{"id":"https://openalex.org/W2006138378","doi":"https://doi.org/10.1186/1471-2105-11-s6-s10","title":"Evaluation of gene expression data generated from expired Affymetrix GeneChip\u00ae microarrays using MAQC reference RNA samples","display_name":"Evaluation of gene expression data generated from expired Affymetrix GeneChip\u00ae microarrays using MAQC reference RNA samples","publication_year":2010,"publication_date":"2010-10-01","ids":{"openalex":"https://openalex.org/W2006138378","doi":"https://doi.org/10.1186/1471-2105-11-s6-s10","mag":"2006138378","pmid":"https://pubmed.ncbi.nlm.nih.gov/20946593"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-s6-s10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s6-s10","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S6-S10","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S6-S10","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007166385","display_name":"Zhining Wen","orcid":"https://orcid.org/0000-0002-0477-4906"},"institutions":[{"id":"https://openalex.org/I1304557061","display_name":"National Center for Toxicological Research","ror":"https://ror.org/05jmhh281","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I1320320070","display_name":"United States Food and Drug Administration","ror":"https://ror.org/034xvzb47","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhining Wen","raw_affiliation_strings":["Division of Systems Biology, National Center for Toxicological Research (NCTR), US Food and Drug Administration (FDA), 3900 NCTR Road, Jefferson, AR 72079, USA","Division of Systems Biology, National Center for Toxicological Research (NCTR), US Food and Drug Administration (FDA), Jefferson, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Systems Biology, National Center for Toxicological Research (NCTR), US Food and Drug Administration (FDA), 3900 NCTR Road, Jefferson, AR 72079, USA","institution_ids":["https://openalex.org/I1304557061"]},{"raw_affiliation_string":"Division of Systems Biology, National Center for Toxicological Research (NCTR), US Food and Drug Administration (FDA), Jefferson, USA","institution_ids":["https://openalex.org/I1304557061","https://openalex.org/I1320320070"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100778961","display_name":"Charles Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]},{"id":"https://openalex.org/I4210110459","display_name":"City of Hope","ror":"https://ror.org/01z1vct10","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1301076528","https://openalex.org/I4210110459"]},{"id":"https://openalex.org/I4387156432","display_name":"Beckman Research Institute","ror":"https://ror.org/05fazth07","country_code":null,"type":"facility","lineage":["https://openalex.org/I1301076528","https://openalex.org/I4387156432"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles Wang","raw_affiliation_strings":["David Geffen School of Medicine at UCLA, Los Angeles, CA, 90095, USA","Functional Genomics Core, Beckman Research Institute, City of Hope Comprehensive Cancer Center, 1710 Flower Avenue, Duarte, CA, 91010, USA","David Geffen School of Medicine at UCLA, Los Angeles, USA","Functional Genomics Core, Beckman Research Institute, City of Hope Comprehensive Cancer Center, Duarte, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"David Geffen School of Medicine at UCLA, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Functional Genomics Core, Beckman Research Institute, City of Hope Comprehensive Cancer Center, 1710 Flower Avenue, Duarte, CA, 91010, USA","institution_ids":["https://openalex.org/I4210110459"]},{"raw_affiliation_string":"David Geffen School of Medicine at UCLA, Los Angeles, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Functional Genomics Core, Beckman Research Institute, City of Hope Comprehensive Cancer Center, Duarte, USA","institution_ids":["https://openalex.org/I4210110459","https://openalex.org/I4387156432"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045586420","display_name":"Quan Shi","orcid":"https://orcid.org/0000-0001-8491-9548"},"institutions":[{"id":"https://openalex.org/I93393672","display_name":"Western University of Health Sciences","ror":"https://ror.org/05167c961","country_code":"US","type":"education","lineage":["https://openalex.org/I93393672"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Quan Shi","raw_affiliation_strings":["College of Pharmacy, Western University of Health Sciences, 309 E. Second Street, Pomona, CA, 91766, USA","College of Pharmacy, Western University of Health Sciences, Pomona, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Pharmacy, Western University of Health Sciences, 309 E. Second Street, Pomona, CA, 91766, USA","institution_ids":["https://openalex.org/I93393672"]},{"raw_affiliation_string":"College of Pharmacy, Western University of Health