","display_name":null,"funder_award_id":"DE-AC05-","funder_id":"https://openalex.org/F4320316892","funder_display_name":"UT-Battelle"},{"id":"https://openalex.org/G6486853205","display_name":null,"funder_award_id":"Contract No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G675320460","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G6864165199","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"},{"id":"https://openalex.org/G6911681599","display_name":null,"funder_award_id":"No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7769062580","display_name":null,"funder_award_id":"No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320316892","funder_display_name":"UT-Battelle"},{"id":"https://openalex.org/G7995982022","display_name":null,"funder_award_id":"DE-AC05","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8269158468","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8813984943","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320316892","funder_display_name":"UT-Battelle"},{"id":"https://openalex.org/G8906985441","display_name":null,"funder_award_id":"00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8943143067","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320316892","funder_display_name":"UT-Battelle"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306250","display_name":"Battelle","ror":"https://ror.org/01h5tnr73"},{"id":"https://openalex.org/F4320316170","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337"},{"id":"https://openalex.org/F4320316892","display_name":"UT-Battelle","ror":"https://ror.org/04nza6677"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337509","display_name":"Biological and Environmental Research","ror":"https://ror.org/0114b2m14"},{"id":"https://openalex.org/F4320337547","display_name":"Laboratory Directed Research and Development","ror":"https://ror.org/01e41cf67"},{"id":"https://openalex.org/F4320338287","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2066720838.pdf","grobid_xml":"https://content.openalex.org/works/W2066720838.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W26602490","https://openalex.org/W133046572","https://openalex.org/W1482585805","https://openalex.org/W1542026696","https://openalex.org/W1555563750","https://openalex.org/W1670748022","https://openalex.org/W1673404489","https://openalex.org/W1827755136","https://openalex.org/W1965014786","https://openalex.org/W1990890881","https://openalex.org/W2004548026","https://openalex.org/W2046166587","https://openalex.org/W2053419354","https://openalex.org/W2087187521","https://openalex.org/W2100895966","https://openalex.org/W2101491706","https://openalex.org/W2103017472","https://openalex.org/W2109615707","https://openalex.org/W2110041134","https://openalex.org/W2123171788","https://openalex.org/W2135290856","https://openalex.org/W2137999759","https://openalex.org/W2139315672","https://openalex.org/W2143485490","https://openalex.org/W2145477956","https://openalex.org/W2150934173","https://openalex.org/W2151397621","https://openalex.org/W2158304452","https://openalex.org/W2159482845","https://openalex.org/W2164947858","https://openalex.org/W2301626106","https://openalex.org/W2767126550","https://openalex.org/W2798401172","https://openalex.org/W3010909650","https://openalex.org/W3147477526","https://openalex.org/W4241156921","https://openalex.org/W4285719527","https://openalex.org/W4294216483","https://openalex.org/W6629109498"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2556260348"],"abstract_inverted_index":{"BACKGROUND:":[0],"Traditional":[1],"genome":[2,204,299],"annotation":[3,36,64,97,114,220,224,267,300],"systems":[4,24,78,109,115,146,180,309],"were":[5],"developed":[6],"in":[7,185,203,262],"a":[8,52,186,194,245,276],"very":[9],"different":[10],"computing":[11,71],"era,":[12],"one":[13],"where":[14],"the":[15,96,295,308],"World":[16],"Wide":[17],"Web":[18,162,172],"was":[19],"just":[20],"emerging.":[21],"Consequently,":[22],"these":[23,183],"are":[25,141,147],"built":[26],"as":[27,165,244],"centralized":[28],"black":[29],"boxes":[30],"focused":[31],"on":[32],"generating":[33],"high":[34],"quality":[35,58],"submissions":[37],"to":[38,79,100,117,120,125,128,136,151,178,200,227,252,265,281,305],"GenBank/EMBL":[39,253],"supported":[40],"by":[41],"expert":[42],"manual":[43],"curation.":[44],"The":[45,158,256],"exponential":[46],"growth":[47],"of":[48,160,258],"sequence":[49,82],"data":[50,199,209,268],"drives":[51],"growing":[53],"need":[54],"for":[55,138,196],"increasingly":[56],"higher":[57],"and":[59,75,86,88,102,110,134,153,170,214,229,289,301],"automatically":[60],"generated":[61],"annotation.":[62,205],"Typical":[63],"pipelines":[65,225],"utilize":[66],"traditional":[67,198],"database":[68,108],"technologies,":[69],"clustered":[70],"resources,":[72],"Perl,":[73],"C,":[74],"UNIX":[76],"file":[77],"process":[80],"raw":[81],"data,":[83],"identify":[84],"genes,":[85],"predict":[87],"categorize":[89],"gene":[90],"function.":[91],"These":[92,145],"technologies":[93],"tightly":[94],"couple":[95],"software":[98,105,217],"system":[99],"hardware":[101,213],"third":[103,215],"party":[104,216],"(e.g.":[106],"relational":[107],"schemas).":[111],"This":[112],"makes":[113],"hard":[116],"reproduce,":[118],"inflexible":[119],"modification":[121],"over":[122],"time,":[123],"difficult":[124,127,135],"assess,":[126],"partition":[129],"across":[130,272],"multiple":[131,270,273],"geographic":[132],"sites,":[133],"understand":[137,294],"those":[139],"who":[140],"not":[142,148,155],"domain":[143],"experts.":[144],"readily":[149],"open":[150],"scrutiny":[152],"therefore":[154],"scientifically":[156],"tractable.":[157],"advent":[159],"Semantic":[161],"standards":[163,210],"such":[164],"Resource":[166],"Description":[167],"Framework":[168],"(RDF)":[169],"OWL":[171],"Ontology":[173],"Language":[174],"(OWL)":[175],"enables":[176],"us":[177],"construct":[179],"that":[181,278,310],"address":[182],"challenges":[184],"new":[187],"comprehensive":[188],"way.":[189],"RESULTS:":[190],"Here,":[191],"we":[192],"develop":[193],"framework":[195],"linking":[197],"OWL-based":[201],"ontologies":[202],"We":[206],"show":[207],"how":[208,235],"can":[211,241],"decouple":[212],"tools":[218],"from":[219,269],"pipelines,":[221],"thereby":[222],"making":[223],"easier":[226],"reproduce":[228],"assess.":[230],"An":[231],"illustrative":[232],"example":[233],"shows":[234],"TURTLE":[236],"(Terse":[237],"RDF":[238],"Triple":[239],"Language)":[240],"be":[242,303],"used":[243],"human":[246],"readable,":[247],"but":[248],"also":[249],"semantically-aware,":[250],"equivalent":[251],"files.":[254],"CONCLUSIONS:":[255],"power":[257],"this":[259,284],"approach":[260],"lies":[261],"its":[263],"ability":[264],"assemble":[266],"databases":[271],"locations":[274],"into":[275],"representation":[277],"is":[279],"understandable":[280],"researchers.":[282],"In":[283],"way,":[285],"all":[286],"researchers,":[287],"experimental":[288],"computational,":[290],"will":[291],"more":[292],"easily":[293],"informatics":[296],"processes":[297],"constructing":[298],"ultimately":[302],"able":[304],"help":[306],"improve":[307],"produce":[311],"them.":[312]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-25T09:21:30.201066","created_date":"2025-10-10T00:00:00"}