Sciences, Pomona, USA","institution_ids":["https://openalex.org/I93393672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080076598","display_name":"Ying Huang","orcid":"https://orcid.org/0000-0003-4756-7939"},"institutions":[{"id":"https://openalex.org/I93393672","display_name":"Western University of Health Sciences","ror":"https://ror.org/05167c961","country_code":"US","type":"education","lineage":["https://openalex.org/I93393672"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ying Huang","raw_affiliation_strings":["College of Pharmacy, Western University of Health Sciences, 309 E. Second Street, Pomona, CA, 91766, USA","College of Pharmacy, Western University of Health Sciences, Pomona, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Pharmacy, Western University of Health Sciences, 309 E. Second Street, Pomona, CA, 91766, USA","institution_ids":["https://openalex.org/I93393672"]},{"raw_affiliation_string":"College of Pharmacy, Western University of Health Sciences, Pomona, USA","institution_ids":["https://openalex.org/I93393672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110507775","display_name":"Zhenqiang Su","orcid":null},"institutions":[{"id":"https://openalex.org/I61822063","display_name":"ICF International (United States)","ror":"https://ror.org/0156f0c06","country_code":"US","type":"company","lineage":["https://openalex.org/I61822063"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhenqiang Su","raw_affiliation_strings":["Z-Tech/ICF International at NCTR/FDA, 3900 NCTR Road, Jefferson, AR, 72079, USA","Z-Tech/ICF International at NCTR/FDA, Jefferson, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Z-Tech/ICF International at NCTR/FDA, 3900 NCTR Road, Jefferson, AR, 72079, USA","institution_ids":["https://openalex.org/I61822063"]},{"raw_affiliation_string":"Z-Tech/ICF International at NCTR/FDA, Jefferson, USA","institution_ids":["https://openalex.org/I61822063"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100742819","display_name":"Huixiao Hong","orcid":"https://orcid.org/0000-0001-8087-3968"},"institutions":[{"id":"https://openalex.org/I1304557061","display_name":"National Center for Toxicological Research","ror":"https://ror.org/05jmhh281","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I1320320070","display_name":"United States Food and Drug Administration","ror":"https://ror.org/034xvzb47","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Huixiao Hong","raw_affiliation_strings":["Division of Systems Biology, National Center for Toxicological Research (NCTR), US Food and Drug Administration (FDA), 3900 NCTR Road, Jefferson, AR, 72079, USA","Division of Systems Biology, National Center for Toxicological Research (NCTR), US Food and Drug Administration (FDA), Jefferson, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Systems Biology, National Center for Toxicological Research (NCTR), US Food and Drug Administration (FDA), 3900 NCTR Road, Jefferson, AR, 72079, USA","institution_ids":["https://openalex.org/I1304557061"]},{"raw_affiliation_string":"Division of Systems Biology, National Center for Toxicological Research (NCTR), US Food and Drug Administration (FDA), Jefferson, USA","institution_ids":["https://openalex.org/I1304557061","https://openalex.org/I1320320070"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068886380","display_name":"Weida Tong","orcid":"https://orcid.org/0000-0003-3488-6148"},"institutions":[{"id":"https://openalex.org/I1304557061","display_name":"National Center for Toxicological Research","ror":"https://ror.org/05jmhh281","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I1320320070","display_name":"United States Food and Drug Administration","ror":"https://ror.org/034xvzb47","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Weida Tong","raw_affiliation_strings":["Division of Systems Biology, National Center for Toxicological Research (NCTR), US Food and Drug Administration (FDA), 3900 NCTR Road, Jefferson, AR, 72079, USA","Division of Systems Biology, National Center for Toxicological Research (NCTR), US Food and Drug Administration (FDA), Jefferson, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Systems Biology, National Center for Toxicological Research (NCTR), US Food and Drug Administration (FDA), 3900 NCTR Road, Jefferson, AR, 72079, USA","institution_ids":["https://openalex.org/I1304557061"]},{"raw_affiliation_string":"Division of Systems Biology, National Center for Toxicological Research (NCTR), US Food and Drug Administration (FDA), Jefferson, USA","institution_ids":["https://openalex.org/I1304557061","https://openalex.org/I1320320070"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102979537","display_name":"Leming Shi","orcid":"https://orcid.org/0000-0002-7143-2033"},"institutions":[{"id":"https://openalex.org/I1304557061","display_name":"National Center for Toxicological Research","ror":"https://ror.org/05jmhh281","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I1320320070","display_name":"United States Food and Drug Administration","ror":"https://ror.org/034xvzb47","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Leming Shi","raw_affiliation_strings":["Division of Systems Biology, National Center for Toxicological Research (NCTR), US Food and Drug Administration (FDA), 3900 NCTR Road, Jefferson, AR, 72079, USA","Division of Systems Biology, National Center for Toxicological Research (NCTR), US Food and Drug Administration (FDA), Jefferson, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Systems Biology, National Center for Toxicological Research (NCTR), US Food and Drug Administration (FDA), 3900 NCTR Road, Jefferson, AR, 72079, USA","institution_ids":["https://openalex.org/I1304557061"]},{"raw_affiliation_string":"Division of Systems Biology, National Center for Toxicological Research (NCTR), US Food and Drug Administration (FDA), Jefferson, USA","institution_ids":["https://openalex.org/I1304557061","https://openalex.org/I1320320070"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5102979537"],"corresponding_institution_ids":["https://openalex.org/I1304557061","https://openalex.org/I1320320070"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.9957,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.73279604,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"11","issue":"S6","first_page":"S10","last_page":"S10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8903999924659729,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8903999924659729,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.10140000283718109,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.0008999999845400453,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.7813340425491333},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.7630443572998047},{"id":"https://openalex.org/keywords/gene-chip-analysis","display_name":"Gene chip analysis","score":0.7558885812759399},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.6536655426025391},{"id":"https://openalex.org/keywords/microarray-databases","display_name":"Microarray databases","score":0.4928460121154785},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.4909237027168274},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4405282735824585},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38771116733551025},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26106923818588257},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.23602065443992615},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21332499384880066}],"concepts":[{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.7813340425491333},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.7630443572998047},{"id":"https://openalex.org/C24361400","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Gene chip analysis","level":5,"score":0.7558885812759399},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.6536655426025391},{"id":"https://openalex.org/C548314002","wikidata":"https://www.wikidata.org/wiki/Q6839218","display_name":"Microarray databases","level":5,"score":0.4928460121154785},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.4909237027168274},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4405282735824585},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38771116733551025},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26106923818588257},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.23602065443992615},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21332499384880066}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-11-s6-s10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s6-s10","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S6-S10","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20946593","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20946593","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:82ca8eb611e3472e80a509e41f09cf48","is_oa":false,"landing_page_url":"https://doaj.org/article/82ca8eb611e3472e80a509e41f09cf48","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss Suppl 6, p S10 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3026357","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3026357","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-s6-s10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s6-s10","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S6-S10","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.5099999904632568,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320317770","display_name":"Western University of Health Sciences","ror":"https://ror.org/05167c961"},{"id":"https://openalex.org/F4320332163","display_name":"U.S. Food and Drug Administration","ror":"https://ror.org/034xvzb47"},{"id":"https://openalex.org/F4320332382","display_name":"Oak Ridge Institute for Science and Education","ror":"https://ror.org/0526p1y61"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2006138378.pdf","grobid_xml":"https://content.openalex.org/works/W2006138378.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1530352458","https://openalex.org/W1544422103","https://openalex.org/W1967668617","https://openalex.org/W1970156673","https://openalex.org/W1986381857","https://openalex.org/W1998913367","https://openalex.org/W2001627351","https://openalex.org/W2004088708","https://openalex.org/W2010637767","https://openalex.org/W2039057614","https://openalex.org/W2059550141","https://openalex.org/W2091947792","https://openalex.org/W2107903949","https://openalex.org/W2115226431","https://openalex.org/W2115617081","https://openalex.org/W2119739306","https://openalex.org/W2130301347","https://openalex.org/W2130494035","https://openalex.org/W2132561013","https://openalex.org/W2136746865","https://openalex.org/W2144120272","https://openalex.org/W2167098291","https://openalex.org/W2240823261","https://openalex.org/W4230792699","https://openalex.org/W4230932396","https://openalex.org/W4247420482"],"related_works":["https://openalex.org/W2077123066","https://openalex.org/W3023720143","https://openalex.org/W2081127504","https://openalex.org/W2183420549","https://openalex.org/W2796636403","https://openalex.org/W2037383042","https://openalex.org/W2490137852","https://openalex.org/W2097822643","https://openalex.org/W2181762526","https://openalex.org/W2083006556"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,147],"Affymetrix":[2,128],"GeneChip\u00ae":[3,46],"system":[4],"is":[5,16],"a":[6,35,96,293],"commonly":[7],"used":[8],"platform":[9],"for":[10,66,118],"microarray":[11,56,161,207,221,237],"analysis":[12],"but":[13],"the":[14,28,77,85,121,144,152,181,185,190,195,206,211,227,250,282],"technology":[15],"inherently":[17],"expensive.":[18],"Unfortunately,":[19],"changes":[20],"in":[21,37,88,113,115,141,164,167,180,215,230,264,275],"experimental":[22],"planning":[23],"and":[24,55,166,197,222,257,273],"execution,":[25],"such":[26],"as":[27,201,203],"unavailability":[29],"of":[30,44,98,120,149,154,176,187,192,296],"previously":[31],"anticipated":[32],"samples":[33,82,124],"or":[34,130],"shift":[36],"research":[38],"focus,":[39],"may":[40],"render":[41],"significant":[42],"numbers":[43],"pre-purchased":[45],"microarrays":[47,62,199,214,263],"unprocessed":[48],"before":[49],"their":[50,92],"manufacturer's":[51,251],"expiration":[52,252],"dates.":[53],"Researchers":[54],"core":[57],"facilities":[58],"wonder":[59],"whether":[60,76],"expired":[61,127,182,196,212],"are":[63],"still":[64,90],"useful":[65],"gene":[67],"expression":[68],"analysis.":[69],"In":[70],"addition,":[71],"it":[72],"was":[73,169,173,200],"not":[74],"clear":[75],"two":[78,122],"human":[79],"reference":[80,284],"RNA":[81,285],"established":[83],"by":[84,226],"MAQC":[86,123,228,283],"project":[87,229],"2005":[89,142,168],"maintained":[91],"transcriptome":[93],"integrity":[94],"over":[95,292],"period":[97],"four":[99,247,299],"years.":[100,300],"Experiments":[101],"were":[102,111,136,217,244,254,290],"conducted":[103],"to":[104],"answer":[105],"these":[106],"questions.":[107],"RESULTS:":[108],"Microarray":[109],"data":[110,139,162,208,224,238,278],"generated":[112,163,209,225,239],"2009":[114,165,216],"three":[116],"replicates":[117],"each":[119],"with":[125,138,220,259],"either":[126],"U133A":[129,183,213,241],"unexpired":[131,198,262],"U133Plus2":[132,145,160],"microarrays.":[133],"These":[134],"results":[135,234],"compared":[137],"obtained":[140],"on":[143],"microarray.":[146],"percentage":[148,186],"overlap":[150,188],"between":[151,189],"lists":[153,191],"differentially":[155],"expressed":[156],"genes":[157],"(DEGs)":[158],"from":[159,194,261],"97.44%.":[170],"While":[171],"there":[172],"some":[174,268],"degree":[175],"fold":[177,270],"change":[178,271],"compression":[179,272],"microarrays,":[184,242],"DEGs":[193,266],"high":[202],"96.99%.":[204],"Moreover,":[205],"using":[210,240],"highly":[218,255],"concordant":[219],"TaqMan\u00ae":[223],"2005.":[231],"CONCLUSIONS:":[232],"Our":[233,277],"demonstrated":[235],"that":[236,281],"which":[243],"more":[245],"than":[246],"years":[248],"past":[249],"date,":[253],"specific":[256],"consistent":[258],"those":[260],"identifying":[265],"despite":[267],"appreciable":[269],"decrease":[274],"sensitivity.":[276],"also":[279],"suggested":[280],"samples,":[286],"stored":[287],"at":[288,297],"-80\u00b0C,":[289],"stable":[291],"time":[294],"frame":[295],"least":[298]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-25T09:21:30.201066","created_date":"2025-10-10T00:00:00"}
